Wall clock time and date at job start Sun Mar 29 2020 22:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00557 * 2 1 4 4 H 1.08001 * 120.00250 * 203.56015 * 3 2 1 5 5 C 1.38811 * 119.99886 * 23.55064 * 3 2 1 6 6 N 1.31618 * 119.99748 * 9.83957 * 5 3 2 7 7 Si 1.86800 * 120.00043 * 189.83614 * 5 3 2 8 8 H 1.48498 * 109.47173 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46798 * 120.00328 * 7 5 3 10 10 H 1.48502 * 109.46904 * 240.00273 * 7 5 3 11 11 C 1.46500 * 119.99687 * 180.02562 * 2 1 3 12 12 C 1.50700 * 110.67039 * 299.33569 * 11 2 1 13 13 O 1.20825 * 119.99919 * 148.23404 * 12 11 2 14 14 O 1.34223 * 120.00323 * 328.23793 * 12 11 2 15 15 C 1.54892 * 110.91461 * 175.99493 * 11 2 1 16 16 C 1.54265 * 104.19493 * 279.55005 * 15 11 2 17 17 C 1.53880 * 106.59898 * 336.38958 * 16 15 11 18 18 C 1.54272 * 106.59702 * 0.02562 * 17 16 15 19 19 H 1.09007 * 109.47064 * 275.96322 * 1 2 3 20 20 H 1.09000 * 109.46878 * 35.95242 * 1 2 3 21 21 H 1.08990 * 109.47856 * 155.95975 * 1 2 3 22 22 H 0.97006 * 119.99702 * 179.97438 * 6 5 3 23 23 H 0.96707 * 117.00582 * 179.97438 * 14 12 11 24 24 H 1.08999 * 110.48363 * 160.87666 * 15 11 2 25 25 H 1.08996 * 110.48832 * 38.23211 * 15 11 2 26 26 H 1.09001 * 110.03173 * 217.10584 * 16 15 11 27 27 H 1.09003 * 110.03299 * 95.67334 * 16 15 11 28 28 H 1.08998 * 110.02872 * 119.28180 * 17 16 15 29 29 H 1.08991 * 110.03551 * 240.66701 * 17 16 15 30 30 H 1.08998 * 110.48666 * 142.28557 * 18 17 16 31 31 H 1.08998 * 110.47938 * 264.92806 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1623 1.2248 -0.3738 5 6 1.5425 2.3380 0.4803 6 7 0.3899 2.2604 1.1110 7 14 2.3613 3.9985 0.2318 8 1 3.6395 3.8153 -0.5016 9 1 1.4621 4.8809 -0.5543 10 1 2.6328 4.6192 1.5532 11 6 2.1974 -1.2688 -0.0006 12 6 1.8651 -2.0754 1.2283 13 8 1.8654 -3.2825 1.1768 14 8 1.5687 -1.4529 2.3799 15 6 3.7238 -1.0260 -0.1015 16 6 3.9681 -0.7726 -1.6035 17 6 2.8047 -1.4410 -2.3569 18 6 1.8937 -2.0767 -1.2864 19 1 -0.3633 0.1068 1.0222 20 1 -0.3633 0.8319 -0.6034 21 1 -0.3634 -0.9384 -0.4186 22 1 -0.0343 3.0655 1.4470 23 1 1.3619 -2.0125 3.1409 24 1 4.2730 -1.9069 0.2309 25 1 4.0108 -0.1528 0.4843 26 1 4.9151 -1.2181 -1.9081 27 1 3.9769 0.2986 -1.8049 28 1 2.2490 -0.6942 -2.9238 29 1 3.1871 -2.2102 -3.0278 30 1 0.8455 -1.9704 -1.5655 31 1 2.1472 -3.1273 -1.1449 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306788805.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:17 Heat of formation + Delta-G solvation = -89.653494 kcal Electronic energy + Delta-G solvation = -15407.675413 eV Core-core repulsion = 12881.923064 eV Total energy + Delta-G solvation = -2525.752349 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.49406 -39.13172 -37.00215 -35.70776 -32.79789 -30.08351 -29.49759 -27.45954 -24.51391 -24.08088 -21.22483 -20.32751 -19.06703 -18.37662 -17.97466 -17.03024 -16.23026 -15.94401 -15.32796 -15.05094 -14.37608 -14.23522 -13.82912 -13.06632 -12.93695 -12.88062 -12.62573 -12.42580 -12.29104 -12.19470 -11.98410 -11.88869 -11.70426 -11.49819 -11.28992 -11.06971 -10.57960 -8.78386 -7.75014 -5.25183 1.28144 1.50641 1.52978 1.61705 2.39781 2.54319 3.36381 3.49475 3.77302 3.80180 4.23832 4.56215 4.63208 4.67733 4.68943 4.78805 4.90819 4.99914 5.07733 5.19007 5.26135 5.39100 5.40942 5.64746 5.66953 5.73855 5.82250 6.35664 7.11188 7.24024 7.87019 8.32127 9.28558 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.030930 B = 0.013717 C = 0.011389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.040374 B = 2040.843910 C = 2457.992604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.576 5.576 3 C -0.251 4.251 4 H 0.094 0.906 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.962 3.038 8 H -0.260 1.260 9 H -0.296 1.296 10 H -0.299 1.299 11 C 0.188 3.812 12 C 0.470 3.530 13 O -0.561 6.561 14 O -0.502 6.502 15 C -0.109 4.109 16 C -0.109 4.109 17 C -0.104 4.104 18 C -0.117 4.117 19 H 0.010 0.990 20 H 0.025 0.975 21 H 0.017 0.983 22 H 0.244 0.756 23 H 0.406 0.594 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -6.178 -3.955 9.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.298 5.298 3 C -0.380 4.380 4 H 0.111 0.889 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.792 3.208 8 H -0.183 1.183 9 H -0.224 1.224 10 H -0.226 1.226 11 C 0.096 3.904 12 C 0.312 3.688 13 O -0.453 6.453 14 O -0.312 6.312 15 C -0.147 4.147 16 C -0.146 4.146 17 C -0.141 4.141 18 C -0.156 4.156 19 H 0.028 0.972 20 H 0.044 0.956 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.265 0.735 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.335 -6.094 -4.252 9.147 hybrid contribution -0.442 0.670 1.034 1.309 sum 4.893 -5.424 -3.218 7.982 Atomic orbital electron populations 1.20555 0.82705 0.95411 0.98080 1.43876 1.01496 0.99978 1.84452 1.19737 0.99618 0.85264 1.33404 0.88882 1.25834 0.98364 1.01740 0.98637 1.70263 1.19124 1.27243 1.41611 0.85263 0.78433 0.80451 0.76701 1.18350 1.22351 1.22608 1.21102 0.95320 0.86060 0.87888 1.25724 0.70462 0.86910 0.85668 1.90559 1.51567 1.17147 1.86001 1.84872 1.79770 1.45226 1.21324 1.22479 0.90955 1.01961 0.99282 1.22038 0.98908 1.01110 0.92589 1.21930 0.95736 0.99539 0.96896 1.22675 1.00424 0.98942 0.93586 0.97175 0.95646 0.96474 0.94632 0.73548 0.90537 0.90881 0.89465 0.92055 0.92543 0.89515 0.92247 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.78 8.30 127.77 1.06 9.84 16 2 N -0.58 -27.53 2.60 -676.71 -1.76 -29.28 16 3 C -0.25 -12.76 8.37 84.03 0.70 -12.06 16 4 H 0.09 4.44 4.54 -2.91 -0.01 4.43 16 5 C -0.05 -2.73 5.17 84.86 0.44 -2.29 16 6 N -0.94 -54.23 10.57 21.65 0.23 -54.00 16 7 Si 0.96 43.60 29.56 68.60 2.03 45.63 16 8 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 9 H -0.30 -13.60 7.11 99.48 0.71 -12.90 16 10 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 11 C 0.19 7.62 0.81 4.14 0.00 7.63 16 12 C 0.47 19.49 6.83 71.24 0.49 19.98 16 13 O -0.56 -23.63 16.59 21.97 0.36 -23.26 16 14 O -0.50 -20.52 13.10 -51.34 -0.67 -21.19 16 15 C -0.11 -3.85 5.25 31.67 0.17 -3.69 16 16 C -0.11 -3.27 6.29 31.32 0.20 -3.08 16 17 C -0.10 -3.06 6.78 31.32 0.21 -2.85 16 18 C -0.12 -4.08 5.68 31.66 0.18 -3.90 16 19 H 0.01 0.55 7.29 -2.38 -0.02 0.53 16 20 H 0.02 1.33 7.35 -2.39 -0.02 1.31 16 21 H 0.02 0.75 6.62 -2.39 -0.02 0.73 16 22 H 0.24 13.89 8.31 -92.70 -0.77 13.12 16 23 H 0.41 12.02 9.10 -74.05 -0.67 11.34 16 24 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 25 H 0.07 2.85 6.37 -2.39 -0.02 2.84 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 2.01 6.75 -2.39 -0.02 1.99 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 30 H 0.06 2.15 6.60 -2.39 -0.02 2.13 16 31 H 0.08 2.66 7.24 -2.39 -0.02 2.64 16 Total: -1.00 -63.55 249.85 4.11 -59.44 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.47 Total: 13.10 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 3.45 Total: 9.58 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -1.53 Total: -83.29 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.31 Total: -44.46 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.55 4.11 -59.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306788805.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.211 kcal (2) G-P(sol) polarization free energy of solvation -63.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds