Wall clock time and date at job start Sun Mar 29 2020 22:32:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.46626 * 2 1
4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3
5 5 H 1.09003 * 109.50989 * 59.90678 * 4 2 1
6 6 C 1.53097 * 109.50757 * 179.97438 * 4 2 1
7 7 N 1.47009 * 109.26035 * 176.78100 * 6 4 2
8 8 C 1.46896 * 111.00227 * 177.61024 * 7 6 4
9 9 C 1.50699 * 109.47358 * 190.00181 * 8 7 6
10 10 H 1.08002 * 119.99698 * 359.97438 * 9 8 7
11 11 C 1.37880 * 120.00231 * 179.97438 * 9 8 7
12 12 N 1.31506 * 119.99928 * 0.02562 * 11 9 8
13 13 Si 1.86799 * 119.99945 * 179.97438 * 11 9 8
14 14 H 1.48505 * 109.46958 * 60.00496 * 13 11 9
15 15 H 1.48499 * 109.47163 * 179.97438 * 13 11 9
16 16 H 1.48502 * 109.47654 * 300.00464 * 13 11 9
17 17 C 1.47018 * 110.75424 * 301.38595 * 7 6 4
18 18 C 1.53103 * 109.25592 * 58.61657 * 17 7 6
19 19 O 1.43017 * 109.50444 * 299.78199 * 4 2 1
20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3
21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3
22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3
23 23 H 1.08993 * 109.46955 * 120.00472 * 2 1 3
24 24 H 1.08993 * 109.47839 * 299.99931 * 3 2 1
25 25 H 1.09000 * 109.47160 * 60.00369 * 3 2 1
26 26 H 1.09002 * 109.46719 * 180.02562 * 3 2 1
27 27 H 1.08999 * 109.51013 * 296.71803 * 6 4 2
28 28 H 1.09008 * 109.50394 * 56.84791 * 6 4 2
29 29 H 1.09004 * 109.47220 * 310.00153 * 8 7 6
30 30 H 1.08999 * 109.47344 * 69.99912 * 8 7 6
31 31 H 0.96998 * 120.00542 * 179.97438 * 12 11 9
32 32 H 1.09004 * 109.50925 * 178.54575 * 17 7 6
33 33 H 1.08997 * 109.50904 * 298.68504 * 17 7 6
34 34 H 1.09004 * 109.50971 * 63.08562 * 18 17 7
35 35 H 1.08996 * 109.50382 * 183.21779 * 18 17 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0401 -0.7211 -1.2493
5 1 1.6757 -0.2087 -2.1397
6 6 3.5710 -0.7211 -1.2504
7 7 4.0551 -1.4814 -2.4118
8 6 5.5222 -1.4582 -2.4819
9 6 5.9712 -2.0295 -3.8021
10 1 5.2397 -2.3757 -4.5174
11 6 7.3157 -2.1103 -4.0969
12 7 8.2063 -1.6893 -3.2258
13 14 7.8721 -2.8192 -5.7332
14 1 7.3101 -2.0063 -6.8416
15 1 9.3552 -2.7945 -5.8046
16 1 7.3934 -4.2197 -5.8544
17 6 3.5511 -2.8621 -2.3774
18 6 2.0203 -2.8407 -2.3650
19 8 1.5679 -2.0711 -1.2475
20 1 -0.3633 0.5139 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 1.8933 -0.5139 0.8899
24 1 1.6767 1.9564 -0.8899
25 1 1.6766 1.9563 0.8900
26 1 3.1300 1.4425 -0.0005
27 1 3.9350 0.3047 -1.3096
28 1 3.9357 -1.1850 -0.3339
29 1 5.8740 -0.4304 -2.3923
30 1 5.9344 -2.0554 -1.6686
31 1 9.1522 -1.7464 -3.4329
32 1 3.9004 -3.3992 -3.2592
33 1 3.9154 -3.3603 -1.4789
34 1 1.6551 -2.3906 -3.2882
35 1 1.6428 -3.8597 -2.2819
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000306929651.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:32:23
Heat of formation + Delta-G solvation = -58.016170 kcal
Electronic energy + Delta-G solvation = -14885.930253 eV
Core-core repulsion = 12497.382896 eV
Total energy + Delta-G solvation = -2388.547358 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 213.147 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.26363 -35.56883 -34.82452 -32.45859 -29.73801 -28.23279 -26.95792 -25.16183
-23.44693 -22.00753 -19.92353 -19.72812 -16.40134 -16.10248 -15.76537 -14.55464
-14.46607 -14.31160 -14.05242 -13.54521 -13.20137 -12.84251 -12.56863 -12.12625
-11.97014 -11.42389 -11.33944 -10.98743 -10.90440 -10.77494 -10.71970 -10.54111
-10.45839 -10.12389 -9.77297 -9.35760 -8.91154 -8.45355 -7.30586 -6.04695
-4.06651 3.32129 3.36192 3.38984 4.06762 4.39502 4.75357 5.03215
5.13369 5.29208 5.31037 5.53238 5.58151 5.69731 5.71036 5.74938
5.82181 5.92446 5.99433 6.02336 6.07407 6.21910 6.31219 6.35760
6.49264 6.58118 6.61495 7.22367 7.30746 7.59608 7.75886 8.03860
8.14261 8.50403 9.00220 9.57610 11.06235
Molecular weight = 213.15amu
Principal moments of inertia in cm(-1)
A = 0.051149 B = 0.007121 C = 0.006519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 547.294179 B = 3930.820866 C = 4294.196856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.088 4.088
3 C -0.148 4.148
4 C 0.100 3.900
5 H 0.061 0.939
6 C 0.024 3.976
7 N -0.536 5.536
8 C 0.193 3.807
9 C -0.510 4.510
10 H 0.063 0.937
11 C 0.056 3.944
12 N -0.899 5.899
13 Si 0.899 3.101
14 H -0.276 1.276
15 H -0.287 1.287
16 H -0.277 1.277
17 C 0.028 3.972
18 C 0.064 3.936
19 O -0.389 6.389
20 H 0.051 0.949
21 H 0.061 0.939
22 H 0.050 0.950
23 H 0.073 0.927
24 H 0.056 0.944
25 H 0.056 0.944
26 H 0.061 0.939
27 H 0.078 0.922
28 H 0.029 0.971
29 H 0.031 0.969
30 H -0.009 1.009
31 H 0.262 0.738
32 H 0.091 0.909
33 H 0.028 0.972
34 H 0.053 0.947
35 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.294 2.177 4.822 13.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.107 4.107
3 C -0.205 4.205
4 C 0.042 3.958
5 H 0.079 0.921
6 C -0.105 4.105
7 N -0.261 5.261
8 C 0.068 3.932
9 C -0.548 4.548
10 H 0.081 0.919
11 C -0.146 4.146
12 N -0.538 5.538
13 Si 0.727 3.273
14 H -0.201 1.201
15 H -0.213 1.213
16 H -0.203 1.203
17 C -0.101 4.101
18 C -0.013 4.013
19 O -0.308 6.308
20 H 0.070 0.930
21 H 0.080 0.920
22 H 0.069 0.931
23 H 0.092 0.908
24 H 0.076 0.924
25 H 0.075 0.925
26 H 0.080 0.920
27 H 0.097 0.903
28 H 0.047 0.953
29 H 0.049 0.951
30 H 0.009 0.991
31 H 0.072 0.928
32 H 0.109 0.891
33 H 0.047 0.953
34 H 0.071 0.929
35 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -12.381 2.351 4.563 13.403
hybrid contribution 1.075 -0.686 -0.347 1.322
sum -11.306 1.665 4.216 12.180
Atomic orbital electron populations
1.21744 0.94867 1.02154 1.01013 1.21080 0.96226 0.95755 0.97642
1.21860 1.01726 0.95127 1.01773 1.22174 0.93095 0.83043 0.97503
0.92074 1.22758 0.94739 0.99763 0.93242 1.62359 1.14404 1.11458
1.37890 1.19729 0.79573 0.97170 0.96682 1.21107 0.91500 1.40651
1.01563 0.91932 1.24994 0.96650 0.95698 0.97236 1.69945 1.01362
1.47322 1.35176 0.86541 0.77328 0.79549 0.83871 1.20138 1.21316
1.20253 1.22616 0.93979 0.91736 1.01739 1.22699 0.94349 0.95208
0.89009 1.87858 1.73012 1.23102 1.46805 0.92986 0.92001 0.93139
0.90808 0.92441 0.92477 0.91950 0.90334 0.95283 0.95136 0.99085
0.92818 0.89061 0.95343 0.92889 0.89381
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.63 9.05 37.16 0.34 -1.29 16
2 C -0.09 -1.17 2.72 -90.62 -0.25 -1.41 16
3 C -0.15 -1.72 8.84 37.16 0.33 -1.39 16
4 C 0.10 1.63 2.38 -26.68 -0.06 1.56 16
5 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
6 C 0.02 0.45 4.47 -3.71 -0.02 0.44 16
7 N -0.54 -12.00 4.72 -235.75 -1.11 -13.11 16
8 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16
9 C -0.51 -14.43 8.49 -34.44 -0.29 -14.73 16
10 H 0.06 1.74 7.14 -52.49 -0.37 1.37 16
11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16
12 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16
13 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16
14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
17 C 0.03 0.57 5.46 -3.71 -0.02 0.54 16
18 C 0.06 1.07 7.01 37.21 0.26 1.33 16
19 O -0.39 -6.68 9.81 -35.23 -0.35 -7.03 16
20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
21 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16
22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16
24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
26 H 0.06 0.77 6.51 -51.93 -0.34 0.43 16
27 H 0.08 1.45 6.56 -51.93 -0.34 1.11 16
28 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16
29 H 0.03 0.86 8.04 -51.93 -0.42 0.44 16
30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16
31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
32 H 0.09 1.92 6.83 -51.93 -0.35 1.57 16
33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16
35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16
LS Contribution 277.87 15.07 4.19 4.19
Total: -1.00 -30.07 277.87 -7.40 -37.46
By element:
Atomic # 1 Polarization: 2.33 SS G_CDS: -6.01 Total: -3.68 kcal
Atomic # 6 Polarization: -8.49 SS G_CDS: 0.17 Total: -8.33 kcal
Atomic # 7 Polarization: -38.87 SS G_CDS: -0.38 Total: -39.25 kcal
Atomic # 8 Polarization: -6.68 SS G_CDS: -0.35 Total: -7.03 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 4.19 Total: 4.19 kcal
Total: -30.07 -7.40 -37.46 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306929651.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.553 kcal
(2) G-P(sol) polarization free energy of solvation -30.066 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.016 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds