Wall clock time and date at job start Sun Mar 29 2020 22:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99627 * 2 1 4 4 H 1.48501 * 109.46790 * 239.99628 * 3 2 1 5 5 H 1.48497 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46922 * 120.00181 * 3 2 1 7 7 C 1.37871 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00268 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99646 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46810 * 180.02562 * 9 7 2 11 11 C 1.44307 * 110.99707 * 66.05211 * 10 9 7 12 12 C 1.53982 * 108.35078 * 221.36788 * 11 10 9 13 13 C 1.45884 * 112.65797 * 278.58524 * 12 11 10 14 14 C 1.54520 * 111.67234 * 61.50068 * 13 12 11 15 15 H 1.09002 * 109.56989 * 42.69099 * 14 13 12 16 16 C 1.52998 * 109.56914 * 162.93357 * 14 13 12 17 17 O 1.42894 * 109.47542 * 295.00086 * 16 14 13 18 18 C 1.50531 * 108.86317 * 282.74808 * 14 13 12 19 19 C 1.47980 * 111.06001 * 193.48537 * 10 9 7 20 20 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46926 * 60.01133 * 9 7 2 22 22 H 1.08997 * 109.47642 * 300.00246 * 9 7 2 23 23 H 1.09002 * 109.69591 * 101.63825 * 11 10 9 24 24 H 1.08996 * 109.69408 * 341.09135 * 11 10 9 25 25 H 1.08992 * 108.85034 * 39.40912 * 12 11 10 26 26 H 1.08999 * 108.84288 * 157.87879 * 12 11 10 27 27 H 1.09004 * 109.03836 * 182.06395 * 13 12 11 28 28 H 1.09000 * 109.04178 * 301.00924 * 13 12 11 29 29 H 1.09002 * 109.47469 * 55.00234 * 16 14 13 30 30 H 1.09003 * 109.47127 * 174.99826 * 16 14 13 31 31 H 0.96708 * 114.00369 * 180.02562 * 17 16 14 32 32 H 1.08995 * 108.79299 * 212.64751 * 18 14 13 33 33 H 1.09000 * 108.78853 * 330.98393 * 18 14 13 34 34 H 1.09003 * 108.71374 * 71.20090 * 19 10 9 35 35 H 1.08995 * 108.58416 * 313.13349 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 2.9574 -3.6533 1.2307 12 6 4.4251 -3.9742 0.8931 13 6 4.6566 -5.4005 0.6920 14 6 3.8310 -5.9512 -0.4924 15 1 3.8714 -5.2477 -1.3240 16 6 4.4039 -7.2995 -0.9333 17 8 5.7231 -7.1110 -1.4489 18 6 2.4036 -6.1304 -0.0490 19 6 1.5307 -4.8925 -0.3226 20 1 -0.4849 0.8401 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.5533 -4.4263 1.8844 24 1 2.8981 -2.6847 1.7271 25 1 4.7020 -3.4410 -0.0162 26 1 5.0581 -3.6282 1.7102 27 1 5.7158 -5.5643 0.4937 28 1 4.3775 -5.9373 1.5987 29 1 4.4409 -7.9756 -0.0791 30 1 3.7686 -7.7282 -1.7085 31 1 6.1486 -7.9261 -1.7486 32 1 1.9770 -6.9841 -0.5754 33 1 2.3917 -6.3367 1.0212 34 1 1.2542 -4.8857 -1.3769 35 1 0.6226 -4.9659 0.2758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307124714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:59 Heat of formation + Delta-G solvation = -61.761759 kcal Electronic energy + Delta-G solvation = -14896.645136 eV Core-core repulsion = 12507.935357 eV Total energy + Delta-G solvation = -2388.709779 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.87032 -36.63061 -34.17766 -32.26431 -31.99871 -28.13517 -26.05342 -24.99749 -22.75111 -21.69183 -19.79966 -18.96503 -17.19355 -16.30635 -15.38971 -14.97239 -14.74371 -14.38390 -13.99100 -13.24991 -13.13952 -12.51788 -12.43073 -12.00251 -11.85395 -11.60936 -10.97383 -10.82273 -10.58213 -10.50755 -10.35121 -10.18902 -10.04611 -9.83159 -9.75387 -9.53459 -9.14424 -8.38608 -7.02013 -5.97855 -3.98825 3.37022 3.40571 3.44202 4.29437 4.46389 4.92176 4.99734 5.16693 5.32831 5.37076 5.45428 5.57843 5.75414 5.80950 5.86826 5.95753 6.12464 6.19354 6.39605 6.44026 6.54264 6.58315 6.68479 6.78008 6.91756 7.05439 7.38330 7.45173 7.65913 7.89730 8.21002 8.41076 8.65474 9.10128 9.65275 11.12769 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.007309 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.961207 B = 3829.740003 C = 4108.696388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.197 3.803 10 N -0.547 5.547 11 C 0.073 3.927 12 C -0.116 4.116 13 C -0.099 4.099 14 C -0.080 4.080 15 H 0.091 0.909 16 C 0.081 3.919 17 O -0.570 6.570 18 C -0.110 4.110 19 C 0.065 3.935 20 H 0.261 0.739 21 H 0.027 0.973 22 H -0.011 1.011 23 H 0.020 0.980 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.372 0.628 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -13.601 0.337 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.272 5.272 11 C -0.056 4.056 12 C -0.154 4.154 13 C -0.136 4.136 14 C -0.099 4.099 15 H 0.109 0.891 16 C 0.003 3.997 17 O -0.375 6.375 18 C -0.148 4.148 19 C -0.063 4.063 20 H 0.070 0.930 21 H 0.045 0.955 22 H 0.007 0.993 23 H 0.038 0.962 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.218 0.782 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.959 -12.772 0.143 14.546 hybrid contribution -0.189 0.129 0.486 0.537 sum 6.771 -12.643 0.629 14.355 Atomic orbital electron populations 1.69958 1.06060 1.26782 1.51244 1.24991 0.94846 0.99262 0.95571 0.86570 0.79428 0.82811 0.78659 1.20183 1.21422 1.20298 1.21164 0.93570 0.89906 1.49667 0.91822 1.19715 0.90023 0.87222 0.95826 1.60798 1.29345 1.02852 1.34212 1.21650 0.92708 1.00513 0.90769 1.20510 0.97261 0.95845 1.01793 1.20516 0.99598 0.97060 0.96447 1.20867 0.93875 0.95378 0.99733 0.89110 1.22366 0.83216 0.97811 0.96275 1.86542 1.30176 1.36439 1.84320 1.21351 0.94840 0.97750 1.00822 1.22269 0.94445 0.89255 1.00379 0.92952 0.95507 0.99350 0.96182 0.90310 0.91069 0.93339 0.92219 0.93619 0.94280 0.94056 0.78225 0.92281 0.92586 0.91947 0.95981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.50 -14.38 8.12 -34.44 -0.28 -14.66 16 8 H 0.06 1.80 7.61 -52.49 -0.40 1.40 16 9 C 0.20 5.24 4.58 -4.97 -0.02 5.22 16 10 N -0.55 -12.03 4.00 -236.04 -0.94 -12.97 16 11 C 0.07 1.46 5.00 -4.70 -0.02 1.44 16 12 C -0.12 -2.04 5.38 -29.59 -0.16 -2.20 16 13 C -0.10 -1.51 4.72 -29.30 -0.14 -1.65 16 14 C -0.08 -1.19 2.13 -91.06 -0.19 -1.39 16 15 H 0.09 1.61 7.80 -51.93 -0.40 1.21 16 16 C 0.08 0.97 6.26 37.16 0.23 1.20 16 17 O -0.57 -7.02 12.98 -35.23 -0.46 -7.48 16 18 C -0.11 -1.61 4.83 -27.48 -0.13 -1.74 16 19 C 0.06 1.19 5.38 -2.75 -0.01 1.17 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 22 H -0.01 -0.32 8.11 -51.93 -0.42 -0.74 16 23 H 0.02 0.38 6.79 -51.93 -0.35 0.02 16 24 H 0.08 1.77 6.73 -51.93 -0.35 1.42 16 25 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 28 H 0.05 0.65 7.58 -51.93 -0.39 0.25 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.44 7.98 -51.93 -0.41 0.03 16 31 H 0.37 2.66 9.12 45.56 0.42 3.07 16 32 H 0.06 0.73 7.62 -51.93 -0.40 0.33 16 33 H 0.06 0.80 6.65 -51.93 -0.35 0.46 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.41 8.02 -51.93 -0.42 0.00 16 LS Contribution 273.31 15.07 4.12 4.12 Total: -1.00 -31.09 273.31 -7.50 -38.59 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.10 Total: -1.69 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.83 Total: -11.14 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: -0.21 Total: -39.37 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.46 Total: -7.48 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.09 -7.50 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307124714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.174 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds