Wall clock time and date at job start Sun Mar 29 2020 22:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 110.99796 * 2 1 4 4 C 1.50700 * 109.47268 * 66.04393 * 3 2 1 5 5 H 1.08000 * 120.00092 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99957 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00327 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99830 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46881 * 90.00242 * 8 6 4 10 10 H 1.48500 * 109.47191 * 209.99817 * 8 6 4 11 11 H 1.48499 * 109.47147 * 330.00347 * 8 6 4 12 12 C 1.46903 * 111.00343 * 236.04537 * 2 1 3 13 13 H 1.08995 * 111.01826 * 61.18420 * 12 2 1 14 14 C 1.54945 * 111.12590 * 185.40841 * 12 2 1 15 15 O 1.43645 * 105.13541 * 154.36345 * 14 12 2 16 16 C 1.43240 * 109.97179 * 335.57081 * 15 14 12 17 17 C 1.52997 * 109.83111 * 121.22531 * 16 15 14 18 18 C 1.53002 * 109.82975 * 242.19786 * 16 15 14 19 19 C 1.54381 * 107.58517 * 1.71070 * 16 15 14 20 20 H 1.08997 * 109.46948 * 183.95385 * 1 2 3 21 21 H 1.08998 * 109.47242 * 303.95231 * 1 2 3 22 22 H 1.08993 * 109.47061 * 63.95809 * 1 2 3 23 23 H 1.09001 * 109.47164 * 186.04236 * 3 2 1 24 24 H 1.09003 * 109.47393 * 306.04582 * 3 2 1 25 25 H 0.96997 * 120.00303 * 179.97438 * 7 6 4 26 26 H 1.09004 * 110.31131 * 35.44606 * 14 12 2 27 27 H 1.09001 * 110.30800 * 273.28040 * 14 12 2 28 28 H 1.09005 * 109.47000 * 61.44901 * 17 16 15 29 29 H 1.08993 * 109.47190 * 181.45242 * 17 16 15 30 30 H 1.09006 * 109.46973 * 301.45820 * 17 16 15 31 31 H 1.09007 * 109.46957 * 58.54378 * 18 16 15 32 32 H 1.08989 * 109.47055 * 178.54724 * 18 16 15 33 33 H 1.09001 * 109.47236 * 298.55072 * 18 16 15 34 34 H 1.09006 * 110.84233 * 139.54764 * 19 16 15 35 35 H 1.09000 * 110.84827 * 263.16409 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0275 3.3492 1.5288 7 7 2.7127 4.0016 0.6154 8 14 1.5836 4.1865 3.1386 9 1 2.6605 3.9495 4.1333 10 1 1.4319 5.6463 2.9119 11 1 0.3057 3.6295 3.6504 12 6 1.9955 -0.7660 -1.1376 13 1 1.6778 -0.3286 -2.0840 14 6 3.5389 -0.8821 -1.0661 15 8 3.8590 -2.0796 -1.7921 16 6 2.7330 -2.9649 -1.7962 17 6 2.3090 -3.2588 -3.2366 18 6 3.0958 -4.2694 -1.0837 19 6 1.5829 -2.2603 -1.0451 20 1 -0.3633 -1.0252 0.0709 21 1 -0.3633 0.5739 0.8524 22 1 -0.3633 0.4511 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5610 1.9274 -0.8309 25 1 2.9872 4.9177 0.7773 26 1 3.8642 -0.9698 -0.0295 27 1 4.0056 -0.0174 -1.5380 28 1 3.1275 -3.7494 -3.7634 29 1 1.4364 -3.9120 -3.2324 30 1 2.0611 -2.3244 -3.7402 31 1 3.4056 -4.0512 -0.0616 32 1 2.2277 -4.9282 -1.0675 33 1 3.9130 -4.7581 -1.6144 34 1 0.6301 -2.4314 -1.5462 35 1 1.5402 -2.5874 -0.0062 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306836822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:16 Heat of formation + Delta-G solvation = -71.457878 kcal Electronic energy + Delta-G solvation = -14917.188176 eV Core-core repulsion = 12528.057942 eV Total energy + Delta-G solvation = -2389.130234 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.01035 -37.80896 -34.71659 -34.13357 -31.47933 -29.27707 -28.20919 -27.28454 -25.77635 -23.78773 -21.31973 -20.77763 -18.56174 -17.65682 -16.84410 -16.64726 -15.89596 -15.37200 -15.21522 -14.81262 -14.40600 -14.31088 -13.93943 -13.68275 -13.13655 -13.10965 -12.90047 -12.84020 -12.60794 -12.49331 -12.22553 -12.13234 -11.89383 -11.68975 -11.43540 -11.18533 -10.62094 -10.52055 -9.11823 -8.21715 -6.32001 1.41335 1.42946 1.53841 2.39134 2.72820 3.11080 3.28998 3.52815 3.84695 3.97157 4.14309 4.22394 4.26337 4.49594 4.69767 4.70609 4.74608 4.79520 4.83134 4.93236 4.96622 5.00792 5.02334 5.10362 5.18062 5.27584 5.31010 5.43495 5.63889 6.02221 6.11834 6.25683 6.58021 6.83959 7.37834 8.89664 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055833 B = 0.006919 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.378733 B = 4045.786811 C = 4182.472327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.534 5.534 3 C 0.204 3.796 4 C -0.525 4.525 5 H 0.065 0.935 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.262 1.262 12 C 0.047 3.953 13 H 0.038 0.962 14 C 0.068 3.932 15 O -0.391 6.391 16 C 0.088 3.912 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.124 4.124 20 H 0.084 0.916 21 H 0.060 0.940 22 H 0.010 0.990 23 H 0.010 0.990 24 H -0.041 1.041 25 H 0.265 0.735 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -14.194 -4.057 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.260 5.260 3 C 0.078 3.922 4 C -0.563 4.563 5 H 0.084 0.916 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.187 1.187 12 C -0.063 4.063 13 H 0.056 0.944 14 C -0.009 4.009 15 O -0.311 6.311 16 C 0.050 3.950 17 C -0.205 4.205 18 C -0.205 4.205 19 C -0.162 4.162 20 H 0.102 0.898 21 H 0.079 0.921 22 H 0.028 0.972 23 H 0.028 0.972 24 H -0.023 1.023 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.779 -14.320 -3.770 15.066 hybrid contribution -0.273 1.580 -0.072 1.605 sum -3.052 -12.740 -3.841 13.652 Atomic orbital electron populations 1.22236 0.86988 1.01713 0.99867 1.62120 1.08581 1.15272 1.39979 1.19446 0.94103 0.83621 0.95029 1.21471 1.34996 0.97531 1.02287 0.91648 1.25932 0.94976 0.98065 1.00732 1.70086 1.39342 1.11948 1.36216 0.85361 0.79020 0.77208 0.78897 1.19901 1.20842 1.18657 1.23257 0.95008 0.95593 0.92400 0.94374 1.23142 0.94541 0.86979 0.96233 1.88381 1.38105 1.29202 1.75428 1.22371 0.85126 0.90843 0.96702 1.22072 1.02404 1.02004 0.94014 1.22067 1.02969 0.95450 0.99987 1.23189 0.99142 0.91710 1.02121 0.89762 0.92119 0.97158 0.97195 1.02296 0.92667 0.92400 0.91525 0.91644 0.89056 0.93343 0.93052 0.89180 0.91708 0.88434 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.20 127.69 1.17 2.68 16 2 N -0.53 -23.10 4.65 -893.09 -4.16 -27.26 16 3 C 0.20 10.97 4.60 85.56 0.39 11.36 16 4 C -0.52 -29.79 8.46 25.60 0.22 -29.57 16 5 H 0.07 3.61 7.12 -2.91 -0.02 3.59 16 6 C 0.00 0.05 5.46 84.66 0.46 0.51 16 7 N -0.94 -56.72 13.29 21.45 0.28 -56.44 16 8 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 12 C 0.05 1.72 2.75 46.37 0.13 1.85 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 14 C 0.07 2.60 6.18 72.65 0.45 3.05 16 15 O -0.39 -13.39 10.68 -148.98 -1.59 -14.98 16 16 C 0.09 2.32 1.27 -10.33 -0.01 2.31 16 17 C -0.15 -3.15 8.73 71.98 0.63 -2.52 16 18 C -0.15 -3.15 8.75 71.98 0.63 -2.52 16 19 C -0.12 -3.42 4.56 31.85 0.15 -3.27 16 20 H 0.08 2.51 7.27 -2.39 -0.02 2.50 16 21 H 0.06 2.47 6.76 -2.39 -0.02 2.45 16 22 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.01 0.57 6.70 -2.39 -0.02 0.56 16 24 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 25 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.07 2.70 7.82 -2.39 -0.02 2.68 16 28 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 2.22 7.81 -2.38 -0.02 2.20 16 35 H 0.09 2.40 7.85 -2.39 -0.02 2.38 16 Total: -1.00 -64.23 280.46 1.81 -62.42 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.03 Total: 6.08 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.21 Total: -16.13 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -3.87 Total: -83.70 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.59 Total: -14.98 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -64.23 1.81 -62.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306836822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.037 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds