Wall clock time and date at job start Sun Mar 29 2020 21:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 110.55420 * 2 1 4 4 C 1.55005 * 110.61674 * 237.11867 * 2 1 3 5 5 C 1.54809 * 102.09266 * 204.48019 * 4 2 1 6 6 H 1.08991 * 110.60107 * 139.61436 * 5 4 2 7 7 C 1.53004 * 110.48442 * 262.20618 * 5 4 2 8 8 C 1.54097 * 104.18754 * 20.87722 * 5 4 2 9 9 H 1.09005 * 109.88111 * 242.45538 * 8 5 4 10 10 C 1.50708 * 109.87553 * 121.45748 * 8 5 4 11 11 O 1.21288 * 119.99815 * 245.30111 * 10 8 5 12 12 N 1.34774 * 119.99719 * 65.31046 * 10 8 5 13 13 C 1.37101 * 119.99349 * 180.02562 * 12 10 8 14 14 H 1.07991 * 120.00515 * 359.97438 * 13 12 10 15 15 C 1.38955 * 119.99490 * 179.97438 * 13 12 10 16 16 N 1.31413 * 120.00236 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48502 * 109.47194 * 300.00675 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00238 * 17 15 13 21 21 O 1.43742 * 107.42509 * 1.95965 * 8 5 4 22 22 H 1.09000 * 109.47490 * 182.87852 * 1 2 3 23 23 H 1.08998 * 109.47054 * 302.88301 * 1 2 3 24 24 H 1.09001 * 109.47240 * 62.88097 * 1 2 3 25 25 H 1.08995 * 110.90524 * 86.27352 * 4 2 1 26 26 H 1.09002 * 110.90452 * 322.68003 * 4 2 1 27 27 H 1.08996 * 109.47050 * 174.76730 * 7 5 4 28 28 H 1.09008 * 109.47063 * 294.76394 * 7 5 4 29 29 H 1.08999 * 109.47196 * 54.76632 * 7 5 4 30 30 H 0.96996 * 120.00564 * 359.97438 * 12 10 8 31 31 H 0.97001 * 119.99781 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7876 -1.2184 5 6 3.4794 -1.2158 -0.7254 6 1 3.6996 -2.2373 -1.0353 7 6 4.5478 -0.2556 -1.2520 8 6 3.3838 -1.1267 0.8101 9 1 4.0872 -0.3820 1.1827 10 6 3.6887 -2.4702 1.4212 11 8 2.8252 -3.0724 2.0236 12 7 4.9209 -3.0022 1.2985 13 6 5.1980 -4.2246 1.8541 14 1 4.4292 -4.7609 2.3903 15 6 6.4683 -4.7735 1.7272 16 7 7.4037 -4.1211 1.0742 17 14 6.8462 -6.4386 2.4847 18 1 8.2604 -6.7982 2.2095 19 1 6.6272 -6.3761 3.9522 20 1 5.9509 -7.4657 1.8941 21 8 2.0396 -0.7354 1.1357 22 1 -0.3634 -1.0263 0.0516 23 1 -0.3633 0.5579 0.8630 24 1 -0.3634 0.4685 -0.9147 25 1 2.1508 -0.1446 -2.0952 26 1 1.4548 -1.6585 -1.4284 27 1 5.5146 -0.5162 -0.8213 28 1 4.6015 -0.3320 -2.3381 29 1 4.2886 0.7654 -0.9719 30 1 5.6114 -2.5208 0.8166 31 1 8.2905 -4.5041 0.9860 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306813373.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:43 Heat of formation + Delta-G solvation = -120.108925 kcal Electronic energy + Delta-G solvation = -14622.521127 eV Core-core repulsion = 12095.448131 eV Total energy + Delta-G solvation = -2527.072996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.26380 -39.26824 -36.06725 -34.59159 -33.32957 -32.81349 -28.51772 -27.65283 -26.19359 -22.51063 -21.84374 -21.10137 -20.05473 -17.99290 -17.18488 -16.99008 -16.49476 -15.77009 -15.49509 -15.08247 -14.72639 -14.54077 -13.75864 -13.61111 -13.39757 -13.17626 -12.96738 -12.85538 -12.48746 -12.26929 -12.23272 -12.12208 -11.66602 -11.54105 -11.50991 -10.87882 -10.17011 -10.08619 -8.51444 -6.01641 1.36898 1.39808 1.51155 1.92375 2.23395 2.63230 3.11804 3.30058 3.53159 3.86216 3.87252 4.11334 4.23699 4.38429 4.44274 4.46944 4.68411 4.81186 4.85804 4.90483 5.04144 5.14634 5.19743 5.29797 5.35832 5.37630 5.84633 6.03745 6.53756 7.05531 7.45853 8.02063 8.65525 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.050814 B = 0.007959 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.899705 B = 3517.309280 C = 3888.420019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.057 3.943 3 H 0.094 0.906 4 C -0.136 4.136 5 C -0.116 4.116 6 H 0.062 0.938 7 C -0.137 4.137 8 C 0.080 3.920 9 H 0.096 0.904 10 C 0.431 3.569 11 O -0.630 6.630 12 N -0.559 5.559 13 C -0.343 4.343 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.915 5.915 17 Si 0.995 3.005 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.272 1.272 21 O -0.383 6.383 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.398 0.602 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.782 9.778 -7.868 13.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.000 4.000 3 H 0.112 0.888 4 C -0.173 4.173 5 C -0.136 4.136 6 H 0.080 0.920 7 C -0.194 4.194 8 C 0.019 3.981 9 H 0.114 0.886 10 C 0.218 3.782 11 O -0.518 6.518 12 N -0.197 5.197 13 C -0.472 4.472 14 H 0.095 0.905 15 C -0.208 4.208 16 N -0.555 5.555 17 Si 0.818 3.182 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.197 1.197 21 O -0.302 6.302 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.138 0.862 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.233 0.767 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.256 9.298 -7.321 12.949 hybrid contribution 0.723 -0.820 0.300 1.134 sum -4.533 8.478 -7.021 11.905 Atomic orbital electron populations 1.21792 0.92041 1.02288 1.03794 1.23572 0.96339 0.95843 0.84199 0.88798 1.23243 0.93871 1.00849 0.99326 1.22493 0.98465 1.01275 0.91327 0.91978 1.21841 0.96681 0.98595 1.02256 1.22553 0.86380 0.92928 0.96260 0.88611 1.20859 0.82975 0.89312 0.85016 1.90475 1.48046 1.65112 1.48133 1.41786 1.10275 1.18610 1.49001 1.19661 0.97590 0.96448 1.33548 0.90544 1.26067 0.94372 1.03259 0.97061 1.69656 1.04240 1.40353 1.41222 0.84967 0.77776 0.76914 0.78537 1.18920 1.19723 1.19675 1.89009 1.27127 1.73772 1.40283 0.93664 0.91887 0.87837 0.86215 0.91689 0.92851 0.89929 0.90336 0.76714 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.66 71.98 0.70 -2.54 16 2 C 0.06 1.54 3.98 31.28 0.12 1.67 16 3 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.14 -3.42 6.15 31.90 0.20 -3.22 16 5 C -0.12 -3.64 3.25 -9.80 -0.03 -3.67 16 6 H 0.06 2.29 7.69 -2.39 -0.02 2.27 16 7 C -0.14 -3.18 8.91 71.98 0.64 -2.54 16 8 C 0.08 3.19 3.51 30.22 0.11 3.30 16 9 H 0.10 3.43 7.69 -2.38 -0.02 3.41 16 10 C 0.43 22.85 6.90 87.66 0.60 23.45 16 11 O -0.63 -39.49 16.10 15.66 0.25 -39.24 16 12 N -0.56 -30.28 5.26 -306.98 -1.62 -31.89 16 13 C -0.34 -20.26 9.68 84.04 0.81 -19.44 16 14 H 0.08 4.83 7.16 -2.92 -0.02 4.81 16 15 C -0.01 -0.38 5.50 84.93 0.47 0.09 16 16 N -0.91 -49.45 13.05 21.66 0.28 -49.17 16 17 Si 1.00 43.39 29.55 68.60 2.03 45.42 16 18 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 O -0.38 -15.48 10.46 -130.27 -1.36 -16.84 16 22 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.12 2.04 7.86 -2.39 -0.02 2.02 16 26 H 0.06 1.79 8.06 -2.39 -0.02 1.77 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.40 20.14 7.90 -92.71 -0.73 19.41 16 31 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -72.78 264.93 3.59 -69.20 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.39 Total: 25.43 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 3.62 Total: -2.91 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.33 Total: -81.06 kcal Atomic # 8 Polarization: -54.96 SS G_CDS: -1.11 Total: -56.08 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.78 3.59 -69.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306813373.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.914 kcal (2) G-P(sol) polarization free energy of solvation -72.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds