Wall clock time and date at job start Sun Mar 29 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.50542 * 2 1 4 4 C 1.53044 * 109.50317 * 120.07362 * 2 1 3 5 5 N 1.46847 * 109.51335 * 60.76766 * 4 2 1 6 6 C 1.46901 * 111.00144 * 185.83239 * 5 4 2 7 7 C 1.50696 * 109.47104 * 170.00196 * 6 5 4 8 8 H 1.07998 * 119.99941 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00025 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99965 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00187 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47027 * 89.99634 * 11 9 7 13 13 H 1.48498 * 109.47103 * 209.99750 * 11 9 7 14 14 H 1.48498 * 109.46998 * 330.00218 * 11 9 7 15 15 C 1.46830 * 111.21086 * 61.74856 * 5 4 2 16 16 C 1.53038 * 109.51757 * 298.25173 * 15 5 4 17 17 C 1.53117 * 109.50700 * 239.87835 * 2 1 3 18 18 H 1.09004 * 109.52347 * 177.81357 * 17 2 1 19 19 O 1.42901 * 109.52175 * 57.68131 * 17 2 1 20 20 H 1.09000 * 109.47333 * 299.92340 * 1 2 3 21 21 H 1.08993 * 109.46832 * 59.92822 * 1 2 3 22 22 H 1.09006 * 109.46711 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47699 * 180.02562 * 3 2 1 24 24 H 1.09008 * 109.46665 * 300.07948 * 3 2 1 25 25 H 1.09001 * 109.47042 * 60.07285 * 3 2 1 26 26 H 1.09002 * 109.46396 * 180.78076 * 4 2 1 27 27 H 1.08994 * 109.46485 * 300.76002 * 4 2 1 28 28 H 1.09001 * 109.46985 * 290.00439 * 6 5 4 29 29 H 1.09002 * 109.46593 * 50.00429 * 6 5 4 30 30 H 0.97000 * 119.99990 * 180.02562 * 10 9 7 31 31 H 1.08995 * 109.46742 * 178.23410 * 15 5 4 32 32 H 1.09004 * 109.45381 * 58.25744 * 15 5 4 33 33 H 1.08997 * 109.50308 * 299.23764 * 16 15 5 34 34 H 1.08996 * 109.53785 * 179.13596 * 16 15 5 35 35 H 0.96697 * 113.99604 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0410 -0.7229 1.2484 5 7 1.5676 -2.1130 1.2386 6 6 1.9223 -2.7988 2.4883 7 6 1.2171 -4.1292 2.5487 8 1 0.5705 -4.4349 1.7396 9 6 1.3975 -4.9563 3.6371 10 7 2.1854 -4.5842 4.6223 11 14 0.5229 -6.6051 3.7125 12 1 1.3785 -7.6481 3.0916 13 1 0.2585 -6.9609 5.1297 14 1 -0.7635 -6.5171 2.9758 15 6 2.0846 -2.8420 0.0736 16 6 1.5751 -2.1823 -1.2098 17 6 2.0413 -0.7243 -1.2484 18 1 3.1306 -0.6907 -1.2685 19 8 1.5220 -0.0863 -2.4169 20 1 -0.3634 0.5126 0.8907 21 1 -0.3633 0.5149 -0.8893 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1309 1.4417 -0.0005 24 1 1.6766 1.9566 -0.8894 25 1 1.6789 1.9559 0.8906 26 1 3.1309 -0.7104 1.2548 27 1 1.6668 -0.2182 2.1391 28 1 3.0002 -2.9570 2.5225 29 1 1.6176 -2.1871 3.3375 30 1 2.3126 -5.1662 5.3878 31 1 1.7424 -3.8761 0.1111 32 1 3.1744 -2.8194 0.0856 33 1 0.4858 -2.2167 -1.2289 34 1 1.9711 -2.7140 -2.0750 35 1 1.8056 -0.4942 -3.2465 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307014667.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:23 Heat of formation + Delta-G solvation = -84.131211 kcal Electronic energy + Delta-G solvation = -15168.832848 eV Core-core repulsion = 12779.153057 eV Total energy + Delta-G solvation = -2389.679791 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81255 -37.39701 -35.46085 -34.35380 -32.29775 -29.09819 -28.07092 -27.00568 -25.23631 -23.56332 -22.00233 -19.48212 -18.42017 -18.12569 -16.93640 -16.30778 -15.90474 -15.51719 -15.46859 -14.76098 -14.24812 -14.16068 -13.92761 -13.53841 -13.02824 -12.87100 -12.77965 -12.66365 -12.59305 -12.44298 -12.20404 -11.93063 -11.77812 -11.55435 -11.16827 -10.99705 -10.65970 -10.58537 -8.99118 -8.21220 -6.31472 1.40298 1.41935 1.53657 2.39586 3.10756 3.23063 3.38134 3.72015 3.86525 4.08592 4.23546 4.32492 4.46941 4.56745 4.67653 4.70562 4.83879 4.88111 4.92249 5.04230 5.10565 5.11857 5.17739 5.27868 5.30619 5.38260 5.44168 5.63368 5.66924 6.04763 6.34948 6.64249 6.84975 6.97150 7.38343 8.89972 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049948 B = 0.007795 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.453105 B = 3591.286035 C = 3831.886217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.130 4.130 4 C 0.065 3.935 5 N -0.539 5.539 6 C 0.208 3.792 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.000 4.000 10 N -0.935 5.935 11 Si 0.970 3.030 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.265 1.265 15 C 0.066 3.934 16 C -0.139 4.139 17 C 0.124 3.876 18 H 0.052 0.948 19 O -0.567 6.567 20 H 0.044 0.956 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.019 0.981 27 H 0.064 0.936 28 H -0.040 1.040 29 H 0.002 0.998 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 7.546 -12.567 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.053 4.053 3 C -0.188 4.188 4 C -0.063 4.063 5 N -0.263 5.263 6 C 0.082 3.918 7 C -0.560 4.560 8 H 0.081 0.919 9 C -0.197 4.197 10 N -0.576 5.576 11 Si 0.794 3.206 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.189 1.189 15 C -0.063 4.063 16 C -0.177 4.177 17 C 0.065 3.935 18 H 0.070 0.930 19 O -0.375 6.375 20 H 0.063 0.937 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.037 0.963 27 H 0.082 0.918 28 H -0.022 1.022 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.922 7.886 -11.990 14.381 hybrid contribution 1.036 -1.349 0.423 1.753 sum 0.115 6.538 -11.567 13.287 Atomic orbital electron populations 1.21588 0.93601 1.01672 1.00729 1.20562 0.97201 0.95523 0.92056 1.21729 1.00641 0.94034 1.02360 1.22143 0.96279 0.89741 0.98162 1.61940 1.59639 1.01558 1.03145 1.19354 0.92175 0.93419 0.86878 1.21451 1.27503 1.02219 1.04840 0.91852 1.25932 0.96163 1.02576 0.95069 1.70092 1.39141 1.38992 1.09363 0.85372 0.79015 0.78799 0.77375 1.19730 1.20748 1.18921 1.21891 0.95693 0.98378 0.90291 1.22318 1.02394 0.96268 0.96741 1.21648 0.95809 0.90528 0.85549 0.92972 1.86453 1.75964 1.58798 1.16297 0.93660 0.92048 0.93097 0.92691 0.91227 0.92374 0.96315 0.91794 1.02212 0.97948 0.92684 0.91675 0.96739 0.91038 0.89304 0.75921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.65 7.86 71.98 0.57 -3.08 16 2 C -0.05 -1.59 0.60 -52.13 -0.03 -1.62 16 3 C -0.13 -3.26 8.36 71.98 0.60 -2.66 16 4 C 0.07 2.43 4.18 86.33 0.36 2.79 16 5 N -0.54 -23.71 3.93 -900.96 -3.54 -27.25 16 6 C 0.21 11.35 4.72 85.56 0.40 11.75 16 7 C -0.52 -29.93 8.43 25.60 0.22 -29.71 16 8 H 0.06 3.56 7.12 -2.91 -0.02 3.53 16 9 C 0.00 0.03 5.46 84.65 0.46 0.49 16 10 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 11 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 15 C 0.07 2.55 5.29 86.33 0.46 3.00 16 16 C -0.14 -4.05 5.37 30.65 0.16 -3.88 16 17 C 0.12 3.31 2.63 30.68 0.08 3.39 16 18 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 19 O -0.57 -12.81 12.01 -148.98 -1.79 -14.60 16 20 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.73 7.63 -2.39 -0.02 1.71 16 22 H 0.05 1.77 6.01 -2.38 -0.01 1.75 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.65 7.76 -2.38 -0.02 1.63 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 2.46 8.01 -2.39 -0.02 2.44 16 28 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 29 H 0.00 0.14 7.99 -2.39 -0.02 0.12 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.06 2.76 6.69 -2.39 -0.02 2.75 16 32 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.07 2.23 6.58 -2.39 -0.02 2.21 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.39 5.31 9.09 -74.06 -0.67 4.64 16 Total: -1.00 -65.04 273.30 0.64 -64.39 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.38 Total: 7.03 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.28 Total: -19.53 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -3.26 Total: -83.88 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.79 Total: -14.60 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.04 0.64 -64.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307014667.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.737 kcal (2) G-P(sol) polarization free energy of solvation -65.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds