Wall clock time and date at job start Sun Mar 29 2020 22:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 H 1.09003 * 109.50989 * 59.90678 * 4 2 1 6 6 C 1.53097 * 109.50757 * 179.97438 * 4 2 1 7 7 N 1.47009 * 109.26035 * 176.78100 * 6 4 2 8 8 C 1.46896 * 111.00227 * 177.61024 * 7 6 4 9 9 C 1.50699 * 109.47358 * 190.00181 * 8 7 6 10 10 H 1.08002 * 119.99698 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00231 * 179.97438 * 9 8 7 12 12 N 1.31506 * 119.99928 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99945 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46958 * 60.00496 * 13 11 9 15 15 H 1.48499 * 109.47163 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47654 * 300.00464 * 13 11 9 17 17 C 1.47018 * 110.75424 * 301.38595 * 7 6 4 18 18 C 1.53103 * 109.25592 * 58.61657 * 17 7 6 19 19 O 1.43017 * 109.50444 * 299.78199 * 4 2 1 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 24 24 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 25 25 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 26 26 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.51013 * 296.71803 * 6 4 2 28 28 H 1.09008 * 109.50394 * 56.84791 * 6 4 2 29 29 H 1.09004 * 109.47220 * 310.00153 * 8 7 6 30 30 H 1.08999 * 109.47344 * 69.99912 * 8 7 6 31 31 H 0.96998 * 120.00542 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.50925 * 178.54575 * 17 7 6 33 33 H 1.08997 * 109.50904 * 298.68504 * 17 7 6 34 34 H 1.09004 * 109.50971 * 63.08562 * 18 17 7 35 35 H 1.08996 * 109.50382 * 183.21779 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6757 -0.2087 -2.1397 6 6 3.5710 -0.7211 -1.2504 7 7 4.0551 -1.4814 -2.4118 8 6 5.5222 -1.4582 -2.4819 9 6 5.9712 -2.0295 -3.8021 10 1 5.2397 -2.3757 -4.5174 11 6 7.3157 -2.1103 -4.0969 12 7 8.2063 -1.6893 -3.2258 13 14 7.8721 -2.8192 -5.7332 14 1 7.3101 -2.0063 -6.8416 15 1 9.3552 -2.7945 -5.8046 16 1 7.3934 -4.2197 -5.8544 17 6 3.5511 -2.8621 -2.3774 18 6 2.0203 -2.8407 -2.3650 19 8 1.5679 -2.0711 -1.2475 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 0.8899 24 1 1.6767 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.9350 0.3047 -1.3096 28 1 3.9357 -1.1850 -0.3339 29 1 5.8740 -0.4304 -2.3923 30 1 5.9344 -2.0554 -1.6686 31 1 9.1522 -1.7464 -3.4329 32 1 3.9004 -3.3992 -3.2592 33 1 3.9154 -3.3603 -1.4789 34 1 1.6551 -2.3906 -3.2882 35 1 1.6428 -3.8597 -2.2819 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306929651.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:22 Heat of formation + Delta-G solvation = -78.344014 kcal Electronic energy + Delta-G solvation = -14886.811735 eV Core-core repulsion = 12497.382896 eV Total energy + Delta-G solvation = -2389.428839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72032 -37.13294 -36.15173 -34.58137 -31.14065 -30.09767 -28.03061 -26.89550 -24.90973 -23.87888 -21.39012 -21.06097 -18.56231 -17.48597 -17.27760 -16.43876 -16.06760 -15.68240 -15.63603 -14.91541 -14.64869 -14.34487 -14.07437 -13.52630 -13.31507 -12.95212 -12.78938 -12.76026 -12.61454 -12.38054 -12.09582 -12.00149 -11.85453 -11.65090 -11.40085 -11.15062 -10.65098 -10.46183 -9.17455 -8.24205 -6.35646 1.40090 1.43720 1.51744 2.37838 2.77297 3.06982 3.14320 3.79538 3.97620 4.11367 4.13131 4.23128 4.32574 4.42921 4.47513 4.62791 4.70864 4.84553 4.88371 4.91196 4.96363 5.03631 5.10604 5.12524 5.15922 5.25921 5.43358 5.49540 5.58959 5.96790 6.17442 6.24127 6.50259 6.79016 7.34406 8.87195 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051149 B = 0.007121 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.294179 B = 3930.820866 C = 4294.196856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.145 4.145 4 C 0.105 3.895 5 H 0.063 0.937 6 C 0.023 3.977 7 N -0.543 5.543 8 C 0.208 3.792 9 C -0.528 4.528 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.974 3.026 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.027 3.973 18 C 0.072 3.928 19 O -0.391 6.391 20 H 0.057 0.943 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.017 0.983 29 H 0.005 0.995 30 H -0.042 1.042 31 H 0.266 0.734 32 H 0.080 0.920 33 H 0.015 0.985 34 H 0.061 0.939 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.870 2.080 4.132 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C -0.203 4.203 4 C 0.047 3.953 5 H 0.081 0.919 6 C -0.105 4.105 7 N -0.268 5.268 8 C 0.082 3.918 9 C -0.566 4.566 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.798 3.202 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.191 1.191 17 C -0.102 4.102 18 C -0.004 4.004 19 O -0.310 6.310 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.035 0.965 29 H 0.023 0.977 30 H -0.024 1.024 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.987 2.255 3.882 14.689 hybrid contribution 1.567 -0.635 -0.077 1.693 sum -12.419 1.620 3.805 13.090 Atomic orbital electron populations 1.21699 0.93084 1.02042 1.02378 1.21107 0.97630 0.96099 0.95601 1.21855 1.00859 0.94339 1.03202 1.22253 0.90559 0.83123 0.99355 0.91889 1.22876 0.97137 0.99121 0.91367 1.62301 1.11564 1.13188 1.39705 1.19389 0.82401 0.94744 0.95267 1.21410 0.92079 1.40998 1.02106 0.91640 1.25971 0.96633 0.95785 1.01295 1.70081 1.01801 1.48274 1.37404 0.85368 0.76913 0.79137 0.78797 1.19166 1.20776 1.19052 1.22686 0.96810 0.90157 1.00525 1.22741 0.91212 0.97134 0.89357 1.87874 1.72655 1.23463 1.47044 0.92381 0.92838 0.91049 0.91363 0.91863 0.90228 0.93327 0.90190 0.96507 0.97704 1.02400 0.92555 0.90184 0.96688 0.92075 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.05 71.98 0.65 -2.10 16 2 C -0.09 -2.11 2.72 -10.79 -0.03 -2.14 16 3 C -0.15 -3.13 8.84 71.98 0.64 -2.49 16 4 C 0.11 3.30 2.38 30.63 0.07 3.37 16 5 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 6 C 0.02 0.91 4.47 86.31 0.39 1.29 16 7 N -0.54 -24.80 4.72 -899.77 -4.24 -29.04 16 8 C 0.21 11.56 4.72 85.56 0.40 11.97 16 9 C -0.53 -30.44 8.49 25.60 0.22 -30.22 16 10 H 0.07 3.66 7.14 -2.91 -0.02 3.64 16 11 C 0.00 0.08 5.46 84.66 0.46 0.54 16 12 N -0.94 -57.08 13.29 21.45 0.28 -56.79 16 13 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 C 0.03 1.08 5.46 86.32 0.47 1.56 16 18 C 0.07 2.28 7.01 72.02 0.50 2.79 16 19 O -0.39 -12.79 9.81 -148.98 -1.46 -14.25 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.19 7.69 -2.39 -0.02 1.17 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.05 1.17 6.51 -2.39 -0.02 1.15 16 27 H 0.08 3.03 6.56 -2.39 -0.02 3.01 16 28 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.00 0.29 8.04 -2.39 -0.02 0.27 16 30 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 31 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.08 3.39 6.83 -2.38 -0.02 3.38 16 33 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -65.02 277.87 1.41 -63.61 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.03 Total: 5.55 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.78 Total: -15.44 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -3.96 Total: -85.83 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -1.46 Total: -14.25 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.02 1.41 -63.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306929651.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.736 kcal (2) G-P(sol) polarization free energy of solvation -65.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds