Wall clock time and date at job start Sun Mar 29 2020 22:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 110.99796 * 2 1 4 4 C 1.50700 * 109.47268 * 66.04393 * 3 2 1 5 5 H 1.08000 * 120.00092 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99957 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99830 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46881 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.47191 * 209.99817 * 8 6 4 11 11 H 1.48499 * 109.47147 * 330.00347 * 8 6 4 12 12 C 1.46903 * 111.00343 * 236.04537 * 2 1 3 13 13 H 1.08995 * 111.01826 * 61.18420 * 12 2 1 14 14 C 1.54945 * 111.12590 * 185.40841 * 12 2 1 15 15 O 1.43645 * 105.13541 * 154.36345 * 14 12 2 16 16 C 1.43240 * 109.97179 * 335.57081 * 15 14 12 17 17 C 1.52997 * 109.83111 * 121.22531 * 16 15 14 18 18 C 1.53002 * 109.82975 * 242.19786 * 16 15 14 19 19 C 1.54381 * 107.58517 * 1.71070 * 16 15 14 20 20 H 1.08997 * 109.46948 * 183.95385 * 1 2 3 21 21 H 1.08998 * 109.47242 * 303.95231 * 1 2 3 22 22 H 1.08993 * 109.47061 * 63.95809 * 1 2 3 23 23 H 1.09001 * 109.47164 * 186.04236 * 3 2 1 24 24 H 1.09003 * 109.47393 * 306.04582 * 3 2 1 25 25 H 0.96997 * 120.00303 * 179.97438 * 7 6 4 26 26 H 1.09004 * 110.31131 * 35.44606 * 14 12 2 27 27 H 1.09001 * 110.30800 * 273.28040 * 14 12 2 28 28 H 1.09005 * 109.47000 * 61.44901 * 17 16 15 29 29 H 1.08993 * 109.47190 * 181.45242 * 17 16 15 30 30 H 1.09006 * 109.46973 * 301.45820 * 17 16 15 31 31 H 1.09007 * 109.46957 * 58.54378 * 18 16 15 32 32 H 1.08989 * 109.47055 * 178.54724 * 18 16 15 33 33 H 1.09001 * 109.47236 * 298.55072 * 18 16 15 34 34 H 1.09006 * 110.84233 * 139.54764 * 19 16 15 35 35 H 1.09000 * 110.84827 * 263.16409 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0275 3.3492 1.5288 7 7 2.7127 4.0016 0.6154 8 14 1.5836 4.1865 3.1386 9 1 2.6605 3.9495 4.1333 10 1 1.4319 5.6463 2.9119 11 1 0.3057 3.6295 3.6504 12 6 1.9955 -0.7660 -1.1376 13 1 1.6778 -0.3286 -2.0840 14 6 3.5389 -0.8821 -1.0661 15 8 3.8590 -2.0796 -1.7921 16 6 2.7330 -2.9649 -1.7962 17 6 2.3090 -3.2588 -3.2366 18 6 3.0958 -4.2694 -1.0837 19 6 1.5829 -2.2603 -1.0451 20 1 -0.3633 -1.0252 0.0709 21 1 -0.3633 0.5739 0.8524 22 1 -0.3633 0.4511 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5610 1.9274 -0.8309 25 1 2.9872 4.9177 0.7773 26 1 3.8642 -0.9698 -0.0295 27 1 4.0056 -0.0174 -1.5380 28 1 3.1275 -3.7494 -3.7634 29 1 1.4364 -3.9120 -3.2324 30 1 2.0611 -2.3244 -3.7402 31 1 3.4056 -4.0512 -0.0616 32 1 2.2277 -4.9282 -1.0675 33 1 3.9130 -4.7581 -1.6144 34 1 0.6301 -2.4314 -1.5462 35 1 1.5402 -2.5874 -0.0062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306836822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:16 Heat of formation + Delta-G solvation = -51.520058 kcal Electronic energy + Delta-G solvation = -14916.323607 eV Core-core repulsion = 12528.057942 eV Total energy + Delta-G solvation = -2388.265665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66912 -36.13175 -32.96530 -32.60252 -29.93544 -27.40082 -27.26749 -25.71844 -24.17035 -21.93263 -19.93429 -19.37256 -16.46733 -16.22625 -15.42766 -14.74334 -14.48684 -13.85599 -13.61836 -13.36481 -13.11268 -12.83090 -12.44291 -12.10695 -11.95875 -11.80996 -11.49879 -11.28958 -10.96132 -10.84350 -10.55105 -10.51097 -10.38711 -10.30219 -9.74918 -9.21516 -9.20236 -8.45305 -7.33321 -6.04802 -4.06411 3.31241 3.37169 3.40433 4.03514 4.41299 4.74824 4.89392 5.06043 5.10939 5.30860 5.33135 5.57895 5.62320 5.65656 5.81943 5.85481 5.99811 6.02301 6.09443 6.10631 6.23433 6.28866 6.38293 6.42175 6.52335 6.70943 7.19523 7.29487 7.44464 7.76915 8.03291 8.14163 8.50570 9.00962 9.57910 11.06163 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055833 B = 0.006919 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.378733 B = 4045.786811 C = 4182.472327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.529 5.529 3 C 0.189 3.811 4 C -0.509 4.509 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.051 3.949 13 H 0.045 0.955 14 C 0.062 3.938 15 O -0.379 6.379 16 C 0.100 3.900 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.136 4.136 20 H 0.046 0.954 21 H 0.076 0.924 22 H 0.011 0.989 23 H 0.033 0.967 24 H -0.009 1.009 25 H 0.262 0.738 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.996 -12.529 -4.574 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.064 3.936 4 C -0.547 4.547 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.058 4.058 13 H 0.063 0.937 14 C -0.014 4.014 15 O -0.299 6.299 16 C 0.060 3.940 17 C -0.208 4.208 18 C -0.208 4.208 19 C -0.174 4.174 20 H 0.064 0.936 21 H 0.095 0.905 22 H 0.029 0.971 23 H 0.051 0.949 24 H 0.009 0.991 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.555 -12.624 -4.281 13.421 hybrid contribution -0.663 1.124 0.152 1.314 sum -2.217 -11.500 -4.129 12.418 Atomic orbital electron populations 1.22209 0.88581 0.99626 1.00641 1.62203 1.07110 1.17909 1.38245 1.19799 0.95613 0.81401 0.96761 1.21146 1.34987 0.96956 1.01631 0.91817 1.24992 0.95270 0.97329 0.97009 1.69953 1.38297 1.11509 1.34025 0.86487 0.78863 0.78423 0.83568 1.20585 1.21317 1.19869 1.23196 0.95151 0.93608 0.93879 0.93712 1.23378 0.94322 0.86614 0.97126 1.88390 1.36386 1.29411 1.75690 1.22005 0.86376 0.90671 0.94961 1.22068 1.01035 1.01875 0.95823 1.22075 1.01514 0.96331 1.00927 1.23208 0.97668 0.95010 1.01535 0.93551 0.90505 0.97084 0.94865 0.99126 0.92873 0.90940 0.89847 0.92231 0.91884 0.92254 0.92018 0.91909 0.92317 0.90910 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.20 60.06 0.55 1.29 16 2 N -0.53 -11.39 4.65 -233.64 -1.09 -12.48 16 3 C 0.19 4.90 4.60 -4.98 -0.02 4.88 16 4 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.05 0.95 2.75 -65.46 -0.18 0.77 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.06 1.15 6.18 38.18 0.24 1.39 16 15 O -0.38 -6.56 10.68 -35.23 -0.38 -6.94 16 16 C 0.10 1.42 1.27 -89.90 -0.11 1.30 16 17 C -0.15 -1.82 8.73 37.16 0.32 -1.50 16 18 C -0.15 -1.83 8.75 37.16 0.33 -1.50 16 19 C -0.14 -2.04 4.56 -24.79 -0.11 -2.16 16 20 H 0.05 0.76 7.27 -51.93 -0.38 0.38 16 21 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 23 H 0.03 0.91 6.70 -51.93 -0.35 0.56 16 24 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.08 1.59 7.82 -51.93 -0.41 1.18 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.06 0.63 8.14 -51.94 -0.42 0.21 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.97 7.81 -51.93 -0.41 0.57 16 35 H 0.09 1.32 7.85 -51.93 -0.41 0.91 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -29.55 280.46 -6.93 -36.48 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -6.03 Total: -3.35 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 0.62 Total: -8.58 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.35 Total: -38.40 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.38 Total: -6.94 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.55 -6.93 -36.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306836822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.036 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds