Wall clock time and date at job start Sun Mar 29 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.53346 * 2 1 4 4 C 1.53037 * 109.50392 * 239.90443 * 2 1 3 5 5 N 1.46847 * 109.52012 * 299.23395 * 4 2 1 6 6 C 1.46909 * 110.99663 * 174.16105 * 5 4 2 7 7 C 1.50703 * 109.47029 * 58.16579 * 6 5 4 8 8 H 1.08004 * 119.99785 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99970 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00367 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00209 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47374 * 89.99136 * 11 9 7 13 13 H 1.48502 * 109.47155 * 209.99796 * 11 9 7 14 14 H 1.48501 * 109.46706 * 329.99507 * 11 9 7 15 15 C 1.46841 * 111.20068 * 298.25673 * 5 4 2 16 16 C 1.53041 * 109.51945 * 61.74487 * 15 5 4 17 17 C 1.53116 * 109.50580 * 120.09775 * 2 1 3 18 18 H 1.08993 * 109.57647 * 182.22835 * 17 2 1 19 19 O 1.42905 * 109.52121 * 302.38615 * 17 2 1 20 20 H 1.08994 * 109.47608 * 299.90480 * 1 2 3 21 21 H 1.09004 * 109.47033 * 59.90420 * 1 2 3 22 22 H 1.09001 * 109.46866 * 179.89742 * 1 2 3 23 23 H 1.08994 * 109.46742 * 180.09844 * 3 2 1 24 24 H 1.09002 * 109.46999 * 300.09975 * 3 2 1 25 25 H 1.09002 * 109.46647 * 60.09588 * 3 2 1 26 26 H 1.09003 * 109.45997 * 179.22327 * 4 2 1 27 27 H 1.08994 * 109.46480 * 59.25519 * 4 2 1 28 28 H 1.08995 * 109.46714 * 178.16218 * 6 5 4 29 29 H 1.08996 * 109.47135 * 298.16469 * 6 5 4 30 30 H 0.96991 * 120.00427 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.46406 * 301.72965 * 15 5 4 32 32 H 1.08995 * 109.45485 * 181.75325 * 15 5 4 33 33 H 1.09003 * 109.50247 * 180.87810 * 16 15 5 34 34 H 1.08999 * 109.50168 * 60.76196 * 16 15 5 35 35 H 0.96696 * 114.00036 * 179.68047 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0409 -0.7234 -1.2481 5 7 1.5676 -2.1134 -1.2379 6 6 1.9224 -2.7995 -2.4875 7 6 3.4172 -2.7609 -2.6748 8 1 4.0412 -2.2749 -1.9394 9 6 3.9882 -3.3459 -3.7850 10 7 5.2926 -3.3118 -3.9488 11 14 2.9088 -4.1859 -5.0575 12 1 2.5046 -3.2002 -6.0920 13 1 3.6662 -5.2919 -5.6965 14 1 1.6976 -4.7333 -4.3952 15 6 2.0847 -2.8419 -0.0725 16 6 1.5750 -2.1817 1.2107 17 6 2.0412 -0.7238 1.2487 18 1 3.1304 -0.6900 1.2701 19 8 1.5206 -0.0862 2.4169 20 1 -0.3634 0.5123 0.8908 21 1 -0.3633 0.5153 -0.8892 22 1 -0.3633 -1.0277 -0.0018 23 1 3.1315 1.4408 -0.0018 24 1 1.6773 1.9568 -0.8891 25 1 1.6801 1.9557 0.8909 26 1 3.1309 -0.7109 -1.2544 27 1 1.6670 -0.2188 -2.1389 28 1 1.5888 -3.8361 -2.4402 29 1 1.4380 -2.2999 -3.3265 30 1 5.6943 -3.7231 -4.7301 31 1 3.1743 -2.8195 -0.0843 32 1 1.7423 -3.8760 -0.1096 33 1 1.9716 -2.7133 2.0757 34 1 0.4857 -2.2161 1.2297 35 1 1.8005 -0.4965 3.2466 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307014668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:26 Heat of formation + Delta-G solvation = -59.739947 kcal Electronic energy + Delta-G solvation = -15339.258960 eV Core-core repulsion = 12950.636854 eV Total energy + Delta-G solvation = -2388.622106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44827 -36.08033 -33.91785 -32.42273 -30.92234 -27.24315 -26.82446 -25.76948 -23.50713 -21.83197 -20.14751 -18.21332 -16.97268 -16.78015 -15.21299 -14.59159 -14.34702 -14.07329 -13.91901 -13.17580 -12.81840 -12.51407 -12.28640 -12.09415 -11.90311 -11.59363 -11.21560 -11.13149 -10.83428 -10.67394 -10.49791 -10.28710 -10.19681 -9.79374 -9.73748 -9.52549 -9.38022 -8.61666 -7.19228 -6.12708 -4.12721 3.26377 3.34015 3.37808 4.37788 4.46366 4.87851 5.05159 5.16288 5.21462 5.42834 5.57158 5.76475 5.79264 5.95699 6.09189 6.09986 6.18105 6.29653 6.32628 6.38590 6.45371 6.64476 6.65717 6.74741 6.75575 6.91482 6.98025 7.05849 7.54636 7.84845 8.04296 8.10948 8.42564 8.89275 9.50279 11.00200 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045752 B = 0.008602 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.847994 B = 3254.094612 C = 3291.493282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.054 4.054 3 C -0.136 4.136 4 C 0.074 3.926 5 N -0.532 5.532 6 C 0.153 3.847 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.879 3.121 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.264 1.264 15 C 0.064 3.936 16 C -0.149 4.149 17 C 0.115 3.885 18 H 0.049 0.951 19 O -0.567 6.567 20 H 0.048 0.952 21 H 0.045 0.955 22 H 0.066 0.934 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.305 4.417 9.128 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.055 4.055 3 C -0.194 4.194 4 C -0.055 4.055 5 N -0.256 5.256 6 C 0.027 3.973 7 C -0.590 4.590 8 H 0.092 0.908 9 C -0.131 4.131 10 N -0.538 5.538 11 Si 0.706 3.294 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.188 1.188 15 C -0.065 4.065 16 C -0.187 4.187 17 C 0.056 3.944 18 H 0.067 0.933 19 O -0.371 6.371 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.954 4.747 8.574 12.622 hybrid contribution 0.928 -0.955 -0.496 1.421 sum -7.026 3.792 8.078 11.358 Atomic orbital electron populations 1.21665 0.93904 1.02388 1.00191 1.20628 0.96915 0.94701 0.93254 1.21771 1.00567 0.95581 1.01459 1.21941 0.98545 0.89531 0.95453 1.62355 1.58151 1.01668 1.03380 1.20181 0.95401 0.94204 0.87549 1.21700 0.91571 1.37298 1.08422 0.90779 1.24975 0.94816 0.95461 0.97842 1.69925 1.09927 1.44887 1.29029 0.86791 0.81024 0.79635 0.81931 1.20178 1.21327 1.18824 1.21813 0.98288 0.97129 0.89295 1.22377 1.02388 0.95805 0.98105 1.21877 0.95973 0.91318 0.85231 0.93296 1.86494 1.76053 1.58776 1.15813 0.93315 0.93613 0.91481 0.93129 0.92862 0.92308 0.93666 0.91177 0.95326 0.95642 0.92681 0.93968 0.91535 0.92396 0.90663 0.78488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 7.87 37.16 0.29 -1.64 16 2 C -0.05 -0.89 0.60 -154.43 -0.09 -0.98 16 3 C -0.14 -2.02 8.36 37.16 0.31 -1.71 16 4 C 0.07 1.44 3.73 -3.83 -0.01 1.43 16 5 N -0.53 -10.99 4.14 -236.12 -0.98 -11.96 16 6 C 0.15 3.67 4.20 -4.97 -0.02 3.65 16 7 C -0.55 -15.20 8.29 -34.44 -0.29 -15.49 16 8 H 0.07 2.22 6.08 -52.48 -0.32 1.90 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 11 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 15 C 0.06 1.20 5.14 -3.84 -0.02 1.18 16 16 C -0.15 -2.27 5.37 -26.65 -0.14 -2.41 16 17 C 0.11 1.75 2.63 -26.61 -0.07 1.68 16 18 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 19 O -0.57 -7.67 12.00 -35.23 -0.42 -8.09 16 20 H 0.05 0.73 7.63 -51.93 -0.40 0.33 16 21 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 1.10 6.01 -51.93 -0.31 0.78 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.84 7.76 -51.93 -0.40 0.43 16 26 H 0.05 1.00 6.57 -51.93 -0.34 0.66 16 27 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 28 H 0.03 0.69 7.12 -51.93 -0.37 0.32 16 29 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.04 0.89 7.03 -51.93 -0.37 0.53 16 32 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.15 6.58 -51.93 -0.34 0.81 16 35 H 0.37 3.45 9.08 45.56 0.41 3.86 16 LS Contribution 266.61 15.07 4.02 4.02 Total: -1.00 -29.97 266.61 -6.37 -36.34 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.95 Total: 1.85 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -0.14 Total: -12.34 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.20 Total: -38.45 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.42 Total: -8.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.97 -6.37 -36.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307014668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.400 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds