Wall clock time and date at job start Sun Mar 29 2020 22:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99770 * 2 1 4 4 C 1.50697 * 110.54215 * 292.86960 * 3 2 1 5 5 O 1.21291 * 120.00160 * 146.75443 * 4 3 2 6 6 N 1.34778 * 120.00206 * 326.76882 * 4 3 2 7 7 C 1.37096 * 120.00324 * 175.03078 * 6 4 3 8 8 H 1.08002 * 120.00139 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99802 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00234 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99602 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47485 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47121 * 120.00175 * 11 9 7 14 14 H 1.48505 * 109.47300 * 240.00048 * 11 9 7 15 15 C 1.54894 * 110.48680 * 170.26049 * 3 2 1 16 16 C 1.54892 * 102.74891 * 203.38161 * 15 3 2 17 17 C 1.54263 * 104.19653 * 37.94032 * 16 15 3 18 18 C 1.53878 * 106.60118 * 336.39112 * 17 16 15 19 19 H 1.09000 * 109.46846 * 184.77245 * 1 2 3 20 20 H 1.08995 * 109.47749 * 304.77387 * 1 2 3 21 21 H 1.09006 * 109.47481 * 64.77792 * 1 2 3 22 22 H 0.97003 * 119.99455 * 355.01659 * 6 4 3 23 23 H 0.97002 * 119.99986 * 179.97438 * 10 9 7 24 24 H 1.09001 * 110.75482 * 85.06290 * 15 3 2 25 25 H 1.09002 * 110.75241 * 321.68856 * 15 3 2 26 26 H 1.08998 * 110.48663 * 279.26304 * 16 15 3 27 27 H 1.08998 * 110.48702 * 156.61849 * 16 15 3 28 28 H 1.08998 * 110.03641 * 95.67368 * 17 16 15 29 29 H 1.09003 * 110.03269 * 217.10411 * 17 16 15 30 30 H 1.09000 * 110.03404 * 119.28370 * 18 17 16 31 31 H 1.09000 * 110.03485 * 240.72026 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7242 2.0116 -1.3002 5 8 1.5684 3.2144 -1.3157 6 7 1.6412 1.3066 -2.4459 7 6 1.2810 1.9324 -3.6113 8 1 1.0633 2.9902 -3.6113 9 6 1.1961 1.2056 -4.7926 10 7 1.4615 -0.0814 -4.7927 11 14 0.7046 2.0581 -6.3803 12 1 0.4611 3.4986 -6.1140 13 1 1.7968 1.9172 -7.3765 14 1 -0.5344 1.4364 -6.9131 15 6 3.5371 1.2191 0.2455 16 6 3.8727 2.6225 0.8084 17 6 2.6659 2.9691 1.7047 18 6 1.4817 2.1317 1.1908 19 1 -0.3633 -1.0241 0.0855 20 1 -0.3634 0.5861 0.8441 21 1 -0.3634 0.4379 -0.9297 22 1 1.8367 0.3565 -2.4459 23 1 1.4019 -0.5889 -5.6173 24 1 4.0690 1.0403 -0.6890 25 1 3.7675 0.4444 0.9768 26 1 3.9665 3.3460 -0.0014 27 1 4.7885 2.5879 1.3984 28 1 2.8840 2.7107 2.7409 29 1 2.4346 4.0313 1.6251 30 1 1.1251 1.4669 1.9775 31 1 0.6756 2.7875 0.8616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306693245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:41 Heat of formation + Delta-G solvation = -95.121976 kcal Electronic energy + Delta-G solvation = -15018.930762 eV Core-core repulsion = 12492.941282 eV Total energy + Delta-G solvation = -2525.989481 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.68177 -36.70439 -35.51592 -33.80147 -31.16153 -28.69100 -27.91636 -25.80644 -24.90373 -21.57139 -20.07420 -18.59732 -17.83994 -16.92450 -15.61472 -15.02447 -14.72526 -14.18991 -14.00731 -13.85533 -13.29929 -12.82864 -12.42018 -12.07488 -11.60026 -11.24590 -11.09678 -11.02406 -10.80358 -10.69579 -10.44166 -10.34837 -10.22506 -10.07237 -9.59096 -9.47886 -8.12584 -7.94468 -6.41605 -3.82563 3.14503 3.25846 3.32961 3.81060 4.09860 4.20714 4.89436 4.97803 4.98986 5.33796 5.41896 5.70314 5.76181 5.84181 5.85974 6.00906 6.09503 6.13111 6.18336 6.25215 6.26223 6.41687 6.52975 6.57398 6.74312 7.54065 7.55784 8.07236 8.62682 9.16549 9.56835 10.07038 10.75127 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.009535 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.740052 B = 2935.959354 C = 3175.494912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.375 6.375 3 C 0.101 3.899 4 C 0.425 3.575 5 O -0.591 6.591 6 N -0.548 5.548 7 C -0.303 4.303 8 H 0.103 0.897 9 C 0.024 3.976 10 N -0.894 5.894 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.281 1.281 15 C -0.102 4.102 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.131 4.131 19 H 0.081 0.919 20 H 0.039 0.961 21 H 0.051 0.949 22 H 0.398 0.602 23 H 0.272 0.728 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.104 -0.157 9.323 9.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.294 6.294 3 C 0.058 3.942 4 C 0.210 3.790 5 O -0.477 6.477 6 N -0.184 5.184 7 C -0.433 4.433 8 H 0.121 0.879 9 C -0.178 4.178 10 N -0.534 5.534 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.140 4.140 16 C -0.157 4.157 17 C -0.148 4.148 18 C -0.169 4.169 19 H 0.100 0.900 20 H 0.058 0.942 21 H 0.069 0.931 22 H 0.232 0.768 23 H 0.082 0.918 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.083 0.329 9.139 9.209 hybrid contribution -0.401 -0.086 -0.929 1.016 sum 0.681 0.243 8.209 8.241 Atomic orbital electron populations 1.22761 0.81294 1.02023 1.00836 1.87873 1.19790 1.26718 1.94973 1.22654 0.94707 0.82881 0.93951 1.20139 0.85445 0.88022 0.85373 1.90501 1.56503 1.14202 1.86478 1.41930 1.58221 1.11695 1.06519 1.19794 1.42737 0.95888 0.84872 0.87927 1.25302 0.97361 0.95517 0.99645 1.69649 1.48443 1.06467 1.28887 0.85818 0.78079 0.79505 0.81041 1.19216 1.20674 1.20702 1.22403 0.92142 0.97773 1.01696 1.22295 0.97443 0.96587 0.99419 1.21923 0.94666 1.00109 0.98141 1.22503 0.99413 0.98575 0.96435 0.90019 0.94220 0.93081 0.76754 0.91832 0.90765 0.90398 0.90718 0.91683 0.92377 0.91626 0.91407 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.43 101.05 1.05 1.53 16 2 O -0.37 -7.26 9.78 -35.23 -0.34 -7.61 16 3 C 0.10 1.99 0.90 -90.11 -0.08 1.91 16 4 C 0.43 10.45 5.54 -10.99 -0.06 10.39 16 5 O -0.59 -16.15 15.48 5.55 0.09 -16.06 16 6 N -0.55 -14.51 4.91 -10.96 -0.05 -14.56 16 7 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 8 H 0.10 3.04 7.17 -52.49 -0.38 2.66 16 9 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 10 N -0.89 -24.75 13.05 55.50 0.72 -24.02 16 11 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.10 -1.77 6.09 -24.73 -0.15 -1.92 16 16 C -0.12 -1.89 6.57 -25.07 -0.16 -2.05 16 17 C -0.11 -1.68 6.80 -25.61 -0.17 -1.85 16 18 C -0.13 -2.26 4.47 -25.61 -0.11 -2.37 16 19 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 20 H 0.04 0.60 6.56 -51.93 -0.34 0.26 16 21 H 0.05 1.01 7.36 -51.93 -0.38 0.63 16 22 H 0.40 10.51 7.42 -40.82 -0.30 10.20 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.07 1.35 8.04 -51.93 -0.42 0.94 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.02 7.41 -51.93 -0.39 0.64 16 31 H 0.08 1.44 7.36 -51.93 -0.38 1.06 16 LS Contribution 258.56 15.07 3.90 3.90 Total: -1.00 -30.49 258.56 -4.91 -35.40 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.26 Total: 9.37 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 0.07 Total: -2.56 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.67 Total: -38.58 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.26 Total: -23.67 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.49 -4.91 -35.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306693245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.724 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds