Wall clock time and date at job start Sun Mar 29 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 110.36488 * 2 1 4 4 C 1.54377 * 110.32739 * 237.81369 * 2 1 3 5 5 N 1.48557 * 104.59387 * 264.95570 * 4 2 1 6 6 C 1.46902 * 110.99761 * 200.95910 * 5 4 2 7 7 C 1.53001 * 109.47217 * 185.29341 * 6 5 4 8 8 C 1.50694 * 109.47168 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00563 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99902 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47353 * 269.99586 * 12 10 8 14 14 H 1.48501 * 109.47293 * 30.00037 * 12 10 8 15 15 H 1.48504 * 109.46680 * 149.99835 * 12 10 8 16 16 C 1.48559 * 104.22425 * 320.51459 * 5 4 2 17 17 C 1.54263 * 110.32090 * 122.17318 * 2 1 3 18 18 H 1.08996 * 110.32689 * 237.79440 * 17 2 1 19 19 O 1.42895 * 110.41379 * 359.96527 * 17 2 1 20 20 H 1.09000 * 109.47209 * 297.82217 * 1 2 3 21 21 H 1.08997 * 109.46860 * 57.82847 * 1 2 3 22 22 H 1.09007 * 109.46723 * 177.82147 * 1 2 3 23 23 H 1.09006 * 109.46692 * 182.17977 * 3 2 1 24 24 H 1.09003 * 109.46890 * 302.17526 * 3 2 1 25 25 H 1.09001 * 109.47392 * 62.18125 * 3 2 1 26 26 H 1.09001 * 110.40926 * 146.17574 * 4 2 1 27 27 H 1.08996 * 110.41011 * 23.73598 * 4 2 1 28 28 H 1.09002 * 109.46978 * 65.29611 * 6 5 4 29 29 H 1.08998 * 109.47251 * 305.29129 * 6 5 4 30 30 H 1.09007 * 109.46922 * 59.99765 * 7 6 5 31 31 H 1.09003 * 109.46836 * 300.00520 * 7 6 5 32 32 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 33 33 H 1.09005 * 110.41152 * 158.26099 * 16 5 4 34 34 H 1.08990 * 110.41294 * 280.58971 * 16 5 4 35 35 H 0.96692 * 114.00291 * 177.14136 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0663 -0.7711 -1.2252 5 7 2.3149 -2.1467 -0.7222 6 6 3.2651 -2.8595 -1.5865 7 6 3.3948 -4.3093 -1.1152 8 6 4.3701 -5.0403 -2.0014 9 1 4.8499 -4.5225 -2.8188 10 6 4.6499 -6.3702 -1.7687 11 7 4.0661 -7.0006 -0.7730 12 14 5.8583 -7.2765 -2.8677 13 1 5.1288 -7.8863 -4.0084 14 1 6.8721 -6.3211 -3.3823 15 1 6.5348 -8.3426 -2.0859 16 6 2.8808 -1.9421 0.6360 17 6 2.0658 -0.7703 1.2245 18 1 2.7081 -0.1266 1.8254 19 8 0.9830 -1.2661 2.0142 20 1 -0.3633 0.4796 0.9089 21 1 -0.3633 0.5472 -0.8699 22 1 -0.3633 -1.0270 -0.0391 23 1 3.1517 1.4176 -0.0391 24 1 1.6759 1.9654 -0.8699 25 1 1.7393 1.9420 0.9089 26 1 2.9942 -0.3227 -1.5802 27 1 1.3215 -0.7860 -2.0208 28 1 4.2389 -2.3723 -1.5352 29 1 2.9042 -2.8427 -2.6148 30 1 2.4210 -4.7964 -1.1664 31 1 3.7557 -4.3261 -0.0868 32 1 4.2627 -7.9363 -0.6096 33 1 2.7491 -2.8387 1.2418 34 1 3.9365 -1.6789 0.5723 35 1 1.2606 -1.7960 2.7739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306757668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:40 Heat of formation + Delta-G solvation = -84.799761 kcal Electronic energy + Delta-G solvation = -14757.533381 eV Core-core repulsion = 12367.824599 eV Total energy + Delta-G solvation = -2389.708781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.78832 -37.05882 -35.73635 -34.62009 -31.61113 -29.48410 -28.06743 -27.15057 -25.10568 -23.40665 -21.70708 -19.86088 -18.59379 -17.92249 -16.79986 -16.58367 -16.46968 -15.42316 -14.98981 -14.53358 -14.29257 -14.19649 -14.09913 -13.39703 -13.32439 -13.07317 -12.93885 -12.79078 -12.50671 -12.40916 -11.93147 -11.85629 -11.75969 -11.40139 -11.28762 -11.14432 -10.80512 -10.57801 -9.34705 -8.22308 -6.34591 1.38855 1.40976 1.51866 2.38777 3.10833 3.13688 3.30811 3.53345 3.71697 4.08912 4.20591 4.36712 4.39835 4.49704 4.50678 4.64640 4.77464 4.81467 4.87527 4.91473 5.01573 5.09457 5.13064 5.27361 5.34260 5.41896 5.55101 5.61084 5.75491 5.98366 6.10998 6.28285 6.82388 6.92563 7.34889 8.90018 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.056971 B = 0.006353 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.364273 B = 4406.499271 C = 4636.494946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.063 4.063 3 C -0.133 4.133 4 C 0.037 3.963 5 N -0.524 5.524 6 C 0.068 3.932 7 C 0.040 3.960 8 C -0.547 4.547 9 H 0.061 0.939 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.969 3.031 13 H -0.272 1.272 14 H -0.262 1.262 15 H -0.280 1.280 16 C 0.003 3.997 17 C 0.114 3.886 18 H 0.084 0.916 19 O -0.567 6.567 20 H 0.059 0.941 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.058 0.942 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.025 0.975 29 H 0.061 0.939 30 H -0.012 1.012 31 H -0.009 1.009 32 H 0.264 0.736 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 15.858 3.019 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.064 4.064 3 C -0.190 4.190 4 C -0.091 4.091 5 N -0.248 5.248 6 C -0.059 4.059 7 C 0.003 3.997 8 C -0.586 4.586 9 H 0.079 0.921 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.793 3.207 13 H -0.197 1.197 14 H -0.186 1.186 15 H -0.206 1.206 16 C -0.125 4.125 17 C 0.055 3.945 18 H 0.101 0.899 19 O -0.374 6.374 20 H 0.078 0.922 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.080 0.920 30 H 0.006 0.994 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -3.831 15.690 2.659 16.368 hybrid contribution 1.670 -1.012 -0.025 1.953 sum -2.161 14.678 2.635 15.069 Atomic orbital electron populations 1.21406 0.92872 1.01145 1.01383 1.21420 0.97504 0.95486 0.91993 1.21853 1.00883 0.92981 1.03280 1.23346 1.00043 0.87969 0.97709 1.65349 1.41557 1.15443 1.02466 1.22148 0.92351 0.95177 0.96273 1.18842 0.94780 0.91100 0.95013 1.21632 1.25666 0.96381 1.14873 0.92114 1.26007 0.98261 0.98606 0.96863 1.70120 1.44646 1.11106 1.31348 0.85389 0.78734 0.78114 0.78439 1.19704 1.18616 1.20580 1.23850 0.97169 0.99345 0.92143 1.22639 0.87372 0.92441 0.92055 0.89877 1.86498 1.34134 1.72794 1.43955 0.92150 0.92031 0.94325 0.92254 0.90884 0.91129 0.93284 0.90159 0.95690 0.92012 0.99398 0.99066 0.92696 0.91745 0.93665 0.76269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.77 7.48 71.98 0.54 -2.24 16 2 C -0.06 -1.58 1.03 -51.28 -0.05 -1.63 16 3 C -0.13 -2.39 8.25 71.98 0.59 -1.80 16 4 C 0.04 1.11 5.58 86.45 0.48 1.59 16 5 N -0.52 -20.23 5.37 -881.50 -4.73 -24.96 16 6 C 0.07 3.04 4.75 86.30 0.41 3.45 16 7 C 0.04 2.23 5.03 29.85 0.15 2.38 16 8 C -0.55 -32.05 9.11 25.60 0.23 -31.82 16 9 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 10 C 0.00 0.03 5.46 84.66 0.46 0.50 16 11 N -0.93 -58.05 13.29 21.45 0.28 -57.76 16 12 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 16 C 0.00 0.12 5.47 86.45 0.47 0.59 16 17 C 0.11 3.02 4.04 31.49 0.13 3.15 16 18 H 0.08 1.79 7.71 -2.39 -0.02 1.77 16 19 O -0.57 -15.21 11.57 -148.98 -1.72 -16.94 16 20 H 0.06 1.42 7.90 -2.39 -0.02 1.40 16 21 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.04 1.18 7.90 -2.38 -0.02 1.17 16 23 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.37 7.68 -2.39 -0.02 1.36 16 27 H 0.08 2.35 7.86 -2.39 -0.02 2.33 16 28 H 0.02 1.08 7.88 -2.39 -0.02 1.06 16 29 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 30 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 31 H -0.01 -0.54 7.26 -2.39 -0.02 -0.55 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.06 2.45 7.69 -2.38 -0.02 2.44 16 34 H 0.05 1.53 7.82 -2.39 -0.02 1.51 16 35 H 0.39 7.74 9.09 -74.06 -0.67 7.07 16 Total: -1.00 -68.49 280.91 -0.36 -68.85 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.37 Total: 9.79 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.42 Total: -25.82 kcal Atomic # 7 Polarization: -78.27 SS G_CDS: -4.45 Total: -82.72 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -1.72 Total: -16.94 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.49 -0.36 -68.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306757668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.947 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds