Wall clock time and date at job start Sun Mar 29 2020 21:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.90078 * 2 1 4 4 C 1.54388 * 109.82990 * 120.92972 * 2 1 3 5 5 C 1.55308 * 102.43740 * 140.97207 * 4 2 1 6 6 C 1.54952 * 100.93825 * 325.76522 * 5 4 2 7 7 H 1.08998 * 110.31173 * 277.52833 * 6 5 4 8 8 C 1.52996 * 110.30709 * 155.46169 * 6 5 4 9 9 N 1.46496 * 109.47357 * 179.97438 * 8 6 5 10 10 C 1.34782 * 120.00544 * 180.02562 * 9 8 6 11 11 O 1.21687 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.46370 * 120.00128 * 180.02562 * 10 9 8 13 13 H 1.08002 * 120.00260 * 359.97438 * 12 10 9 14 14 C 1.40047 * 119.99998 * 180.02562 * 12 10 9 15 15 N 1.30673 * 119.99836 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 120.00146 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47091 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47356 * 119.99651 * 16 14 12 19 19 H 1.48506 * 109.46685 * 239.99653 * 16 14 12 20 20 O 1.43640 * 105.13916 * 36.44606 * 6 5 4 21 21 H 1.09011 * 109.47343 * 299.06977 * 1 2 3 22 22 H 1.08996 * 109.47368 * 59.06957 * 1 2 3 23 23 H 1.09001 * 109.47534 * 179.07341 * 1 2 3 24 24 H 1.09002 * 110.84891 * 22.67796 * 4 2 1 25 25 H 1.09001 * 110.84460 * 259.25989 * 4 2 1 26 26 H 1.09000 * 111.12817 * 83.68227 * 5 4 2 27 27 H 1.08999 * 111.12381 * 207.85145 * 5 4 2 28 28 H 1.09001 * 109.47428 * 299.99986 * 8 6 5 29 29 H 1.08999 * 109.47411 * 60.00059 * 8 6 5 30 30 H 0.97011 * 120.00143 * 359.97438 * 9 8 6 31 31 H 0.97001 * 119.99542 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0537 -0.7465 1.2458 5 6 3.2755 -1.5220 0.6820 6 6 2.7811 -1.8489 -0.7497 7 1 2.1476 -2.7358 -0.7379 8 6 3.9715 -2.0601 -1.6872 9 7 3.4839 -2.3682 -3.0339 10 6 4.3603 -2.5946 -4.0326 11 8 5.5565 -2.5425 -3.8157 12 6 3.8730 -2.9019 -5.3782 13 1 2.8113 -2.9477 -5.5707 14 6 4.7836 -3.1377 -6.4157 15 7 6.0682 -3.0827 -6.1827 16 14 4.1618 -3.5292 -8.1332 17 1 2.6768 -3.5308 -8.1336 18 1 4.6563 -2.5020 -9.0849 19 1 4.6580 -4.8665 -8.5463 20 8 2.0217 -0.6993 -1.1560 21 1 -0.3634 0.4994 0.8983 22 1 -0.3634 0.5282 -0.8815 23 1 -0.3634 -1.0275 -0.0166 24 1 1.3011 -1.4348 1.6305 25 1 2.3638 -0.0424 2.0180 26 1 4.1637 -0.8908 0.6563 27 1 3.4594 -2.4329 1.2516 28 1 4.5754 -1.1531 -1.7178 29 1 4.5787 -2.8887 -1.3226 30 1 2.5303 -2.4101 -3.2067 31 1 6.6988 -3.2456 -6.9015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306970587.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:37 Heat of formation + Delta-G solvation = -126.648239 kcal Electronic energy + Delta-G solvation = -14176.285356 eV Core-core repulsion = 11648.928794 eV Total energy + Delta-G solvation = -2527.356562 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65605 -39.18406 -35.43703 -34.48997 -33.19585 -32.43122 -29.38307 -27.69090 -24.69067 -22.51798 -21.88905 -21.37788 -19.24899 -17.94307 -17.50559 -16.76419 -16.30126 -15.82325 -15.34786 -15.04379 -14.51555 -14.32811 -13.80820 -13.67690 -13.16672 -13.02284 -12.80826 -12.70578 -12.66846 -12.58410 -12.05663 -11.92212 -11.71035 -11.67348 -10.95235 -10.47240 -9.88971 -9.48944 -8.30164 -6.86819 1.39835 1.40495 1.58854 2.25066 2.45614 2.73640 3.17286 3.56219 3.61117 3.85438 3.91656 4.13891 4.27000 4.40230 4.48373 4.60577 4.69574 4.79008 4.89780 4.94342 5.06585 5.12384 5.26938 5.31225 5.37692 5.86729 6.13156 6.22939 6.29160 6.85562 7.53204 8.47496 8.66463 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055635 B = 0.006342 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.163480 B = 4414.158129 C = 4797.272724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.059 3.941 3 H 0.077 0.923 4 C -0.138 4.138 5 C -0.146 4.146 6 C 0.079 3.921 7 H 0.082 0.918 8 C 0.135 3.865 9 N -0.752 5.752 10 C 0.535 3.465 11 O -0.635 6.635 12 C -0.574 4.574 13 H 0.085 0.915 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 1.002 2.998 17 H -0.248 1.248 18 H -0.267 1.267 19 H -0.265 1.265 20 O -0.400 6.400 21 H 0.089 0.911 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.029 0.971 29 H 0.054 0.946 30 H 0.394 0.606 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.512 3.314 12.574 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.002 3.998 3 H 0.094 0.906 4 C -0.175 4.175 5 C -0.184 4.184 6 C 0.021 3.979 7 H 0.100 0.900 8 C 0.011 3.989 9 N -0.406 5.406 10 C 0.339 3.661 11 O -0.523 6.523 12 C -0.611 4.611 13 H 0.104 0.896 14 C -0.188 4.188 15 N -0.453 5.453 16 Si 0.821 3.179 17 H -0.171 1.171 18 H -0.192 1.192 19 H -0.190 1.190 20 O -0.321 6.321 21 H 0.108 0.892 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.227 0.773 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.518 3.414 12.509 16.696 hybrid contribution -0.128 -0.133 -0.681 0.706 sum -10.646 3.280 11.828 16.248 Atomic orbital electron populations 1.22093 0.93649 1.02667 1.02858 1.23095 0.95355 0.96305 0.85057 0.90553 1.23161 0.97094 0.99890 0.97347 1.23265 0.99191 1.02399 0.93525 1.23156 0.91212 0.89688 0.93811 0.89989 1.21162 0.95669 0.98577 0.83529 1.45754 1.09275 1.76989 1.08582 1.18673 0.85016 0.76605 0.85818 1.90533 1.18075 1.58954 1.84711 1.21465 0.95010 1.51551 0.93041 0.89637 1.27028 0.94253 0.91860 1.05624 1.70202 1.03848 1.36430 1.34795 0.84921 0.79811 0.78479 0.74714 1.17101 1.19231 1.19011 1.88588 1.70601 1.40827 1.32089 0.89181 0.93025 0.92289 0.88833 0.87988 0.90673 0.87751 0.95292 0.92829 0.77251 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.45 71.98 0.68 -2.17 16 2 C 0.06 1.33 4.18 31.06 0.13 1.46 16 3 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.14 -2.32 6.53 31.86 0.21 -2.11 16 5 C -0.15 -3.19 6.57 32.05 0.21 -2.98 16 6 C 0.08 2.40 3.48 31.26 0.11 2.50 16 7 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 8 C 0.14 5.67 5.40 86.38 0.47 6.13 16 9 N -0.75 -37.11 5.51 -467.42 -2.57 -39.68 16 10 C 0.53 33.05 7.75 86.36 0.67 33.72 16 11 O -0.63 -44.71 15.02 -4.31 -0.06 -44.78 16 12 C -0.57 -34.28 9.54 24.83 0.24 -34.04 16 13 H 0.09 4.62 7.85 -2.91 -0.02 4.60 16 14 C 0.03 1.57 5.50 85.30 0.47 2.04 16 15 N -0.82 -52.06 11.83 21.84 0.26 -51.80 16 16 Si 1.00 42.30 29.56 68.60 2.03 44.33 16 17 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 O -0.40 -12.99 10.69 -148.98 -1.59 -14.58 16 21 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.09 1.29 7.85 -2.39 -0.02 1.27 16 25 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.75 8.06 -2.39 -0.02 1.73 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.39 17.48 8.45 -92.70 -0.78 16.70 16 31 H 0.28 15.62 8.29 -92.71 -0.77 14.85 16 Total: -1.00 -79.62 266.10 1.57 -78.06 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.33 Total: 23.90 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 3.18 Total: 4.56 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -2.32 Total: -91.49 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -1.66 Total: -59.36 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -79.62 1.57 -78.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306970587.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.592 kcal (2) G-P(sol) polarization free energy of solvation -79.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds