Wall clock time and date at job start Sun Mar 29 2020 22:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.53346 * 2 1 4 4 C 1.53037 * 109.50392 * 239.90443 * 2 1 3 5 5 N 1.46847 * 109.52012 * 299.23395 * 4 2 1 6 6 C 1.46909 * 110.99663 * 174.16105 * 5 4 2 7 7 C 1.50703 * 109.47029 * 58.16579 * 6 5 4 8 8 H 1.08004 * 119.99785 * 359.97438 * 7 6 5 9 9 C 1.37870 * 119.99970 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00367 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00209 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47374 * 89.99136 * 11 9 7 13 13 H 1.48502 * 109.47155 * 209.99796 * 11 9 7 14 14 H 1.48501 * 109.46706 * 329.99507 * 11 9 7 15 15 C 1.46841 * 111.20068 * 298.25673 * 5 4 2 16 16 C 1.53041 * 109.51945 * 61.74487 * 15 5 4 17 17 C 1.53116 * 109.50580 * 120.09775 * 2 1 3 18 18 H 1.08993 * 109.57647 * 182.22835 * 17 2 1 19 19 O 1.42905 * 109.52121 * 302.38615 * 17 2 1 20 20 H 1.08994 * 109.47608 * 299.90480 * 1 2 3 21 21 H 1.09004 * 109.47033 * 59.90420 * 1 2 3 22 22 H 1.09001 * 109.46866 * 179.89742 * 1 2 3 23 23 H 1.08994 * 109.46742 * 180.09844 * 3 2 1 24 24 H 1.09002 * 109.46999 * 300.09975 * 3 2 1 25 25 H 1.09002 * 109.46647 * 60.09588 * 3 2 1 26 26 H 1.09003 * 109.45997 * 179.22327 * 4 2 1 27 27 H 1.08994 * 109.46480 * 59.25519 * 4 2 1 28 28 H 1.08995 * 109.46714 * 178.16218 * 6 5 4 29 29 H 1.08996 * 109.47135 * 298.16469 * 6 5 4 30 30 H 0.96991 * 120.00427 * 180.02562 * 10 9 7 31 31 H 1.08994 * 109.46406 * 301.72965 * 15 5 4 32 32 H 1.08995 * 109.45485 * 181.75325 * 15 5 4 33 33 H 1.09003 * 109.50247 * 180.87810 * 16 15 5 34 34 H 1.08999 * 109.50168 * 60.76196 * 16 15 5 35 35 H 0.96696 * 114.00036 * 179.68047 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0409 -0.7234 -1.2481 5 7 1.5676 -2.1134 -1.2379 6 6 1.9224 -2.7995 -2.4875 7 6 3.4172 -2.7609 -2.6748 8 1 4.0412 -2.2749 -1.9394 9 6 3.9882 -3.3459 -3.7850 10 7 5.2926 -3.3118 -3.9488 11 14 2.9088 -4.1859 -5.0575 12 1 2.5046 -3.2002 -6.0920 13 1 3.6662 -5.2919 -5.6965 14 1 1.6976 -4.7333 -4.3952 15 6 2.0847 -2.8419 -0.0725 16 6 1.5750 -2.1817 1.2107 17 6 2.0412 -0.7238 1.2487 18 1 3.1304 -0.6900 1.2701 19 8 1.5206 -0.0862 2.4169 20 1 -0.3634 0.5123 0.8908 21 1 -0.3633 0.5153 -0.8892 22 1 -0.3633 -1.0277 -0.0018 23 1 3.1315 1.4408 -0.0018 24 1 1.6773 1.9568 -0.8891 25 1 1.6801 1.9557 0.8909 26 1 3.1309 -0.7109 -1.2544 27 1 1.6670 -0.2188 -2.1389 28 1 1.5888 -3.8361 -2.4402 29 1 1.4380 -2.2999 -3.3265 30 1 5.6943 -3.7231 -4.7301 31 1 3.1743 -2.8195 -0.0843 32 1 1.7423 -3.8760 -0.1096 33 1 1.9716 -2.7133 2.0757 34 1 0.4857 -2.2161 1.2297 35 1 1.8005 -0.4965 3.2466 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307014668.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:26 Heat of formation + Delta-G solvation = -82.301920 kcal Electronic energy + Delta-G solvation = -15340.237321 eV Core-core repulsion = 12950.636854 eV Total energy + Delta-G solvation = -2389.600467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84957 -37.49907 -35.39050 -34.37143 -32.45940 -29.13978 -28.05700 -27.21281 -25.22123 -23.34255 -21.84047 -19.79571 -18.69916 -18.12251 -16.87887 -16.10695 -16.00546 -15.74926 -15.32908 -14.65840 -14.45949 -14.05892 -13.78132 -13.69158 -13.43310 -12.88617 -12.82108 -12.58442 -12.47450 -12.30182 -12.03597 -11.91272 -11.74912 -11.68787 -11.28885 -11.01046 -10.80418 -10.64861 -8.98683 -8.32937 -6.38283 1.35240 1.36234 1.48306 2.32782 3.02265 3.22347 3.39410 3.74647 3.86043 4.11357 4.23526 4.43277 4.48182 4.59007 4.70573 4.82312 4.87974 4.91434 4.94478 4.99063 5.05830 5.11562 5.14600 5.21723 5.27190 5.36885 5.43840 5.50651 5.66511 6.08693 6.33681 6.42311 6.68446 6.94926 7.28959 8.83279 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045752 B = 0.008602 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.847994 B = 3254.094612 C = 3291.493282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 C -0.132 4.132 4 C 0.079 3.921 5 N -0.525 5.525 6 C 0.159 3.841 7 C -0.550 4.550 8 H 0.034 0.966 9 C 0.010 3.990 10 N -0.948 5.948 11 Si 0.950 3.050 12 H -0.267 1.267 13 H -0.285 1.285 14 H -0.245 1.245 15 C 0.062 3.938 16 C -0.137 4.137 17 C 0.121 3.879 18 H 0.036 0.964 19 O -0.566 6.566 20 H 0.060 0.940 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.041 0.959 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.009 0.991 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.266 0.734 31 H 0.009 0.991 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 4.390 9.837 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.056 4.056 3 C -0.190 4.190 4 C -0.050 4.050 5 N -0.248 5.248 6 C 0.031 3.969 7 C -0.588 4.588 8 H 0.052 0.948 9 C -0.188 4.188 10 N -0.588 5.588 11 Si 0.773 3.227 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.168 1.168 15 C -0.066 4.066 16 C -0.175 4.175 17 C 0.062 3.938 18 H 0.054 0.946 19 O -0.374 6.374 20 H 0.078 0.922 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.027 0.973 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.027 0.973 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -10.184 4.727 9.324 14.595 hybrid contribution 1.685 -0.898 -0.623 2.009 sum -8.499 3.829 8.702 12.752 Atomic orbital electron populations 1.21585 0.92648 1.02126 1.00953 1.20602 0.97777 0.95120 0.92054 1.21736 1.00079 0.94752 1.02386 1.21907 0.96325 0.89365 0.97388 1.62405 1.57626 1.02044 1.02706 1.20064 0.92577 0.94828 0.89420 1.21908 0.93370 1.36208 1.07350 0.94809 1.25934 0.96158 0.96373 1.00332 1.70077 1.12097 1.46529 1.30126 0.85672 0.79504 0.78556 0.78987 1.19250 1.21033 1.16814 1.21879 0.96378 0.97812 0.90579 1.22298 1.02747 0.95677 0.96746 1.21634 0.95190 0.91245 0.85755 0.94623 1.86445 1.75872 1.58806 1.16241 0.92150 0.93239 0.92195 0.93934 0.92189 0.91072 0.97285 0.91768 0.94947 0.95294 0.92528 0.97253 0.91188 0.89635 0.89819 0.76023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 7.87 71.98 0.57 -2.74 16 2 C -0.05 -1.72 0.60 -52.13 -0.03 -1.76 16 3 C -0.13 -3.74 8.36 71.99 0.60 -3.14 16 4 C 0.08 3.11 3.73 86.33 0.32 3.44 16 5 N -0.53 -21.53 4.14 -900.94 -3.73 -25.26 16 6 C 0.16 7.54 4.20 85.56 0.36 7.90 16 7 C -0.55 -31.18 8.29 25.60 0.21 -30.97 16 8 H 0.03 2.15 6.08 -2.91 -0.02 2.13 16 9 C 0.01 0.58 5.47 84.65 0.46 1.04 16 10 N -0.95 -59.16 13.96 21.44 0.30 -58.86 16 11 Si 0.95 43.85 27.47 68.60 1.88 45.73 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.24 -10.47 6.54 99.48 0.65 -9.82 16 15 C 0.06 2.34 5.14 86.33 0.44 2.78 16 16 C -0.14 -3.88 5.37 30.65 0.16 -3.71 16 17 C 0.12 3.49 2.63 30.67 0.08 3.57 16 18 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 19 O -0.57 -13.51 12.00 -148.98 -1.79 -15.30 16 20 H 0.06 1.59 7.63 -2.39 -0.02 1.58 16 21 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 22 H 0.06 1.79 6.01 -2.39 -0.01 1.78 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.86 7.76 -2.39 -0.02 1.84 16 26 H 0.01 0.41 6.57 -2.39 -0.02 0.40 16 27 H 0.06 2.56 8.12 -2.39 -0.02 2.54 16 28 H 0.03 1.52 7.12 -2.39 -0.02 1.51 16 29 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 30 H 0.27 15.50 8.31 -92.72 -0.77 14.73 16 31 H 0.01 0.40 7.03 -2.39 -0.02 0.39 16 32 H 0.07 2.55 8.06 -2.39 -0.02 2.53 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.30 6.58 -2.39 -0.02 2.28 16 35 H 0.39 5.86 9.08 -74.06 -0.67 5.18 16 Total: -1.00 -65.29 266.61 0.18 -65.11 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.33 Total: 12.16 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 3.18 Total: -23.59 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -3.43 Total: -84.11 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.79 Total: -15.30 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 1.88 Total: 45.73 kcal Total: -65.29 0.18 -65.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307014668.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.195 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds