Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.90078 * 2 1 4 4 C 1.54388 * 109.82990 * 120.92972 * 2 1 3 5 5 C 1.55308 * 102.43740 * 140.97207 * 4 2 1 6 6 C 1.54952 * 100.93825 * 325.76522 * 5 4 2 7 7 H 1.08998 * 110.31173 * 277.52833 * 6 5 4 8 8 C 1.52996 * 110.30709 * 155.46169 * 6 5 4 9 9 N 1.46496 * 109.47357 * 179.97438 * 8 6 5 10 10 C 1.34782 * 120.00544 * 180.02562 * 9 8 6 11 11 O 1.21687 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.46370 * 120.00128 * 180.02562 * 10 9 8 13 13 H 1.08002 * 120.00260 * 359.97438 * 12 10 9 14 14 C 1.40047 * 119.99998 * 180.02562 * 12 10 9 15 15 N 1.30673 * 119.99836 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 120.00146 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47091 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47356 * 119.99651 * 16 14 12 19 19 H 1.48506 * 109.46685 * 239.99653 * 16 14 12 20 20 O 1.43640 * 105.13916 * 36.44606 * 6 5 4 21 21 H 1.09011 * 109.47343 * 299.06977 * 1 2 3 22 22 H 1.08996 * 109.47368 * 59.06957 * 1 2 3 23 23 H 1.09001 * 109.47534 * 179.07341 * 1 2 3 24 24 H 1.09002 * 110.84891 * 22.67796 * 4 2 1 25 25 H 1.09001 * 110.84460 * 259.25989 * 4 2 1 26 26 H 1.09000 * 111.12817 * 83.68227 * 5 4 2 27 27 H 1.08999 * 111.12381 * 207.85145 * 5 4 2 28 28 H 1.09001 * 109.47428 * 299.99986 * 8 6 5 29 29 H 1.08999 * 109.47411 * 60.00059 * 8 6 5 30 30 H 0.97011 * 120.00143 * 359.97438 * 9 8 6 31 31 H 0.97001 * 119.99542 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0537 -0.7465 1.2458 5 6 3.2755 -1.5220 0.6820 6 6 2.7811 -1.8489 -0.7497 7 1 2.1476 -2.7358 -0.7379 8 6 3.9715 -2.0601 -1.6872 9 7 3.4839 -2.3682 -3.0339 10 6 4.3603 -2.5946 -4.0326 11 8 5.5565 -2.5425 -3.8157 12 6 3.8730 -2.9019 -5.3782 13 1 2.8113 -2.9477 -5.5707 14 6 4.7836 -3.1377 -6.4157 15 7 6.0682 -3.0827 -6.1827 16 14 4.1618 -3.5292 -8.1332 17 1 2.6768 -3.5308 -8.1336 18 1 4.6563 -2.5020 -9.0849 19 1 4.6580 -4.8665 -8.5463 20 8 2.0217 -0.6993 -1.1560 21 1 -0.3634 0.4994 0.8983 22 1 -0.3634 0.5282 -0.8815 23 1 -0.3634 -1.0275 -0.0166 24 1 1.3011 -1.4348 1.6305 25 1 2.3638 -0.0424 2.0180 26 1 4.1637 -0.8908 0.6563 27 1 3.4594 -2.4329 1.2516 28 1 4.5754 -1.1531 -1.7178 29 1 4.5787 -2.8887 -1.3226 30 1 2.5303 -2.4101 -3.2067 31 1 6.6988 -3.2456 -6.9015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306970587.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -99.436186 kcal Electronic energy + Delta-G solvation = -14175.105353 eV Core-core repulsion = 11648.928794 eV Total energy + Delta-G solvation = -2526.176559 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.49579 -37.03224 -33.58726 -32.32511 -32.13928 -31.05273 -27.73604 -25.85930 -23.36477 -21.44479 -20.54873 -19.47257 -17.21857 -16.78280 -15.70556 -15.16129 -14.59603 -14.21242 -13.86872 -13.52830 -13.25546 -12.85104 -12.42634 -12.11688 -11.89789 -11.64371 -11.30228 -11.20165 -10.91495 -10.85360 -10.73991 -10.68794 -10.34703 -10.11685 -9.31909 -8.79214 -7.53284 -7.38087 -6.11442 -4.55721 3.17922 3.25704 3.30867 3.84810 4.17395 4.51716 4.66677 4.73142 4.75408 5.05949 5.23842 5.30536 5.44903 5.52267 5.63473 5.65711 5.72073 5.82050 5.91575 5.99558 6.08726 6.19276 6.43968 6.62291 7.26620 7.51029 8.04477 8.20706 8.42742 9.10185 9.64861 10.68108 10.87285 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055635 B = 0.006342 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.163480 B = 4414.158129 C = 4797.272724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.073 3.927 3 H 0.076 0.924 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.072 3.928 7 H 0.071 0.929 8 C 0.137 3.863 9 N -0.763 5.763 10 C 0.554 3.446 11 O -0.584 6.584 12 C -0.544 4.544 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.770 5.770 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.277 1.277 20 O -0.367 6.367 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.383 0.617 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.514 3.487 12.225 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.094 0.906 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.014 3.986 7 H 0.088 0.912 8 C 0.011 3.989 9 N -0.418 5.418 10 C 0.358 3.642 11 O -0.468 6.468 12 C -0.581 4.581 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.399 5.399 16 Si 0.732 3.268 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 O -0.287 6.287 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.215 0.785 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.464 3.573 12.110 15.201 hybrid contribution -0.750 -0.240 -0.638 1.014 sum -9.214 3.333 11.472 15.087 Atomic orbital electron populations 1.22120 0.95195 1.02469 1.02001 1.22780 0.94075 0.96400 0.85250 0.90563 1.23173 0.97942 0.99679 0.98039 1.23254 0.98549 1.01153 0.95772 1.23271 0.92927 0.89101 0.93264 0.91158 1.21017 0.93439 1.00050 0.84354 1.46021 1.09383 1.78496 1.07911 1.18228 0.85063 0.76666 0.84226 1.90585 1.15966 1.56590 1.83639 1.20931 0.93767 1.50939 0.92483 0.91397 1.25714 0.94389 0.93029 1.00085 1.70044 1.01810 1.35636 1.32434 0.86327 0.79817 0.78335 0.82315 1.18782 1.20193 1.20218 1.88630 1.70341 1.40367 1.29341 0.91917 0.91909 0.92266 0.90630 0.90341 0.89995 0.89896 0.92878 0.92277 0.78531 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.45 37.15 0.35 -1.30 16 2 C 0.07 0.89 4.18 -26.01 -0.11 0.78 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.15 -1.51 6.53 -24.78 -0.16 -1.68 16 5 C -0.15 -1.78 6.57 -24.48 -0.16 -1.94 16 6 C 0.07 1.12 3.48 -25.70 -0.09 1.03 16 7 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.14 2.78 5.40 -4.05 -0.02 2.76 16 9 N -0.76 -18.35 5.51 -61.73 -0.34 -18.69 16 10 C 0.55 16.59 7.75 -12.99 -0.10 16.49 16 11 O -0.58 -19.69 15.02 5.20 0.08 -19.61 16 12 C -0.54 -16.04 9.54 -35.63 -0.34 -16.38 16 13 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 14 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 15 N -0.77 -23.81 11.83 55.55 0.66 -23.15 16 16 Si 0.91 20.74 29.56 -169.99 -5.02 15.72 16 17 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 O -0.37 -6.06 10.69 -35.23 -0.38 -6.43 16 21 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.08 0.68 7.85 -51.93 -0.41 0.27 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.99 8.06 -51.93 -0.42 0.58 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.38 8.41 8.45 -40.82 -0.35 8.06 16 31 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 266.10 15.07 4.01 4.01 Total: -1.00 -35.47 266.10 -6.25 -41.71 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.52 Total: 4.28 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.73 Total: 2.17 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.32 Total: -41.84 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.30 Total: -26.05 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -35.47 -6.25 -41.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306970587.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.722 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds