Wall clock time and date at job start Sun Mar 29 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.36488 * 2 1 4 4 C 1.54377 * 110.32739 * 237.81369 * 2 1 3 5 5 N 1.48557 * 104.59387 * 264.95570 * 4 2 1 6 6 C 1.46902 * 110.99761 * 200.95910 * 5 4 2 7 7 C 1.53001 * 109.47217 * 185.29341 * 6 5 4 8 8 C 1.50694 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.48559 * 104.22425 * 320.51459 * 5 4 2 17 17 C 1.54263 * 110.32090 * 122.17318 * 2 1 3 18 18 H 1.08996 * 110.32689 * 237.79440 * 17 2 1 19 19 O 1.42895 * 110.41379 * 359.96527 * 17 2 1 20 20 H 1.09000 * 109.47209 * 297.82217 * 1 2 3 21 21 H 1.08997 * 109.46860 * 57.82847 * 1 2 3 22 22 H 1.09007 * 109.46723 * 177.82147 * 1 2 3 23 23 H 1.09006 * 109.46692 * 182.17977 * 3 2 1 24 24 H 1.09003 * 109.46890 * 302.17526 * 3 2 1 25 25 H 1.09001 * 109.47392 * 62.18125 * 3 2 1 26 26 H 1.09001 * 110.40926 * 146.17574 * 4 2 1 27 27 H 1.08996 * 110.41011 * 23.73598 * 4 2 1 28 28 H 1.09002 * 109.46978 * 65.29611 * 6 5 4 29 29 H 1.08998 * 109.47251 * 305.29129 * 6 5 4 30 30 H 1.09007 * 109.46922 * 59.99765 * 7 6 5 31 31 H 1.09003 * 109.46836 * 300.00520 * 7 6 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 33 33 H 1.09005 * 110.41152 * 158.26099 * 16 5 4 34 34 H 1.08990 * 110.41294 * 280.58971 * 16 5 4 35 35 H 0.96692 * 114.00291 * 177.14136 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0663 -0.7711 -1.2252 5 7 2.3149 -2.1467 -0.7222 6 6 3.2651 -2.8595 -1.5865 7 6 3.3948 -4.3093 -1.1152 8 6 4.3701 -5.0403 -2.0014 9 1 4.8499 -4.5225 -2.8188 10 6 4.6499 -6.3702 -1.7687 11 7 4.0661 -7.0006 -0.7730 12 14 5.8583 -7.2765 -2.8677 13 1 5.1288 -7.8863 -4.0084 14 1 6.8721 -6.3211 -3.3823 15 1 6.5348 -8.3426 -2.0859 16 6 2.8808 -1.9421 0.6360 17 6 2.0658 -0.7703 1.2245 18 1 2.7081 -0.1266 1.8254 19 8 0.9830 -1.2661 2.0142 20 1 -0.3633 0.4796 0.9089 21 1 -0.3633 0.5472 -0.8699 22 1 -0.3633 -1.0270 -0.0391 23 1 3.1517 1.4176 -0.0391 24 1 1.6759 1.9654 -0.8699 25 1 1.7393 1.9420 0.9089 26 1 2.9942 -0.3227 -1.5802 27 1 1.3215 -0.7860 -2.0208 28 1 4.2389 -2.3723 -1.5352 29 1 2.9042 -2.8427 -2.6148 30 1 2.4210 -4.7964 -1.1664 31 1 3.7557 -4.3261 -0.0868 32 1 4.2627 -7.9363 -0.6096 33 1 2.7491 -2.8387 1.2418 34 1 3.9365 -1.6789 0.5723 35 1 1.2606 -1.7960 2.7739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306757668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:40 Heat of formation + Delta-G solvation = -61.056171 kcal Electronic energy + Delta-G solvation = -14756.503781 eV Core-core repulsion = 12367.824599 eV Total energy + Delta-G solvation = -2388.679182 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.54870 -35.68949 -34.29323 -32.72075 -29.77878 -28.11017 -27.09110 -25.46813 -23.54683 -21.79139 -20.04294 -18.70816 -16.80791 -16.42044 -15.43799 -15.17760 -14.47138 -14.09473 -13.59168 -13.21952 -13.07709 -12.64209 -12.37931 -12.05433 -11.96443 -11.89244 -11.35422 -11.10721 -10.91606 -10.75705 -10.71753 -10.44194 -10.26402 -9.87719 -9.63218 -9.33663 -9.11379 -8.33349 -7.84926 -5.98925 -4.01542 3.32377 3.38324 3.41396 4.31933 4.41487 4.57136 4.69407 4.90284 5.20064 5.28394 5.36919 5.44535 5.60070 5.66743 5.82310 5.85362 5.95007 6.03421 6.04151 6.16262 6.27416 6.32497 6.41558 6.44910 6.66591 6.95947 7.37181 7.49286 7.75557 7.87578 7.89814 8.09069 8.44069 9.05801 9.62056 11.12481 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.056971 B = 0.006353 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.364273 B = 4406.499271 C = 4636.494946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.064 4.064 3 C -0.139 4.139 4 C 0.038 3.962 5 N -0.502 5.502 6 C 0.051 3.949 7 C 0.030 3.970 8 C -0.523 4.523 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.275 1.275 15 H -0.286 1.286 16 C 0.007 3.993 17 C 0.108 3.892 18 H 0.056 0.944 19 O -0.554 6.554 20 H 0.053 0.947 21 H 0.044 0.956 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.021 0.979 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.014 0.986 32 H 0.260 0.740 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 14.277 3.576 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.064 4.064 3 C -0.196 4.196 4 C -0.090 4.090 5 N -0.226 5.226 6 C -0.076 4.076 7 C -0.007 4.007 8 C -0.562 4.562 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.720 3.280 13 H -0.206 1.206 14 H -0.200 1.200 15 H -0.212 1.212 16 C -0.122 4.122 17 C 0.048 3.952 18 H 0.074 0.926 19 O -0.359 6.359 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.513 14.091 3.208 15.140 hybrid contribution 1.940 -0.503 -0.247 2.019 sum -2.573 13.588 2.961 14.143 Atomic orbital electron populations 1.21466 0.92897 1.02758 1.00238 1.21351 0.97501 0.94048 0.93541 1.21893 1.00632 0.95169 1.01923 1.23251 0.99414 0.89834 0.96540 1.65464 1.42318 1.12961 1.01822 1.22526 0.91321 0.97787 0.95990 1.19032 0.97290 0.88086 0.96287 1.21206 1.25081 0.95539 1.14331 0.92826 1.25000 0.96321 0.97620 0.95382 1.69978 1.43129 1.10585 1.29545 0.86592 0.81285 0.79511 0.80583 1.20604 1.19954 1.21217 1.23804 0.96492 0.98709 0.93205 1.22605 0.87457 0.93629 0.91500 0.92591 1.86530 1.33737 1.72431 1.43231 0.92826 0.93717 0.91332 0.92732 0.92176 0.92479 0.94289 0.90309 0.96081 0.92007 0.95710 0.96744 0.93001 0.89452 0.93687 0.77909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 7.48 37.16 0.28 -1.28 16 2 C -0.06 -0.86 1.03 -153.12 -0.16 -1.02 16 3 C -0.14 -1.50 8.25 37.16 0.31 -1.19 16 4 C 0.04 0.59 5.58 -2.19 -0.01 0.58 16 5 N -0.50 -9.61 5.37 -229.97 -1.24 -10.84 16 6 C 0.05 1.12 4.75 -3.82 -0.02 1.10 16 7 C 0.03 0.81 5.03 -27.89 -0.14 0.67 16 8 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 9 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 11 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 12 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 C 0.01 0.11 5.47 -2.18 -0.01 0.10 16 17 C 0.11 1.51 4.04 -25.34 -0.10 1.40 16 18 H 0.06 0.69 7.71 -51.93 -0.40 0.28 16 19 O -0.55 -7.73 11.57 -35.23 -0.41 -8.13 16 20 H 0.05 0.69 7.90 -51.93 -0.41 0.28 16 21 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.08 7.90 -51.92 -0.41 0.67 16 23 H 0.05 0.57 8.10 -51.93 -0.42 0.15 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.59 7.68 -51.93 -0.40 0.19 16 27 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 28 H 0.02 0.45 7.88 -51.93 -0.41 0.04 16 29 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 30 H 0.02 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.01 0.40 7.26 -51.93 -0.38 0.02 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.09 1.59 7.69 -51.93 -0.40 1.19 16 34 H 0.04 0.76 7.82 -51.93 -0.41 0.36 16 35 H 0.37 3.85 9.09 45.56 0.41 4.27 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -31.55 280.91 -7.24 -38.79 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.28 Total: -0.96 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.27 Total: -13.44 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.50 Total: -37.33 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: -0.41 Total: -8.13 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.55 -7.24 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306757668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.269 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds