Wall clock time and date at job start Sun Mar 29 2020 22:27:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53011 * 109.53346 * 2 1
4 4 C 1.53037 * 109.50392 * 239.90443 * 2 1 3
5 5 N 1.46847 * 109.52012 * 299.23395 * 4 2 1
6 6 C 1.46909 * 110.99663 * 174.16105 * 5 4 2
7 7 C 1.50703 * 109.47029 * 58.16579 * 6 5 4
8 8 H 1.08004 * 119.99785 * 359.97438 * 7 6 5
9 9 C 1.37870 * 119.99970 * 179.97438 * 7 6 5
10 10 N 1.31516 * 120.00367 * 179.97438 * 9 7 6
11 11 Si 1.86802 * 120.00209 * 0.02562 * 9 7 6
12 12 H 1.48496 * 109.47374 * 89.99136 * 11 9 7
13 13 H 1.48502 * 109.47155 * 209.99796 * 11 9 7
14 14 H 1.48501 * 109.46706 * 329.99507 * 11 9 7
15 15 C 1.46841 * 111.20068 * 298.25673 * 5 4 2
16 16 C 1.53041 * 109.51945 * 61.74487 * 15 5 4
17 17 C 1.53116 * 109.50580 * 120.09775 * 2 1 3
18 18 H 1.08993 * 109.57647 * 182.22835 * 17 2 1
19 19 O 1.42905 * 109.52121 * 302.38615 * 17 2 1
20 20 H 1.08994 * 109.47608 * 299.90480 * 1 2 3
21 21 H 1.09004 * 109.47033 * 59.90420 * 1 2 3
22 22 H 1.09001 * 109.46866 * 179.89742 * 1 2 3
23 23 H 1.08994 * 109.46742 * 180.09844 * 3 2 1
24 24 H 1.09002 * 109.46999 * 300.09975 * 3 2 1
25 25 H 1.09002 * 109.46647 * 60.09588 * 3 2 1
26 26 H 1.09003 * 109.45997 * 179.22327 * 4 2 1
27 27 H 1.08994 * 109.46480 * 59.25519 * 4 2 1
28 28 H 1.08995 * 109.46714 * 178.16218 * 6 5 4
29 29 H 1.08996 * 109.47135 * 298.16469 * 6 5 4
30 30 H 0.96991 * 120.00427 * 180.02562 * 10 9 7
31 31 H 1.08994 * 109.46406 * 301.72965 * 15 5 4
32 32 H 1.08995 * 109.45485 * 181.75325 * 15 5 4
33 33 H 1.09003 * 109.50247 * 180.87810 * 16 15 5
34 34 H 1.08999 * 109.50168 * 60.76196 * 16 15 5
35 35 H 0.96696 * 114.00036 * 179.68047 * 19 17 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0416 1.4420 0.0000
4 6 2.0409 -0.7234 -1.2481
5 7 1.5676 -2.1134 -1.2379
6 6 1.9224 -2.7995 -2.4875
7 6 3.4172 -2.7609 -2.6748
8 1 4.0412 -2.2749 -1.9394
9 6 3.9882 -3.3459 -3.7850
10 7 5.2926 -3.3118 -3.9488
11 14 2.9088 -4.1859 -5.0575
12 1 2.5046 -3.2002 -6.0920
13 1 3.6662 -5.2919 -5.6965
14 1 1.6976 -4.7333 -4.3952
15 6 2.0847 -2.8419 -0.0725
16 6 1.5750 -2.1817 1.2107
17 6 2.0412 -0.7238 1.2487
18 1 3.1304 -0.6900 1.2701
19 8 1.5206 -0.0862 2.4169
20 1 -0.3634 0.5123 0.8908
21 1 -0.3633 0.5153 -0.8892
22 1 -0.3633 -1.0277 -0.0018
23 1 3.1315 1.4408 -0.0018
24 1 1.6773 1.9568 -0.8891
25 1 1.6801 1.9557 0.8909
26 1 3.1309 -0.7109 -1.2544
27 1 1.6670 -0.2188 -2.1389
28 1 1.5888 -3.8361 -2.4402
29 1 1.4380 -2.2999 -3.3265
30 1 5.6943 -3.7231 -4.7301
31 1 3.1743 -2.8195 -0.0843
32 1 1.7423 -3.8760 -0.1096
33 1 1.9716 -2.7133 2.0757
34 1 0.4857 -2.2161 1.2297
35 1 1.8005 -0.4965 3.2466
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307014668.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:27:26
Heat of formation + Delta-G solvation = -82.301920 kcal
Electronic energy + Delta-G solvation = -15340.237321 eV
Core-core repulsion = 12950.636854 eV
Total energy + Delta-G solvation = -2389.600467 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 213.147 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.84957 -37.49907 -35.39050 -34.37143 -32.45940 -29.13978 -28.05700 -27.21281
-25.22123 -23.34255 -21.84047 -19.79571 -18.69916 -18.12251 -16.87887 -16.10695
-16.00546 -15.74926 -15.32908 -14.65840 -14.45949 -14.05892 -13.78132 -13.69158
-13.43310 -12.88617 -12.82108 -12.58442 -12.47450 -12.30182 -12.03597 -11.91272
-11.74912 -11.68787 -11.28885 -11.01046 -10.80418 -10.64861 -8.98683 -8.32937
-6.38283 1.35240 1.36234 1.48306 2.32782 3.02265 3.22347 3.39410
3.74647 3.86043 4.11357 4.23526 4.43277 4.48182 4.59007 4.70573
4.82312 4.87974 4.91434 4.94478 4.99063 5.05830 5.11562 5.14600
5.21723 5.27190 5.36885 5.43840 5.50651 5.66511 6.08693 6.33681
6.42311 6.68446 6.94926 7.28959 8.83279
Molecular weight = 213.15amu
Principal moments of inertia in cm(-1)
A = 0.045752 B = 0.008602 C = 0.008505
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 611.847994 B = 3254.094612 C = 3291.493282
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.055 4.055
3 C -0.132 4.132
4 C 0.079 3.921
5 N -0.525 5.525
6 C 0.159 3.841
7 C -0.550 4.550
8 H 0.034 0.966
9 C 0.010 3.990
10 N -0.948 5.948
11 Si 0.950 3.050
12 H -0.267 1.267
13 H -0.285 1.285
14 H -0.245 1.245
15 C 0.062 3.938
16 C -0.137 4.137
17 C 0.121 3.879
18 H 0.036 0.964
19 O -0.566 6.566
20 H 0.060 0.940
21 H 0.049 0.951
22 H 0.059 0.941
23 H 0.041 0.959
24 H 0.059 0.941
25 H 0.070 0.930
26 H 0.009 0.991
27 H 0.064 0.936
28 H 0.032 0.968
29 H 0.029 0.971
30 H 0.266 0.734
31 H 0.009 0.991
32 H 0.070 0.930
33 H 0.085 0.915
34 H 0.083 0.917
35 H 0.391 0.609
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.521 4.390 9.837 14.377
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.056 4.056
3 C -0.190 4.190
4 C -0.050 4.050
5 N -0.248 5.248
6 C 0.031 3.969
7 C -0.588 4.588
8 H 0.052 0.948
9 C -0.188 4.188
10 N -0.588 5.588
11 Si 0.773 3.227
12 H -0.192 1.192
13 H -0.210 1.210
14 H -0.168 1.168
15 C -0.066 4.066
16 C -0.175 4.175
17 C 0.062 3.938
18 H 0.054 0.946
19 O -0.374 6.374
20 H 0.078 0.922
21 H 0.068 0.932
22 H 0.078 0.922
23 H 0.061 0.939
24 H 0.078 0.922
25 H 0.089 0.911
26 H 0.027 0.973
27 H 0.082 0.918
28 H 0.051 0.949
29 H 0.047 0.953
30 H 0.075 0.925
31 H 0.027 0.973
32 H 0.088 0.912
33 H 0.104 0.896
34 H 0.102 0.898
35 H 0.240 0.760
Dipole moment (debyes) X Y Z Total
from point charges -10.184 4.727 9.324 14.595
hybrid contribution 1.685 -0.898 -0.623 2.009
sum -8.499 3.829 8.702 12.752
Atomic orbital electron populations
1.21585 0.92648 1.02126 1.00953 1.20602 0.97777 0.95120 0.92054
1.21736 1.00079 0.94752 1.02386 1.21907 0.96325 0.89365 0.97388
1.62405 1.57626 1.02044 1.02706 1.20064 0.92577 0.94828 0.89420
1.21908 0.93370 1.36208 1.07350 0.94809 1.25934 0.96158 0.96373
1.00332 1.70077 1.12097 1.46529 1.30126 0.85672 0.79504 0.78556
0.78987 1.19250 1.21033 1.16814 1.21879 0.96378 0.97812 0.90579
1.22298 1.02747 0.95677 0.96746 1.21634 0.95190 0.91245 0.85755
0.94623 1.86445 1.75872 1.58806 1.16241 0.92150 0.93239 0.92195
0.93934 0.92189 0.91072 0.97285 0.91768 0.94947 0.95294 0.92528
0.97253 0.91188 0.89635 0.89819 0.76023
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.31 7.87 71.98 0.57 -2.74 16
2 C -0.05 -1.72 0.60 -52.13 -0.03 -1.76 16
3 C -0.13 -3.74 8.36 71.99 0.60 -3.14 16
4 C 0.08 3.11 3.73 86.33 0.32 3.44 16
5 N -0.53 -21.53 4.14 -900.94 -3.73 -25.26 16
6 C 0.16 7.54 4.20 85.56 0.36 7.90 16
7 C -0.55 -31.18 8.29 25.60 0.21 -30.97 16
8 H 0.03 2.15 6.08 -2.91 -0.02 2.13 16
9 C 0.01 0.58 5.47 84.65 0.46 1.04 16
10 N -0.95 -59.16 13.96 21.44 0.30 -58.86 16
11 Si 0.95 43.85 27.47 68.60 1.88 45.73 16
12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
14 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16
15 C 0.06 2.34 5.14 86.33 0.44 2.78 16
16 C -0.14 -3.88 5.37 30.65 0.16 -3.71 16
17 C 0.12 3.49 2.63 30.67 0.08 3.57 16
18 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16
19 O -0.57 -13.51 12.00 -148.98 -1.79 -15.30 16
20 H 0.06 1.59 7.63 -2.39 -0.02 1.58 16
21 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16
22 H 0.06 1.79 6.01 -2.39 -0.01 1.78 16
23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16
24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
25 H 0.07 1.86 7.76 -2.39 -0.02 1.84 16
26 H 0.01 0.41 6.57 -2.39 -0.02 0.40 16
27 H 0.06 2.56 8.12 -2.39 -0.02 2.54 16
28 H 0.03 1.52 7.12 -2.39 -0.02 1.51 16
29 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16
30 H 0.27 15.50 8.31 -92.72 -0.77 14.73 16
31 H 0.01 0.40 7.03 -2.39 -0.02 0.39 16
32 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16
33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
34 H 0.08 2.30 6.58 -2.39 -0.02 2.28 16
35 H 0.39 5.86 9.08 -74.06 -0.67 5.18 16
Total: -1.00 -65.29 266.61 0.18 -65.11
By element:
Atomic # 1 Polarization: 11.83 SS G_CDS: 0.33 Total: 12.16 kcal
Atomic # 6 Polarization: -26.78 SS G_CDS: 3.18 Total: -23.59 kcal
Atomic # 7 Polarization: -80.68 SS G_CDS: -3.43 Total: -84.11 kcal
Atomic # 8 Polarization: -13.51 SS G_CDS: -1.79 Total: -15.30 kcal
Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal
Total: -65.29 0.18 -65.11 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307014668.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.195 kcal
(2) G-P(sol) polarization free energy of solvation -65.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.107 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds