Wall clock time and date at job start Sun Mar 29 2020 21:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.27311 * 2 1 4 4 C 1.54953 * 110.31219 * 237.80408 * 2 1 3 5 5 C 1.55446 * 100.98934 * 204.69172 * 4 2 1 6 6 H 1.09013 * 110.83195 * 275.89193 * 5 4 2 7 7 C 1.53000 * 110.92703 * 152.22909 * 5 4 2 8 8 C 1.54384 * 102.18954 * 34.03562 * 5 4 2 9 9 H 1.08996 * 109.82732 * 98.30040 * 8 5 4 10 10 C 1.50698 * 109.83216 * 219.18695 * 8 5 4 11 11 O 1.21293 * 120.00006 * 114.81592 * 10 8 5 12 12 N 1.34777 * 119.99538 * 294.80935 * 10 8 5 13 13 C 1.37104 * 119.99773 * 179.72591 * 12 10 8 14 14 H 1.08002 * 119.99671 * 0.27660 * 13 12 10 15 15 C 1.38950 * 120.00030 * 180.27703 * 13 12 10 16 16 N 1.31414 * 119.99926 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99969 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47425 * 90.00231 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00087 * 17 15 13 20 20 H 1.48505 * 109.47256 * 330.00093 * 17 15 13 21 21 O 1.43241 * 107.66040 * 338.74262 * 8 5 4 22 22 H 1.08994 * 109.47267 * 299.36154 * 1 2 3 23 23 H 1.09002 * 109.46550 * 59.36818 * 1 2 3 24 24 H 1.08999 * 109.46878 * 179.36204 * 1 2 3 25 25 H 1.09000 * 111.12093 * 322.55642 * 4 2 1 26 26 H 1.08995 * 111.12248 * 86.67413 * 4 2 1 27 27 H 1.09001 * 109.46472 * 307.20548 * 7 5 4 28 28 H 1.08996 * 109.47357 * 67.20072 * 7 5 4 29 29 H 1.08997 * 109.47296 * 187.20302 * 7 5 4 30 30 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 31 31 H 0.96999 * 119.99863 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0679 -0.7743 -1.2297 5 6 3.4710 -1.2053 -0.7180 6 1 4.1993 -0.4077 -0.8654 7 6 3.9289 -2.4958 -1.4005 8 6 3.2113 -1.4412 0.7855 9 1 3.0631 -2.5047 0.9727 10 6 4.3813 -0.9385 1.5914 11 8 4.2378 -0.0034 2.3505 12 7 5.5870 -1.5282 1.4688 13 6 6.6528 -1.0673 2.1978 14 1 6.5250 -0.2346 2.8736 15 6 7.8972 -1.6715 2.0671 16 7 8.0527 -2.6843 1.2444 17 14 9.3491 -1.0440 3.0609 18 1 9.4110 -1.7661 4.3569 19 1 10.6051 -1.2774 2.3038 20 1 9.1855 0.4105 3.3120 21 8 2.0286 -0.7156 1.1413 22 1 -0.3633 0.5038 0.8956 23 1 -0.3632 0.5236 -0.8843 24 1 -0.3633 -1.0276 -0.0114 25 1 1.4472 -1.6430 -1.4492 26 1 2.1490 -0.1225 -2.0996 27 1 3.1565 -3.2573 -1.2931 28 1 4.1055 -2.3042 -2.4588 29 1 4.8509 -2.8453 -0.9358 30 1 5.7018 -2.2758 0.8616 31 1 8.9213 -3.1064 1.1535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306813385.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:49 Heat of formation + Delta-G solvation = -121.158027 kcal Electronic energy + Delta-G solvation = -14644.474643 eV Core-core repulsion = 12117.356154 eV Total energy + Delta-G solvation = -2527.118489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.28447 -39.21951 -36.07609 -34.67020 -33.31099 -32.84952 -28.43403 -27.75780 -26.20105 -22.35274 -21.97797 -20.95874 -19.96741 -18.53748 -17.10497 -16.92717 -16.43344 -15.79829 -15.42986 -15.24636 -14.78792 -14.12038 -14.02614 -13.58245 -13.31474 -13.06880 -12.96711 -12.85974 -12.47878 -12.35280 -12.24393 -12.13596 -11.75905 -11.57006 -11.46893 -10.99769 -10.08014 -10.03026 -8.51396 -6.01369 1.34906 1.39629 1.52685 1.92487 2.24872 2.66954 3.11040 3.23899 3.47395 3.76259 3.95736 4.09118 4.25425 4.36091 4.41363 4.52469 4.67658 4.77692 4.87954 4.96067 5.03508 5.09317 5.26538 5.31627 5.35870 5.36802 5.88487 6.08678 6.54725 7.06227 7.47315 8.03462 8.65672 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052310 B = 0.008019 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.141370 B = 3490.814024 C = 3880.867999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.055 3.945 3 H 0.050 0.950 4 C -0.128 4.128 5 C -0.113 4.113 6 H 0.063 0.937 7 C -0.137 4.137 8 C 0.082 3.918 9 H 0.108 0.892 10 C 0.419 3.581 11 O -0.634 6.634 12 N -0.560 5.560 13 C -0.343 4.343 14 H 0.075 0.925 15 C -0.007 4.007 16 N -0.914 5.914 17 Si 0.995 3.005 18 H -0.269 1.269 19 H -0.265 1.265 20 H -0.275 1.275 21 O -0.381 6.381 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.399 0.601 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.569 -1.046 -9.218 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.002 4.002 3 H 0.068 0.932 4 C -0.165 4.165 5 C -0.132 4.132 6 H 0.081 0.919 7 C -0.194 4.194 8 C 0.021 3.979 9 H 0.125 0.875 10 C 0.206 3.794 11 O -0.521 6.521 12 N -0.198 5.198 13 C -0.472 4.472 14 H 0.093 0.907 15 C -0.208 4.208 16 N -0.555 5.555 17 Si 0.818 3.182 18 H -0.195 1.195 19 H -0.190 1.190 20 H -0.200 1.200 21 O -0.300 6.300 22 H 0.070 0.930 23 H 0.116 0.884 24 H 0.089 0.911 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.234 0.766 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.600 -0.553 -8.572 12.882 hybrid contribution 1.151 0.083 0.443 1.236 sum -8.449 -0.470 -8.129 11.734 Atomic orbital electron populations 1.21839 0.91093 1.03506 1.03158 1.23308 0.96696 0.95116 0.85089 0.93225 1.23411 0.93629 1.01678 0.97752 1.22684 0.99108 1.00393 0.91051 0.91876 1.21745 1.01522 0.94888 1.01231 1.22589 0.83894 0.96549 0.94864 0.87491 1.21367 0.85450 0.85799 0.86746 1.90469 1.85083 1.33018 1.43548 1.41901 1.07428 1.31245 1.39232 1.19696 0.88705 1.16440 1.22400 0.90672 1.26060 1.00770 0.95886 0.98078 1.69659 1.26546 1.22554 1.36694 0.84909 0.76816 0.78379 0.78098 1.19478 1.18973 1.19976 1.88448 1.39873 1.65224 1.36453 0.92962 0.88389 0.91076 0.87532 0.87517 0.90015 0.89778 0.93676 0.76628 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.62 71.98 0.69 -2.30 16 2 C 0.05 1.63 4.08 31.26 0.13 1.76 16 3 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.13 -2.93 6.04 32.10 0.19 -2.74 16 5 C -0.11 -3.49 3.10 -9.48 -0.03 -3.52 16 6 H 0.06 2.26 7.84 -2.38 -0.02 2.24 16 7 C -0.14 -3.44 9.15 71.98 0.66 -2.78 16 8 C 0.08 3.28 3.55 30.32 0.11 3.39 16 9 H 0.11 3.84 7.81 -2.39 -0.02 3.82 16 10 C 0.42 22.17 6.98 87.66 0.61 22.78 16 11 O -0.63 -39.63 16.10 15.72 0.25 -39.38 16 12 N -0.56 -30.30 5.26 -306.98 -1.62 -31.91 16 13 C -0.34 -20.28 9.68 84.04 0.81 -19.47 16 14 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 15 C -0.01 -0.40 5.50 84.93 0.47 0.07 16 16 N -0.91 -49.37 13.05 21.66 0.28 -49.09 16 17 Si 0.99 43.45 29.55 68.60 2.03 45.48 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 21 O -0.38 -15.47 10.25 -130.19 -1.33 -16.80 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.11 1.92 7.92 -2.39 -0.02 1.90 16 26 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 1.67 8.10 -2.39 -0.02 1.65 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.35 6.89 -2.39 -0.02 1.34 16 30 H 0.40 20.07 6.65 -92.71 -0.62 19.45 16 31 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -72.83 262.77 3.76 -69.07 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.50 Total: 25.44 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 3.64 Total: -2.82 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.33 Total: -81.00 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -1.08 Total: -56.18 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.83 3.76 -69.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306813385.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.086 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds