Wall clock time and date at job start Sun Mar 29 2020 21:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.52206 * 2 1 4 4 C 1.53188 * 109.49796 * 120.07937 * 2 1 3 5 5 N 1.46925 * 108.77701 * 174.58785 * 4 2 1 6 6 C 1.36933 * 120.63218 * 126.36931 * 5 4 2 7 7 H 1.07998 * 120.00198 * 332.45537 * 6 5 4 8 8 C 1.38819 * 119.99952 * 152.17898 * 6 5 4 9 9 N 1.31617 * 120.00072 * 343.15781 * 8 6 5 10 10 Si 1.86804 * 119.99834 * 163.15974 * 8 6 5 11 11 H 1.48501 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.46995 * 120.00274 * 10 8 6 13 13 H 1.48504 * 109.46877 * 240.00049 * 10 8 6 14 14 C 1.46933 * 118.73707 * 306.64093 * 5 4 2 15 15 C 1.52758 * 109.00408 * 53.31408 * 14 5 4 16 16 C 1.53043 * 109.49808 * 239.92018 * 2 1 3 17 17 H 1.08997 * 109.46089 * 298.70160 * 16 2 1 18 18 C 1.50696 * 109.46124 * 58.66301 * 16 2 1 19 19 O 1.20827 * 119.99798 * 0.02562 * 18 16 2 20 20 O 1.34229 * 119.99848 * 179.97438 * 18 16 2 21 21 H 1.08997 * 109.47401 * 299.92231 * 1 2 3 22 22 H 1.09001 * 109.47197 * 59.91766 * 1 2 3 23 23 H 1.08997 * 109.47356 * 179.91687 * 1 2 3 24 24 H 1.09000 * 109.58790 * 54.80177 * 4 2 1 25 25 H 1.09000 * 109.58897 * 294.37524 * 4 2 1 26 26 H 0.97002 * 120.00067 * 179.97438 * 9 8 6 27 27 H 1.09000 * 109.58175 * 173.14238 * 14 5 4 28 28 H 1.08993 * 109.58871 * 293.56927 * 14 5 4 29 29 H 1.09006 * 109.56332 * 185.55045 * 15 14 5 30 30 H 1.08994 * 109.39241 * 65.51309 * 15 14 5 31 31 H 0.96709 * 116.99621 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2935 -0.3784 2.1941 7 1 3.9457 0.4203 2.8324 8 6 5.5381 -0.9521 2.4157 9 7 5.8290 -2.1196 1.8822 10 14 6.7998 -0.0670 3.4712 11 1 6.2310 1.2189 3.9490 12 1 7.1531 -0.9162 4.6370 13 1 8.0187 0.2002 2.6660 14 6 4.1055 -1.4216 -0.0332 15 6 3.5709 -0.6950 -1.2659 16 6 2.0408 -0.7231 -1.2484 17 1 1.6967 -1.7572 -1.2353 18 6 1.5118 -0.0337 -2.4796 19 8 0.7999 0.9364 -2.3700 20 8 1.8323 -0.4969 -3.6980 21 1 -0.3634 0.5126 0.8906 22 1 -0.3634 0.5151 -0.8893 23 1 -0.3634 -1.0276 -0.0015 24 1 1.6053 -1.7216 1.2980 25 1 1.7637 -0.1579 2.1389 26 1 6.6987 -2.5203 2.0368 27 1 5.1895 -1.3159 0.0101 28 1 3.8413 -2.4774 -0.0914 29 1 3.9335 -1.1897 -2.1671 30 1 3.9159 0.3388 -1.2546 31 1 1.4688 -0.0218 -4.4579 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306638795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:27 Heat of formation + Delta-G solvation = -102.000869 kcal Electronic energy + Delta-G solvation = -14896.568200 eV Core-core repulsion = 12370.280428 eV Total energy + Delta-G solvation = -2526.287772 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.59992 -39.08637 -37.12183 -35.36790 -32.96209 -32.52286 -28.07233 -27.38707 -24.73772 -22.99349 -22.31978 -20.59376 -18.96190 -18.68485 -17.64592 -16.82025 -16.53763 -15.60130 -15.55436 -14.95406 -14.60043 -14.52135 -14.02955 -13.30971 -13.10712 -12.98882 -12.88859 -12.65876 -12.45112 -12.37063 -11.99781 -11.95218 -11.70436 -11.53282 -11.23157 -10.94731 -10.54063 -8.69007 -7.87929 -5.32699 1.22745 1.46554 1.49028 1.59246 2.18790 2.51502 3.27519 3.63773 3.72026 3.89864 4.15574 4.31330 4.50027 4.61524 4.71593 4.78126 4.87324 4.94347 4.99114 5.11292 5.27159 5.35277 5.40296 5.48895 5.64172 5.71976 5.76501 6.39297 7.07345 7.15113 7.85297 8.36473 9.18852 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.047495 B = 0.008783 C = 0.008104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.393200 B = 3187.378820 C = 3454.269937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.151 3.849 5 N -0.613 5.613 6 C -0.264 4.264 7 H 0.064 0.936 8 C -0.048 4.048 9 N -0.932 5.932 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.291 1.291 13 H -0.289 1.289 14 C 0.177 3.823 15 C -0.118 4.118 16 C -0.067 4.067 17 H 0.113 0.887 18 C 0.494 3.506 19 O -0.537 6.537 20 O -0.509 6.509 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.025 0.975 25 H 0.056 0.944 26 H 0.251 0.749 27 H 0.059 0.941 28 H 0.009 0.991 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 2.264 -8.673 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.026 3.974 5 N -0.336 5.336 6 C -0.395 4.395 7 H 0.082 0.918 8 C -0.244 4.244 9 N -0.578 5.578 10 Si 0.793 3.207 11 H -0.194 1.194 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.051 3.949 15 C -0.157 4.157 16 C -0.086 4.086 17 H 0.131 0.869 18 C 0.338 3.662 19 O -0.428 6.428 20 O -0.323 6.323 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.027 0.973 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -7.637 2.229 -8.281 11.483 hybrid contribution 0.666 0.524 0.170 0.864 sum -6.972 2.754 -8.111 11.044 Atomic orbital electron populations 1.21978 0.93362 1.02220 1.03103 1.21385 0.96586 0.98731 0.93535 0.92670 1.21078 0.83648 0.97083 0.95626 1.44360 1.01013 1.71793 1.16479 1.19529 0.98986 1.12156 1.08783 0.91790 1.25755 1.01581 0.96074 1.00945 1.70165 1.22051 1.16023 1.49524 0.85247 0.79114 0.78322 0.78002 1.19378 1.21792 1.21587 1.20531 0.97887 0.92924 0.83555 1.21945 0.92346 1.01253 1.00154 1.21017 0.97292 1.01130 0.89127 0.86907 1.23551 0.76087 0.81389 0.85159 1.90606 1.36922 1.27798 1.87472 1.84537 1.71220 1.59674 1.16821 0.92119 0.90971 0.92141 0.95725 0.92580 0.93987 0.92234 0.97310 0.89625 0.93214 0.71333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 8.86 71.98 0.64 -3.70 16 2 C -0.08 -2.87 2.06 -10.72 -0.02 -2.89 16 3 H 0.05 2.14 8.13 -2.38 -0.02 2.12 16 4 C 0.15 6.23 5.80 86.36 0.50 6.73 16 5 N -0.61 -30.67 3.00 -699.93 -2.10 -32.77 16 6 C -0.26 -14.58 9.58 84.04 0.81 -13.77 16 7 H 0.06 3.48 7.88 -2.91 -0.02 3.45 16 8 C -0.05 -2.67 4.92 84.86 0.42 -2.25 16 9 N -0.93 -54.34 11.18 21.65 0.24 -54.10 16 10 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 14 C 0.18 8.30 5.28 86.22 0.45 8.75 16 15 C -0.12 -4.32 5.28 30.53 0.16 -4.16 16 16 C -0.07 -2.15 2.14 -11.51 -0.02 -2.18 16 17 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 18 C 0.49 14.25 7.33 71.23 0.52 14.77 16 19 O -0.54 -17.60 14.33 21.96 0.31 -17.29 16 20 O -0.51 -11.18 13.30 -51.41 -0.68 -11.86 16 21 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.07 2.17 5.41 -2.39 -0.01 2.16 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 26 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.06 3.18 6.05 -2.39 -0.01 3.17 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.09 2.74 8.08 -2.38 -0.02 2.72 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.43 5.09 9.10 -74.05 -0.67 4.42 16 Total: -1.00 -64.74 253.74 3.71 -61.03 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 0.45 Total: 6.86 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 3.45 Total: 1.31 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.86 Total: -86.87 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.37 Total: -29.14 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.74 3.71 -61.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306638795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.967 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds