Wall clock time and date at job start Sun Mar 29 2020 21:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.54958 * 2 1 4 4 C 1.54995 * 110.61786 * 237.12667 * 2 1 3 5 5 C 1.54813 * 102.09395 * 204.47400 * 4 2 1 6 6 H 1.08998 * 110.59891 * 262.14973 * 5 4 2 7 7 C 1.52997 * 110.49130 * 139.55353 * 5 4 2 8 8 C 1.54101 * 104.18404 * 20.87631 * 5 4 2 9 9 H 1.09006 * 109.87868 * 242.45658 * 8 5 4 10 10 C 1.50706 * 109.87786 * 121.45952 * 8 5 4 11 11 O 1.21296 * 119.99647 * 245.30813 * 10 8 5 12 12 N 1.34768 * 119.99980 * 65.30110 * 10 8 5 13 13 C 1.37105 * 119.99688 * 180.02562 * 12 10 8 14 14 H 1.07990 * 120.00043 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99742 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00032 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99879 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47101 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47182 * 119.99739 * 17 15 13 20 20 H 1.48504 * 109.46943 * 239.99761 * 17 15 13 21 21 O 1.43738 * 107.42194 * 1.95822 * 8 5 4 22 22 H 1.09000 * 109.46519 * 182.87493 * 1 2 3 23 23 H 1.08997 * 109.47224 * 302.87160 * 1 2 3 24 24 H 1.08999 * 109.47352 * 62.87859 * 1 2 3 25 25 H 1.08997 * 110.91456 * 86.27615 * 4 2 1 26 26 H 1.09004 * 110.91024 * 322.66638 * 4 2 1 27 27 H 1.08997 * 109.47307 * 305.23541 * 7 5 4 28 28 H 1.08998 * 109.46790 * 65.23384 * 7 5 4 29 29 H 1.09003 * 109.46657 * 185.23432 * 7 5 4 30 30 H 0.97000 * 120.00336 * 0.02562 * 12 10 8 31 31 H 0.96997 * 119.99652 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0758 -0.7874 -1.2184 5 6 3.4795 -1.2156 -0.7255 6 1 4.2423 -0.5331 -1.1004 7 6 3.7855 -2.6500 -1.1608 8 6 3.3840 -1.1266 0.8100 9 1 4.0873 -0.3818 1.1826 10 6 3.6890 -2.4700 1.4211 11 8 2.8255 -3.0724 2.0234 12 7 4.9211 -3.0020 1.2983 13 6 5.1984 -4.2244 1.8538 14 1 4.4294 -4.7610 2.3894 15 6 6.4689 -4.7727 1.7276 16 7 7.4046 -4.1199 1.0754 17 14 6.8466 -6.4385 2.4839 18 1 5.6321 -6.9625 3.1588 19 1 7.2669 -7.3825 1.4174 20 1 7.9412 -6.2945 3.4771 21 8 2.0397 -0.7354 1.1356 22 1 -0.3632 -1.0264 0.0515 23 1 -0.3633 0.5578 0.8631 24 1 -0.3634 0.4685 -0.9146 25 1 2.1509 -0.1444 -2.0953 26 1 1.4550 -1.6584 -1.4285 27 1 2.9907 -3.3116 -0.8165 28 1 3.8494 -2.6939 -2.2480 29 1 4.7346 -2.9664 -0.7279 30 1 5.6117 -2.5201 0.8169 31 1 8.2915 -4.5025 0.9877 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306813392.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:52 Heat of formation + Delta-G solvation = -108.681440 kcal Electronic energy + Delta-G solvation = -14813.208195 eV Core-core repulsion = 12286.630731 eV Total energy + Delta-G solvation = -2526.577463 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.38867 -39.19624 -36.10154 -34.65255 -33.26006 -32.73833 -28.33798 -27.79150 -26.23572 -22.39962 -22.13710 -20.73125 -19.89678 -18.04660 -17.46176 -16.95899 -16.41880 -15.79735 -15.32317 -15.22906 -15.14544 -14.07937 -13.64131 -13.49047 -13.38608 -13.24350 -12.97242 -12.96072 -12.44315 -12.24363 -12.13544 -12.01278 -11.76087 -11.63148 -11.40085 -10.81503 -10.13338 -9.97909 -8.48815 -5.97120 1.34839 1.40967 1.54890 1.96958 2.24973 2.65485 3.15665 3.32764 3.52452 3.78911 3.90197 4.19660 4.26182 4.41635 4.46145 4.50985 4.67812 4.75789 4.83344 4.92578 5.03615 5.06371 5.26011 5.30269 5.38705 5.41711 5.87686 6.06996 6.57122 7.09647 7.49661 8.06112 8.68496 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059682 B = 0.008052 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.037318 B = 3476.406571 C = 3689.077641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 H 0.095 0.905 4 C -0.135 4.135 5 C -0.109 4.109 6 H 0.121 0.879 7 C -0.152 4.152 8 C 0.071 3.929 9 H 0.098 0.902 10 C 0.443 3.557 11 O -0.631 6.631 12 N -0.558 5.558 13 C -0.336 4.336 14 H 0.074 0.926 15 C -0.007 4.007 16 N -0.915 5.915 17 Si 0.991 3.009 18 H -0.277 1.277 19 H -0.268 1.268 20 H -0.269 1.269 21 O -0.383 6.383 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.120 0.880 26 H 0.065 0.935 27 H 0.024 0.976 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.399 0.601 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 8.870 -7.886 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.002 4.002 3 H 0.112 0.888 4 C -0.173 4.173 5 C -0.128 4.128 6 H 0.139 0.861 7 C -0.210 4.210 8 C 0.010 3.990 9 H 0.115 0.885 10 C 0.231 3.769 11 O -0.518 6.518 12 N -0.197 5.197 13 C -0.465 4.465 14 H 0.092 0.908 15 C -0.207 4.207 16 N -0.556 5.556 17 Si 0.815 3.185 18 H -0.202 1.202 19 H -0.193 1.193 20 H -0.194 1.194 21 O -0.302 6.302 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.138 0.862 26 H 0.084 0.916 27 H 0.043 0.957 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.235 0.765 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.529 8.384 -7.330 12.434 hybrid contribution 0.717 -0.787 0.332 1.116 sum -4.812 7.597 -6.998 11.395 Atomic orbital electron populations 1.21784 0.92154 1.02204 1.03741 1.23581 0.96329 0.95891 0.84350 0.88752 1.23275 0.93994 1.00815 0.99171 1.22530 1.00306 0.98660 0.91256 0.86089 1.22107 1.01631 0.95134 1.02120 1.22644 0.86418 0.93310 0.96654 0.88495 1.20629 0.82973 0.89023 0.84304 1.90484 1.48110 1.65073 1.48122 1.41958 1.10239 1.18505 1.48990 1.19660 0.97320 0.96341 1.33184 0.90788 1.25982 0.94478 1.03023 0.97226 1.69661 1.04180 1.40173 1.41540 0.84898 0.78085 0.77268 0.78242 1.20176 1.19288 1.19418 1.89009 1.27153 1.73803 1.40256 0.93757 0.91961 0.87870 0.86209 0.91636 0.95693 0.90101 0.92211 0.76503 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.66 71.98 0.70 -2.53 16 2 C 0.06 1.47 3.97 31.28 0.12 1.60 16 3 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.14 -3.32 6.14 31.90 0.20 -3.12 16 5 C -0.11 -3.28 3.64 -9.80 -0.04 -3.31 16 6 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 7 C -0.15 -5.47 7.92 71.98 0.57 -4.90 16 8 C 0.07 2.78 3.84 30.22 0.12 2.90 16 9 H 0.10 3.36 8.14 -2.38 -0.02 3.34 16 10 C 0.44 22.94 5.51 87.66 0.48 23.42 16 11 O -0.63 -39.01 16.10 15.63 0.25 -38.76 16 12 N -0.56 -29.37 3.57 -306.98 -1.10 -30.47 16 13 C -0.34 -19.47 9.68 84.04 0.81 -18.66 16 14 H 0.07 4.65 7.16 -2.92 -0.02 4.63 16 15 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 16 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 17 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 O -0.38 -15.34 10.46 -130.27 -1.36 -16.70 16 22 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.79 7.76 -2.38 -0.02 1.77 16 27 H 0.02 1.03 7.58 -2.39 -0.02 1.02 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.06 2.50 5.19 -2.39 -0.01 2.48 16 30 H 0.40 19.66 6.93 -92.71 -0.64 19.02 16 31 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -71.83 257.97 4.01 -67.81 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.48 Total: 25.89 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 3.43 Total: -4.50 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -0.81 Total: -79.03 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -1.11 Total: -55.46 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.83 4.01 -67.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306813392.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.867 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds