Wall clock time and date at job start Sun Mar 29 2020 22:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 H 1.09003 * 109.50989 * 59.90678 * 4 2 1 6 6 C 1.53097 * 109.50757 * 179.97438 * 4 2 1 7 7 N 1.47009 * 109.26035 * 176.78100 * 6 4 2 8 8 C 1.46896 * 111.00227 * 177.61024 * 7 6 4 9 9 C 1.50699 * 109.47358 * 190.00181 * 8 7 6 10 10 H 1.08002 * 119.99698 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00231 * 179.97438 * 9 8 7 12 12 N 1.31506 * 119.99928 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99945 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46958 * 60.00496 * 13 11 9 15 15 H 1.48499 * 109.47163 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47654 * 300.00464 * 13 11 9 17 17 C 1.47018 * 110.75424 * 301.38595 * 7 6 4 18 18 C 1.53103 * 109.25592 * 58.61657 * 17 7 6 19 19 O 1.43017 * 109.50444 * 299.78199 * 4 2 1 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 25 25 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 26 26 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.51013 * 296.71803 * 6 4 2 28 28 H 1.09008 * 109.50394 * 56.84791 * 6 4 2 29 29 H 1.09004 * 109.47220 * 310.00153 * 8 7 6 30 30 H 1.08999 * 109.47344 * 69.99912 * 8 7 6 31 31 H 0.96998 * 120.00542 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.50925 * 178.54575 * 17 7 6 33 33 H 1.08997 * 109.50904 * 298.68504 * 17 7 6 34 34 H 1.09004 * 109.50971 * 63.08562 * 18 17 7 35 35 H 1.08996 * 109.50382 * 183.21779 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6757 -0.2087 -2.1397 6 6 3.5710 -0.7211 -1.2504 7 7 4.0551 -1.4814 -2.4118 8 6 5.5222 -1.4582 -2.4819 9 6 5.9712 -2.0295 -3.8021 10 1 5.2397 -2.3757 -4.5174 11 6 7.3157 -2.1103 -4.0969 12 7 8.2063 -1.6893 -3.2258 13 14 7.8721 -2.8192 -5.7332 14 1 7.3101 -2.0063 -6.8416 15 1 9.3552 -2.7945 -5.8046 16 1 7.3934 -4.2197 -5.8544 17 6 3.5511 -2.8621 -2.3774 18 6 2.0203 -2.8407 -2.3650 19 8 1.5679 -2.0711 -1.2475 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.6767 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.9350 0.3047 -1.3096 28 1 3.9357 -1.1850 -0.3339 29 1 5.8740 -0.4304 -2.3923 30 1 5.9344 -2.0554 -1.6686 31 1 9.1522 -1.7464 -3.4329 32 1 3.9004 -3.3992 -3.2592 33 1 3.9154 -3.3603 -1.4789 34 1 1.6551 -2.3906 -3.2882 35 1 1.6428 -3.8597 -2.2819 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306929651.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:23 Heat of formation + Delta-G solvation = -58.016170 kcal Electronic energy + Delta-G solvation = -14885.930253 eV Core-core repulsion = 12497.382896 eV Total energy + Delta-G solvation = -2388.547358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.26363 -35.56883 -34.82452 -32.45859 -29.73801 -28.23279 -26.95792 -25.16183 -23.44693 -22.00753 -19.92353 -19.72812 -16.40134 -16.10248 -15.76537 -14.55464 -14.46607 -14.31160 -14.05242 -13.54521 -13.20137 -12.84251 -12.56863 -12.12625 -11.97014 -11.42389 -11.33944 -10.98743 -10.90440 -10.77494 -10.71970 -10.54111 -10.45839 -10.12389 -9.77297 -9.35760 -8.91154 -8.45355 -7.30586 -6.04695 -4.06651 3.32129 3.36192 3.38984 4.06762 4.39502 4.75357 5.03215 5.13369 5.29208 5.31037 5.53238 5.58151 5.69731 5.71036 5.74938 5.82181 5.92446 5.99433 6.02336 6.07407 6.21910 6.31219 6.35760 6.49264 6.58118 6.61495 7.22367 7.30746 7.59608 7.75886 8.03860 8.14261 8.50403 9.00220 9.57610 11.06235 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051149 B = 0.007121 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.294179 B = 3930.820866 C = 4294.196856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.100 3.900 5 H 0.061 0.939 6 C 0.024 3.976 7 N -0.536 5.536 8 C 0.193 3.807 9 C -0.510 4.510 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.028 3.972 18 C 0.064 3.936 19 O -0.389 6.389 20 H 0.051 0.949 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.078 0.922 28 H 0.029 0.971 29 H 0.031 0.969 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.091 0.909 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 2.177 4.822 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.205 4.205 4 C 0.042 3.958 5 H 0.079 0.921 6 C -0.105 4.105 7 N -0.261 5.261 8 C 0.068 3.932 9 C -0.548 4.548 10 H 0.081 0.919 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.101 4.101 18 C -0.013 4.013 19 O -0.308 6.308 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.381 2.351 4.563 13.403 hybrid contribution 1.075 -0.686 -0.347 1.322 sum -11.306 1.665 4.216 12.180 Atomic orbital electron populations 1.21744 0.94867 1.02154 1.01013 1.21080 0.96226 0.95755 0.97642 1.21860 1.01726 0.95127 1.01773 1.22174 0.93095 0.83043 0.97503 0.92074 1.22758 0.94739 0.99763 0.93242 1.62359 1.14404 1.11458 1.37890 1.19729 0.79573 0.97170 0.96682 1.21107 0.91500 1.40651 1.01563 0.91932 1.24994 0.96650 0.95698 0.97236 1.69945 1.01362 1.47322 1.35176 0.86541 0.77328 0.79549 0.83871 1.20138 1.21316 1.20253 1.22616 0.93979 0.91736 1.01739 1.22699 0.94349 0.95208 0.89009 1.87858 1.73012 1.23102 1.46805 0.92986 0.92001 0.93139 0.90808 0.92441 0.92477 0.91950 0.90334 0.95283 0.95136 0.99085 0.92818 0.89061 0.95343 0.92889 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.05 37.16 0.34 -1.29 16 2 C -0.09 -1.17 2.72 -90.62 -0.25 -1.41 16 3 C -0.15 -1.72 8.84 37.16 0.33 -1.39 16 4 C 0.10 1.63 2.38 -26.68 -0.06 1.56 16 5 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 6 C 0.02 0.45 4.47 -3.71 -0.02 0.44 16 7 N -0.54 -12.00 4.72 -235.75 -1.11 -13.11 16 8 C 0.19 5.15 4.72 -4.98 -0.02 5.13 16 9 C -0.51 -14.43 8.49 -34.44 -0.29 -14.73 16 10 H 0.06 1.74 7.14 -52.49 -0.37 1.37 16 11 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 13 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.03 0.57 5.46 -3.71 -0.02 0.54 16 18 C 0.06 1.07 7.01 37.21 0.26 1.33 16 19 O -0.39 -6.68 9.81 -35.23 -0.35 -7.03 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.77 7.69 -51.93 -0.40 0.37 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.77 6.51 -51.93 -0.34 0.43 16 27 H 0.08 1.45 6.56 -51.93 -0.34 1.11 16 28 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.03 0.86 8.04 -51.93 -0.42 0.44 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.09 1.92 6.83 -51.93 -0.35 1.57 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 277.87 15.07 4.19 4.19 Total: -1.00 -30.07 277.87 -7.40 -37.46 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.01 Total: -3.68 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 0.17 Total: -8.33 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.38 Total: -39.25 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.35 Total: -7.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.07 -7.40 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306929651.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.553 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds