Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.27311 * 2 1 4 4 C 1.54953 * 110.31219 * 237.80408 * 2 1 3 5 5 C 1.55446 * 100.98934 * 204.69172 * 4 2 1 6 6 H 1.09013 * 110.83195 * 275.89193 * 5 4 2 7 7 C 1.53000 * 110.92703 * 152.22909 * 5 4 2 8 8 C 1.54384 * 102.18954 * 34.03562 * 5 4 2 9 9 H 1.08996 * 109.82732 * 98.30040 * 8 5 4 10 10 C 1.50698 * 109.83216 * 219.18695 * 8 5 4 11 11 O 1.21293 * 120.00006 * 114.81592 * 10 8 5 12 12 N 1.34777 * 119.99538 * 294.80935 * 10 8 5 13 13 C 1.37104 * 119.99773 * 179.72591 * 12 10 8 14 14 H 1.08002 * 119.99671 * 0.27660 * 13 12 10 15 15 C 1.38950 * 120.00030 * 180.27703 * 13 12 10 16 16 N 1.31414 * 119.99926 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99969 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47425 * 90.00231 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00087 * 17 15 13 20 20 H 1.48505 * 109.47256 * 330.00093 * 17 15 13 21 21 O 1.43241 * 107.66040 * 338.74262 * 8 5 4 22 22 H 1.08994 * 109.47267 * 299.36154 * 1 2 3 23 23 H 1.09002 * 109.46550 * 59.36818 * 1 2 3 24 24 H 1.08999 * 109.46878 * 179.36204 * 1 2 3 25 25 H 1.09000 * 111.12093 * 322.55642 * 4 2 1 26 26 H 1.08995 * 111.12248 * 86.67413 * 4 2 1 27 27 H 1.09001 * 109.46472 * 307.20548 * 7 5 4 28 28 H 1.08996 * 109.47357 * 67.20072 * 7 5 4 29 29 H 1.08997 * 109.47296 * 187.20302 * 7 5 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 31 31 H 0.96999 * 119.99863 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0679 -0.7743 -1.2297 5 6 3.4710 -1.2053 -0.7180 6 1 4.1993 -0.4077 -0.8654 7 6 3.9289 -2.4958 -1.4005 8 6 3.2113 -1.4412 0.7855 9 1 3.0631 -2.5047 0.9727 10 6 4.3813 -0.9385 1.5914 11 8 4.2378 -0.0034 2.3505 12 7 5.5870 -1.5282 1.4688 13 6 6.6528 -1.0673 2.1978 14 1 6.5250 -0.2346 2.8736 15 6 7.8972 -1.6715 2.0671 16 7 8.0527 -2.6843 1.2444 17 14 9.3491 -1.0440 3.0609 18 1 9.4110 -1.7661 4.3569 19 1 10.6051 -1.2774 2.3038 20 1 9.1855 0.4105 3.3120 21 8 2.0286 -0.7156 1.1413 22 1 -0.3633 0.5038 0.8956 23 1 -0.3632 0.5236 -0.8843 24 1 -0.3633 -1.0276 -0.0114 25 1 1.4472 -1.6430 -1.4492 26 1 2.1490 -0.1225 -2.0996 27 1 3.1565 -3.2573 -1.2931 28 1 4.1055 -2.3042 -2.4588 29 1 4.8509 -2.8453 -0.9358 30 1 5.7018 -2.2758 0.8616 31 1 8.9213 -3.1064 1.1535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306813385.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = -98.681193 kcal Electronic energy + Delta-G solvation = -14643.499974 eV Core-core repulsion = 12117.356154 eV Total energy + Delta-G solvation = -2526.143820 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74756 -37.34463 -34.00010 -33.25812 -31.82779 -31.03385 -26.74839 -26.71272 -24.30376 -21.07655 -20.60262 -19.15992 -17.89849 -16.96802 -15.46201 -15.23997 -14.59684 -14.23008 -13.90805 -13.46747 -13.18113 -12.77146 -12.64537 -12.21520 -12.00097 -11.78437 -11.54019 -11.16944 -11.05259 -10.91475 -10.51871 -10.38742 -10.33483 -10.17338 -9.54865 -9.44378 -8.09359 -7.95566 -6.41032 -3.81599 3.18519 3.27211 3.33374 3.80203 4.04802 4.25937 4.65733 4.85646 4.88195 5.28596 5.34545 5.39318 5.44070 5.51142 5.66561 5.70213 5.78962 5.90684 6.04776 6.10653 6.17228 6.21204 6.32600 6.51508 6.52145 7.40813 7.56217 8.07179 8.63341 9.19126 9.55019 10.07394 10.76705 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052310 B = 0.008019 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.141370 B = 3490.814024 C = 3880.867999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.068 0.932 4 C -0.146 4.146 5 C -0.116 4.116 6 H 0.089 0.911 7 C -0.143 4.143 8 C 0.077 3.923 9 H 0.090 0.910 10 C 0.430 3.570 11 O -0.580 6.580 12 N -0.560 5.560 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.930 3.070 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.270 1.270 21 O -0.351 6.351 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.392 0.608 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 -0.147 -7.543 11.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.086 0.914 4 C -0.184 4.184 5 C -0.135 4.135 6 H 0.107 0.893 7 C -0.200 4.200 8 C 0.016 3.984 9 H 0.107 0.893 10 C 0.215 3.785 11 O -0.464 6.464 12 N -0.198 5.198 13 C -0.429 4.429 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.757 3.243 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 O -0.269 6.269 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.226 0.774 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.182 0.380 -6.862 11.469 hybrid contribution 1.026 -0.212 -0.080 1.051 sum -8.157 0.168 -6.942 10.712 Atomic orbital electron populations 1.21853 0.94043 1.02449 1.02083 1.22942 0.94387 0.96058 0.85160 0.91383 1.23418 0.96024 1.00623 0.98313 1.22702 0.97524 0.99785 0.93482 0.89276 1.21761 1.02009 0.95755 1.00458 1.22599 0.86150 0.96235 0.93444 0.89257 1.20212 0.84294 0.86765 0.87180 1.90522 1.84041 1.30660 1.41153 1.41875 1.07355 1.31147 1.39441 1.19733 0.86853 1.15593 1.20765 0.87940 1.25251 0.98949 0.96139 0.97529 1.69608 1.25396 1.22588 1.36746 0.85851 0.79885 0.79328 0.79200 1.20368 1.20908 1.19427 1.88470 1.40179 1.64756 1.33467 0.91927 0.91582 0.92132 0.90320 0.90214 0.92422 0.92162 0.91234 0.77396 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.62 37.16 0.36 -1.41 16 2 C 0.07 1.12 4.08 -25.70 -0.10 1.01 16 3 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 4 C -0.15 -1.91 6.04 -24.40 -0.15 -2.06 16 5 C -0.12 -1.86 3.10 -88.60 -0.27 -2.13 16 6 H 0.09 1.58 7.84 -51.92 -0.41 1.18 16 7 C -0.14 -1.97 9.15 37.16 0.34 -1.63 16 8 C 0.08 1.53 3.55 -27.16 -0.10 1.43 16 9 H 0.09 1.63 7.81 -51.93 -0.41 1.23 16 10 C 0.43 10.93 6.98 -10.99 -0.08 10.85 16 11 O -0.58 -17.18 16.10 -14.11 -0.23 -17.41 16 12 N -0.56 -14.62 5.26 -10.96 -0.06 -14.68 16 13 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 14 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 15 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 16 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 17 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 O -0.35 -7.08 10.25 -54.88 -0.56 -7.64 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.70 8.10 -51.93 -0.42 0.27 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.08 6.89 -51.93 -0.36 0.73 16 30 H 0.39 9.63 6.65 -40.82 -0.27 9.36 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 262.77 15.07 3.96 3.96 Total: -1.00 -32.44 262.77 -5.75 -38.19 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.32 Total: 7.30 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.24 Total: -2.11 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.67 Total: -38.52 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.79 Total: -25.05 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.44 -5.75 -38.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306813385.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.494 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds