Wall clock time and date at job start Sun Mar 29 2020 22:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00557 * 2 1 4 4 H 1.08001 * 120.00250 * 203.56015 * 3 2 1 5 5 C 1.38811 * 119.99886 * 23.55064 * 3 2 1 6 6 N 1.31618 * 119.99748 * 9.83957 * 5 3 2 7 7 Si 1.86800 * 120.00043 * 189.83614 * 5 3 2 8 8 H 1.48498 * 109.47173 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46798 * 120.00328 * 7 5 3 10 10 H 1.48502 * 109.46904 * 240.00273 * 7 5 3 11 11 C 1.46500 * 119.99687 * 180.02562 * 2 1 3 12 12 C 1.50700 * 110.67039 * 299.33569 * 11 2 1 13 13 O 1.20825 * 119.99919 * 148.23404 * 12 11 2 14 14 O 1.34223 * 120.00323 * 328.23793 * 12 11 2 15 15 C 1.54892 * 110.91461 * 175.99493 * 11 2 1 16 16 C 1.54265 * 104.19493 * 279.55005 * 15 11 2 17 17 C 1.53880 * 106.59898 * 336.38958 * 16 15 11 18 18 C 1.54272 * 106.59702 * 0.02562 * 17 16 15 19 19 H 1.09007 * 109.47064 * 275.96322 * 1 2 3 20 20 H 1.09000 * 109.46878 * 35.95242 * 1 2 3 21 21 H 1.08990 * 109.47856 * 155.95975 * 1 2 3 22 22 H 0.97006 * 119.99702 * 179.97438 * 6 5 3 23 23 H 0.96707 * 117.00582 * 179.97438 * 14 12 11 24 24 H 1.08999 * 110.48363 * 160.87666 * 15 11 2 25 25 H 1.08996 * 110.48832 * 38.23211 * 15 11 2 26 26 H 1.09001 * 110.03173 * 217.10584 * 16 15 11 27 27 H 1.09003 * 110.03299 * 95.67334 * 16 15 11 28 28 H 1.08998 * 110.02872 * 119.28180 * 17 16 15 29 29 H 1.08991 * 110.03551 * 240.66701 * 17 16 15 30 30 H 1.08998 * 110.48666 * 142.28557 * 18 17 16 31 31 H 1.08998 * 110.47938 * 264.92806 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1623 1.2248 -0.3738 5 6 1.5425 2.3380 0.4803 6 7 0.3899 2.2604 1.1110 7 14 2.3613 3.9985 0.2318 8 1 3.6395 3.8153 -0.5016 9 1 1.4621 4.8809 -0.5543 10 1 2.6328 4.6192 1.5532 11 6 2.1974 -1.2688 -0.0006 12 6 1.8651 -2.0754 1.2283 13 8 1.8654 -3.2825 1.1768 14 8 1.5687 -1.4529 2.3799 15 6 3.7238 -1.0260 -0.1015 16 6 3.9681 -0.7726 -1.6035 17 6 2.8047 -1.4410 -2.3569 18 6 1.8937 -2.0767 -1.2864 19 1 -0.3633 0.1068 1.0222 20 1 -0.3633 0.8319 -0.6034 21 1 -0.3634 -0.9384 -0.4186 22 1 -0.0343 3.0655 1.4470 23 1 1.3619 -2.0125 3.1409 24 1 4.2730 -1.9069 0.2309 25 1 4.0108 -0.1528 0.4843 26 1 4.9151 -1.2181 -1.9081 27 1 3.9769 0.2986 -1.8049 28 1 2.2490 -0.6942 -2.9238 29 1 3.1871 -2.2102 -3.0278 30 1 0.8455 -1.9704 -1.5655 31 1 2.1472 -3.1273 -1.1449 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306788805.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:17 Heat of formation + Delta-G solvation = -70.129128 kcal Electronic energy + Delta-G solvation = -15406.828773 eV Core-core repulsion = 12881.923064 eV Total energy + Delta-G solvation = -2524.905709 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83480 -37.51654 -35.30046 -33.92031 -30.91932 -28.56481 -27.84387 -25.54502 -22.82748 -22.26002 -19.81749 -18.68202 -17.33281 -16.48920 -16.28944 -15.42081 -14.51183 -14.21714 -13.74363 -13.21036 -12.74900 -12.52833 -12.08158 -11.38064 -11.32234 -11.05053 -10.80866 -10.73153 -10.63044 -10.56536 -10.46718 -10.31350 -9.96232 -9.80261 -9.61947 -9.53264 -8.57071 -6.81299 -5.73366 -3.21953 2.97026 3.36056 3.43409 3.45006 3.94281 4.45027 5.13590 5.19393 5.28604 5.50562 5.63021 5.96981 6.08587 6.18080 6.24135 6.26460 6.40951 6.48444 6.50492 6.73260 6.74495 6.85133 7.01026 7.25957 7.36228 7.75498 7.82284 8.32438 8.75437 9.19706 9.80632 10.29586 11.30602 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030930 B = 0.013717 C = 0.011389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.040374 B = 2040.843910 C = 2457.992604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.566 5.566 3 C -0.258 4.258 4 H 0.081 0.919 5 C 0.007 3.993 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.277 1.277 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.204 3.796 12 C 0.469 3.531 13 O -0.554 6.554 14 O -0.487 6.487 15 C -0.110 4.110 16 C -0.113 4.113 17 C -0.108 4.108 18 C -0.122 4.122 19 H 0.039 0.961 20 H 0.047 0.953 21 H -0.004 1.004 22 H 0.252 0.748 23 H 0.383 0.617 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -5.327 -2.875 7.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.288 5.288 3 C -0.387 4.387 4 H 0.099 0.901 5 C -0.192 4.192 6 N -0.544 5.544 7 Si 0.733 3.267 8 H -0.202 1.202 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.111 3.889 12 C 0.311 3.689 13 O -0.445 6.445 14 O -0.294 6.294 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.146 4.146 18 C -0.161 4.161 19 H 0.057 0.943 20 H 0.066 0.934 21 H 0.014 0.986 22 H 0.062 0.938 23 H 0.239 0.761 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.709 -5.209 -3.170 7.137 hybrid contribution 0.046 0.517 0.653 0.834 sum 3.755 -4.692 -2.517 6.516 Atomic orbital electron populations 1.20881 0.81950 0.95371 1.00181 1.43796 1.01695 0.99020 1.84272 1.19346 0.99393 0.84711 1.35218 0.90142 1.25116 0.97570 0.98578 0.97918 1.70092 1.17545 1.27104 1.39650 0.86207 0.78786 0.84307 0.77361 1.20210 1.21686 1.21726 1.20730 0.94026 0.87020 0.87120 1.25851 0.70631 0.87056 0.85400 1.90566 1.51103 1.17056 1.85763 1.84925 1.79918 1.44137 1.20370 1.22449 0.92578 1.02002 0.97761 1.22044 0.97152 1.01576 0.94317 1.21928 0.96394 0.98999 0.97274 1.22689 1.00273 0.98781 0.94379 0.94264 0.93431 0.98577 0.93809 0.76118 0.92338 0.88971 0.92841 0.90722 0.91592 0.92804 0.91413 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.30 59.85 0.50 4.42 16 2 N -0.57 -13.66 2.60 -165.24 -0.43 -14.09 16 3 C -0.26 -6.63 8.37 -15.06 -0.13 -6.75 16 4 H 0.08 1.98 4.54 -52.49 -0.24 1.74 16 5 C 0.01 0.19 5.17 -17.43 -0.09 0.10 16 6 N -0.90 -25.50 10.57 55.49 0.59 -24.91 16 7 Si 0.90 21.15 29.56 -169.99 -5.03 16.12 16 8 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 C 0.20 4.30 0.81 -130.99 -0.11 4.20 16 12 C 0.47 10.05 6.83 36.01 0.25 10.30 16 13 O -0.55 -12.19 16.59 -18.75 -0.31 -12.50 16 14 O -0.49 -10.11 13.10 -39.24 -0.51 -10.63 16 15 C -0.11 -2.08 5.25 -25.07 -0.13 -2.21 16 16 C -0.11 -1.90 6.29 -25.61 -0.16 -2.06 16 17 C -0.11 -1.79 6.78 -25.61 -0.17 -1.96 16 18 C -0.12 -2.27 5.68 -25.08 -0.14 -2.42 16 19 H 0.04 1.05 7.29 -51.93 -0.38 0.67 16 20 H 0.05 1.23 7.35 -51.93 -0.38 0.85 16 21 H 0.00 -0.10 6.62 -51.93 -0.34 -0.44 16 22 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.38 5.86 9.10 45.56 0.41 6.28 16 24 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 25 H 0.09 1.88 6.37 -51.93 -0.33 1.55 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.33 6.75 -51.93 -0.35 0.98 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 1.29 6.60 -51.93 -0.34 0.94 16 31 H 0.07 1.30 7.24 -51.93 -0.38 0.93 16 LS Contribution 249.85 15.07 3.77 3.77 Total: -1.00 -30.16 249.85 -5.26 -35.42 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -3.15 Total: 3.21 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -0.19 Total: 3.62 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.16 Total: -39.01 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.82 Total: -23.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.16 -5.26 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306788805.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.709 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds