Wall clock time and date at job start Sun Mar 29 2020 21:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46500 * 109.47476 * 239.99811 * 2 1 3 13 13 C 1.34774 * 119.99709 * 84.99803 * 12 2 1 14 14 O 1.21283 * 120.00230 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99634 * 180.02562 * 13 12 2 16 16 C 1.53000 * 112.99728 * 48.17718 * 15 13 12 17 17 C 1.54034 * 113.81579 * 276.18782 * 15 13 12 18 18 O 1.44182 * 85.51786 * 223.19613 * 17 15 13 19 19 C 1.44179 * 93.33846 * 24.19422 * 18 17 15 20 20 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 22 22 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 23 23 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 24 24 H 0.96997 * 119.99804 * 265.00302 * 12 2 1 25 25 H 1.09004 * 109.47086 * 69.66643 * 16 15 13 26 26 H 1.09000 * 109.46916 * 189.66089 * 16 15 13 27 27 H 1.08999 * 109.47081 * 309.66500 * 16 15 13 28 28 H 1.08999 * 113.86829 * 337.34384 * 17 15 13 29 29 H 1.08997 * 113.86104 * 109.05294 * 17 15 13 30 30 H 1.09001 * 113.86531 * 221.66054 * 19 18 17 31 31 H 1.09004 * 113.98048 * 89.96547 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 6 1.9392 -2.0605 -3.8402 17 6 4.1846 -0.8131 -3.6745 18 8 4.0120 -0.4665 -5.0633 19 6 2.7406 0.1732 -4.8329 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.9031 -0.5278 4.4376 24 1 2.2491 -1.6318 -1.1525 25 1 0.9086 -1.8716 -4.1409 26 1 2.4552 -2.6027 -4.6326 27 1 1.9480 -2.6559 -2.9272 28 1 4.7018 -0.0515 -3.0908 29 1 4.5808 -1.8161 -3.5163 30 1 1.9916 -0.0476 -5.5934 31 1 2.8146 1.2361 -4.6030 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306967767.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:10 Heat of formation + Delta-G solvation = -74.688268 kcal Electronic energy + Delta-G solvation = -14653.230961 eV Core-core repulsion = 12128.127553 eV Total energy + Delta-G solvation = -2525.103409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.15874 -39.83329 -36.84513 -34.53063 -33.34661 -31.25193 -27.60951 -27.31555 -27.24190 -24.32474 -21.91538 -20.49699 -19.00999 -18.15290 -17.56046 -17.07566 -16.78584 -16.44654 -15.65382 -15.32103 -14.87682 -14.52215 -14.15133 -13.93613 -13.57119 -13.40927 -13.17314 -12.98588 -12.79657 -12.36535 -12.16518 -11.83009 -11.61883 -11.29257 -10.89370 -10.87044 -10.48592 -9.92784 -8.39459 -6.45451 1.26157 1.34798 1.43733 1.59018 2.24785 2.35933 2.59919 2.96542 3.10837 3.75157 3.88747 4.07681 4.34579 4.42939 4.52394 4.54341 4.68251 4.77293 4.78972 4.82164 4.98128 4.98560 5.06022 5.23997 5.30386 5.40634 5.60543 6.10952 6.56111 6.80995 7.16827 7.37422 8.75633 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052575 B = 0.008107 C = 0.007764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.448540 B = 3452.810202 C = 3605.434019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.239 3.761 3 H 0.021 0.979 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.030 3.970 7 N -0.932 5.932 8 Si 0.938 3.062 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.264 1.264 12 N -0.693 5.693 13 C 0.511 3.489 14 O -0.592 6.592 15 C -0.152 4.152 16 C -0.122 4.122 17 C 0.057 3.943 18 O -0.388 6.388 19 C 0.061 3.939 20 H 0.067 0.933 21 H 0.040 0.960 22 H 0.045 0.955 23 H 0.270 0.730 24 H 0.408 0.592 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.850 -2.384 -14.052 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.134 3.866 3 H 0.039 0.961 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.170 4.170 7 N -0.571 5.571 8 Si 0.765 3.235 9 H -0.185 1.185 10 H -0.220 1.220 11 H -0.189 1.189 12 N -0.342 5.342 13 C 0.298 3.702 14 O -0.474 6.474 15 C -0.155 4.155 16 C -0.180 4.180 17 C -0.020 4.020 18 O -0.307 6.307 19 C -0.016 4.016 20 H 0.086 0.914 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.244 0.756 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.896 -1.624 -14.101 14.222 hybrid contribution -0.359 0.430 0.977 1.126 sum -1.256 -1.194 -13.124 13.238 Atomic orbital electron populations 1.22334 0.97698 1.01811 0.99429 1.18797 0.91331 0.93155 0.83312 0.96103 1.21246 1.32406 1.13628 0.89836 0.92320 1.25544 0.96820 0.99265 0.95391 1.69971 1.46623 1.41863 0.98662 0.86021 0.79861 0.80419 0.77167 1.18494 1.21969 1.18874 1.46062 1.64671 1.14385 1.09084 1.21007 0.77044 0.86870 0.85278 1.90629 1.52926 1.17941 1.85886 1.24144 0.98633 0.99707 0.93052 1.21618 1.00632 0.91829 1.03871 1.24087 0.92230 1.03340 0.82332 1.89641 1.39535 1.76217 1.25316 1.24028 0.85992 0.96908 0.94673 0.91427 0.94129 0.93577 0.92028 0.75628 0.90802 0.88953 0.90661 0.90757 0.85476 0.86300 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.59 8.96 71.98 0.65 -5.94 16 2 C 0.24 11.14 2.15 44.25 0.10 11.23 16 3 H 0.02 1.10 6.63 -2.39 -0.02 1.09 16 4 C -0.53 -28.52 9.31 25.60 0.24 -28.28 16 5 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 6 C 0.03 1.66 5.45 84.65 0.46 2.12 16 7 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 8 Si 0.94 44.28 24.37 68.60 1.67 45.95 16 9 H -0.26 -11.47 6.87 99.48 0.68 -10.79 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 H -0.26 -12.44 6.53 99.48 0.65 -11.79 16 12 N -0.69 -26.19 4.96 -446.09 -2.21 -28.40 16 13 C 0.51 18.29 6.92 87.66 0.61 18.90 16 14 O -0.59 -25.97 15.56 -3.04 -0.05 -26.01 16 15 C -0.15 -3.89 1.31 -52.23 -0.07 -3.96 16 16 C -0.12 -2.31 9.05 71.98 0.65 -1.66 16 17 C 0.06 1.36 8.32 72.27 0.60 1.96 16 18 O -0.39 -10.09 12.38 -148.98 -1.85 -11.94 16 19 C 0.06 1.52 8.15 72.27 0.59 2.11 16 20 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 21 H 0.04 1.77 3.27 -2.39 -0.01 1.77 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 24 H 0.41 13.32 7.42 -92.71 -0.69 12.63 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 26 H 0.09 1.41 8.06 -2.39 -0.02 1.39 16 27 H 0.07 1.35 7.03 -2.39 -0.02 1.33 16 28 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 29 H 0.13 2.30 8.10 -2.39 -0.02 2.28 16 30 H 0.12 2.32 8.10 -2.39 -0.02 2.30 16 31 H 0.08 2.24 7.40 -2.38 -0.02 2.22 16 Total: -1.00 -66.14 256.18 2.05 -64.08 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.36 Total: 14.76 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 3.82 Total: -3.52 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.91 Total: -83.32 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.89 Total: -37.95 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.67 Total: 45.95 kcal Total: -66.14 2.05 -64.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306967767.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.604 kcal (2) G-P(sol) polarization free energy of solvation -66.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds