Wall clock time and date at job start Sun Mar 29 2020 22:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99770 * 2 1 4 4 C 1.50697 * 110.54215 * 292.86960 * 3 2 1 5 5 O 1.21291 * 120.00160 * 146.75443 * 4 3 2 6 6 N 1.34778 * 120.00206 * 326.76882 * 4 3 2 7 7 C 1.37096 * 120.00324 * 175.03078 * 6 4 3 8 8 H 1.08002 * 120.00139 * 359.97438 * 7 6 4 9 9 C 1.38951 * 119.99802 * 179.97438 * 7 6 4 10 10 N 1.31411 * 120.00234 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99602 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47485 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47121 * 120.00175 * 11 9 7 14 14 H 1.48505 * 109.47300 * 240.00048 * 11 9 7 15 15 C 1.54894 * 110.48680 * 170.26049 * 3 2 1 16 16 C 1.54892 * 102.74891 * 203.38161 * 15 3 2 17 17 C 1.54263 * 104.19653 * 37.94032 * 16 15 3 18 18 C 1.53878 * 106.60118 * 336.39112 * 17 16 15 19 19 H 1.09000 * 109.46846 * 184.77245 * 1 2 3 20 20 H 1.08995 * 109.47749 * 304.77387 * 1 2 3 21 21 H 1.09006 * 109.47481 * 64.77792 * 1 2 3 22 22 H 0.97003 * 119.99455 * 355.01659 * 6 4 3 23 23 H 0.97002 * 119.99986 * 179.97438 * 10 9 7 24 24 H 1.09001 * 110.75482 * 85.06290 * 15 3 2 25 25 H 1.09002 * 110.75241 * 321.68856 * 15 3 2 26 26 H 1.08998 * 110.48663 * 279.26304 * 16 15 3 27 27 H 1.08998 * 110.48702 * 156.61849 * 16 15 3 28 28 H 1.08998 * 110.03641 * 95.67368 * 17 16 15 29 29 H 1.09003 * 110.03269 * 217.10411 * 17 16 15 30 30 H 1.09000 * 110.03404 * 119.28370 * 18 17 16 31 31 H 1.09000 * 110.03485 * 240.72026 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.7242 2.0116 -1.3002 5 8 1.5684 3.2144 -1.3157 6 7 1.6412 1.3066 -2.4459 7 6 1.2810 1.9324 -3.6113 8 1 1.0633 2.9902 -3.6113 9 6 1.1961 1.2056 -4.7926 10 7 1.4615 -0.0814 -4.7927 11 14 0.7046 2.0581 -6.3803 12 1 0.4611 3.4986 -6.1140 13 1 1.7968 1.9172 -7.3765 14 1 -0.5344 1.4364 -6.9131 15 6 3.5371 1.2191 0.2455 16 6 3.8727 2.6225 0.8084 17 6 2.6659 2.9691 1.7047 18 6 1.4817 2.1317 1.1908 19 1 -0.3633 -1.0241 0.0855 20 1 -0.3634 0.5861 0.8441 21 1 -0.3634 0.4379 -0.9297 22 1 1.8367 0.3565 -2.4459 23 1 1.4019 -0.5889 -5.6173 24 1 4.0690 1.0403 -0.6890 25 1 3.7675 0.4444 0.9768 26 1 3.9665 3.3460 -0.0014 27 1 4.7885 2.5879 1.3984 28 1 2.8840 2.7107 2.7409 29 1 2.4346 4.0313 1.6251 30 1 1.1251 1.4669 1.9775 31 1 0.6756 2.7875 0.8616 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306693245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:40 Heat of formation + Delta-G solvation = -116.643984 kcal Electronic energy + Delta-G solvation = -15019.864027 eV Core-core repulsion = 12492.941282 eV Total energy + Delta-G solvation = -2526.922745 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.34972 -38.53159 -36.97743 -35.82437 -33.25698 -30.07685 -29.36000 -27.39547 -26.75287 -23.29417 -21.37252 -20.45588 -19.78005 -18.63616 -17.16244 -16.87082 -16.32124 -15.84806 -15.65827 -15.56544 -14.97351 -14.49384 -13.99599 -13.60829 -13.47402 -12.97551 -12.57032 -12.50784 -12.39723 -12.16031 -12.12133 -12.04510 -11.90539 -11.55110 -11.32231 -11.08903 -10.09135 -9.98601 -8.50591 -6.00990 1.32082 1.38117 1.53007 1.91360 2.25250 2.68560 3.10478 3.14556 3.62062 3.68981 4.10660 4.33574 4.38338 4.46161 4.50970 4.51818 4.67214 4.79170 4.82358 4.85157 5.01167 5.04198 5.18747 5.26768 5.35364 5.48847 5.86709 6.12589 6.55028 7.05814 7.50326 8.03078 8.66395 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042112 B = 0.009535 C = 0.008815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.740052 B = 2935.959354 C = 3175.494912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.380 6.380 3 C 0.098 3.902 4 C 0.423 3.577 5 O -0.625 6.625 6 N -0.559 5.559 7 C -0.339 4.339 8 H 0.080 0.920 9 C -0.012 4.012 10 N -0.916 5.916 11 Si 0.996 3.004 12 H -0.272 1.272 13 H -0.269 1.269 14 H -0.268 1.268 15 C -0.101 4.101 16 C -0.118 4.118 17 C -0.108 4.108 18 C -0.128 4.128 19 H 0.111 0.889 20 H 0.061 0.939 21 H 0.015 0.985 22 H 0.396 0.604 23 H 0.279 0.721 24 H 0.055 0.945 25 H 0.110 0.890 26 H 0.041 0.959 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.421 -0.767 10.524 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.298 6.298 3 C 0.056 3.944 4 C 0.210 3.790 5 O -0.512 6.512 6 N -0.194 5.194 7 C -0.469 4.469 8 H 0.098 0.902 9 C -0.212 4.212 10 N -0.556 5.556 11 Si 0.819 3.181 12 H -0.197 1.197 13 H -0.194 1.194 14 H -0.193 1.193 15 C -0.139 4.139 16 C -0.155 4.155 17 C -0.145 4.145 18 C -0.166 4.166 19 H 0.129 0.871 20 H 0.080 0.920 21 H 0.034 0.966 22 H 0.230 0.770 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.128 0.872 26 H 0.060 0.940 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.402 -0.299 10.352 10.451 hybrid contribution -0.517 0.087 -1.272 1.376 sum 0.885 -0.211 9.080 9.126 Atomic orbital electron populations 1.22906 0.80372 1.04018 0.99881 1.87875 1.20850 1.26330 1.94790 1.22703 0.96842 0.83111 0.91775 1.21171 0.83319 0.87844 0.86656 1.90463 1.57466 1.15951 1.87362 1.41993 1.59027 1.11529 1.06897 1.19766 1.45189 0.95315 0.86588 0.90239 1.26137 0.96556 0.96167 1.02342 1.69715 1.48339 1.07419 1.30132 0.84841 0.78369 0.78077 0.76840 1.19684 1.19424 1.19304 1.22488 0.89752 0.99781 1.01854 1.22305 0.99609 0.94599 0.98997 1.21965 0.93197 0.99317 1.00033 1.22526 0.99591 0.98563 0.95949 0.87118 0.92009 0.96647 0.76993 0.91124 0.92654 0.87191 0.94042 0.87832 0.88375 0.92392 0.88400 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 10.43 113.37 1.18 2.00 16 2 O -0.38 -14.26 9.78 -148.98 -1.46 -15.72 16 3 C 0.10 3.82 0.90 -10.46 -0.01 3.81 16 4 C 0.42 21.43 5.54 87.66 0.49 21.92 16 5 O -0.62 -35.52 15.48 -3.07 -0.05 -35.57 16 6 N -0.56 -30.69 4.91 -306.98 -1.51 -32.20 16 7 C -0.34 -19.96 9.68 84.04 0.81 -19.15 16 8 H 0.08 4.95 7.17 -2.91 -0.02 4.93 16 9 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 10 N -0.92 -51.03 13.05 21.66 0.28 -50.75 16 11 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 14 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 15 C -0.10 -3.32 6.09 31.89 0.19 -3.13 16 16 C -0.12 -3.47 6.57 31.67 0.21 -3.26 16 17 C -0.11 -2.97 6.80 31.32 0.21 -2.76 16 18 C -0.13 -4.18 4.47 31.32 0.14 -4.04 16 19 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 20 H 0.06 1.77 6.56 -2.39 -0.02 1.76 16 21 H 0.01 0.61 7.36 -2.38 -0.02 0.59 16 22 H 0.40 21.61 7.42 -92.71 -0.69 20.92 16 23 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 24 H 0.05 2.01 8.04 -2.39 -0.02 1.99 16 25 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.10 2.59 7.41 -2.39 -0.02 2.58 16 31 H 0.05 1.90 7.36 -2.39 -0.02 1.88 16 Total: -1.00 -67.58 258.56 3.43 -64.15 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.44 Total: 29.19 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 3.69 Total: -4.79 kcal Atomic # 7 Polarization: -81.73 SS G_CDS: -1.22 Total: -82.95 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -1.50 Total: -51.29 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -67.58 3.43 -64.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306693245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.497 kcal (2) G-P(sol) polarization free energy of solvation -67.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds