Wall clock time and date at job start Sun Mar 29 2020 22:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99627 * 2 1 4 4 H 1.48501 * 109.46790 * 239.99628 * 3 2 1 5 5 H 1.48497 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46922 * 120.00181 * 3 2 1 7 7 C 1.37871 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00268 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99646 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46810 * 180.02562 * 9 7 2 11 11 C 1.44307 * 110.99707 * 66.05211 * 10 9 7 12 12 C 1.53982 * 108.35078 * 221.36788 * 11 10 9 13 13 C 1.45884 * 112.65797 * 278.58524 * 12 11 10 14 14 C 1.54520 * 111.67234 * 61.50068 * 13 12 11 15 15 H 1.09002 * 109.56989 * 42.69099 * 14 13 12 16 16 C 1.52998 * 109.56914 * 162.93357 * 14 13 12 17 17 O 1.42894 * 109.47542 * 295.00086 * 16 14 13 18 18 C 1.50531 * 108.86317 * 282.74808 * 14 13 12 19 19 C 1.47980 * 111.06001 * 193.48537 * 10 9 7 20 20 H 0.97002 * 119.99540 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46926 * 60.01133 * 9 7 2 22 22 H 1.08997 * 109.47642 * 300.00246 * 9 7 2 23 23 H 1.09002 * 109.69591 * 101.63825 * 11 10 9 24 24 H 1.08996 * 109.69408 * 341.09135 * 11 10 9 25 25 H 1.08992 * 108.85034 * 39.40912 * 12 11 10 26 26 H 1.08999 * 108.84288 * 157.87879 * 12 11 10 27 27 H 1.09004 * 109.03836 * 182.06395 * 13 12 11 28 28 H 1.09000 * 109.04178 * 301.00924 * 13 12 11 29 29 H 1.09002 * 109.47469 * 55.00234 * 16 14 13 30 30 H 1.09003 * 109.47127 * 174.99826 * 16 14 13 31 31 H 0.96708 * 114.00369 * 180.02562 * 17 16 14 32 32 H 1.08995 * 108.79299 * 212.64751 * 18 14 13 33 33 H 1.09000 * 108.78853 * 330.98393 * 18 14 13 34 34 H 1.09003 * 108.71374 * 71.20090 * 19 10 9 35 35 H 1.08995 * 108.58416 * 313.13349 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2058 -3.6156 -0.0005 11 6 2.9574 -3.6533 1.2307 12 6 4.4251 -3.9742 0.8931 13 6 4.6566 -5.4005 0.6920 14 6 3.8310 -5.9512 -0.4924 15 1 3.8714 -5.2477 -1.3240 16 6 4.4039 -7.2995 -0.9333 17 8 5.7231 -7.1110 -1.4489 18 6 2.4036 -6.1304 -0.0490 19 6 1.5307 -4.8925 -0.3226 20 1 -0.4849 0.8401 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8896 23 1 2.5533 -4.4263 1.8844 24 1 2.8981 -2.6847 1.7271 25 1 4.7020 -3.4410 -0.0162 26 1 5.0581 -3.6282 1.7102 27 1 5.7158 -5.5643 0.4937 28 1 4.3775 -5.9373 1.5987 29 1 4.4409 -7.9756 -0.0791 30 1 3.7686 -7.7282 -1.7085 31 1 6.1486 -7.9261 -1.7486 32 1 1.9770 -6.9841 -0.5754 33 1 2.3917 -6.3367 1.0212 34 1 1.2542 -4.8857 -1.3769 35 1 0.6226 -4.9659 0.2758 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307124714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:58 Heat of formation + Delta-G solvation = -84.680600 kcal Electronic energy + Delta-G solvation = -14897.638971 eV Core-core repulsion = 12507.935357 eV Total energy + Delta-G solvation = -2389.703614 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25146 -37.78316 -35.75414 -34.27507 -33.37758 -29.86780 -27.60850 -26.65111 -24.08074 -23.56243 -21.11878 -20.41592 -18.55409 -18.06137 -17.03524 -16.46987 -16.10843 -15.90325 -15.51067 -14.74367 -14.46606 -14.18267 -14.04318 -13.70416 -13.27916 -13.10309 -12.80101 -12.54982 -12.26539 -12.11126 -12.07004 -11.55402 -11.44597 -11.30454 -11.17385 -11.10099 -10.69431 -10.60236 -8.82606 -8.19870 -6.30279 1.39810 1.43387 1.51340 2.39984 3.11472 3.28153 3.46564 3.78284 4.05963 4.12766 4.28053 4.35866 4.46604 4.59680 4.65733 4.69129 4.81487 4.85080 4.92489 4.99973 5.12889 5.15392 5.24405 5.30045 5.40547 5.50833 5.53259 5.67287 5.68436 6.09387 6.48442 6.77005 6.89552 7.03773 7.39469 8.90460 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046120 B = 0.007309 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.961207 B = 3829.740003 C = 4108.696388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.212 3.788 10 N -0.554 5.554 11 C 0.074 3.926 12 C -0.105 4.105 13 C -0.096 4.096 14 C -0.082 4.082 15 H 0.055 0.945 16 C 0.087 3.913 17 O -0.593 6.593 18 C -0.100 4.100 19 C 0.059 3.941 20 H 0.264 0.736 21 H -0.001 1.001 22 H -0.040 1.040 23 H 0.037 0.963 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.395 0.605 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 -14.925 0.650 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.086 3.914 10 N -0.279 5.279 11 C -0.055 4.055 12 C -0.144 4.144 13 C -0.133 4.133 14 C -0.100 4.100 15 H 0.074 0.926 16 C 0.009 3.991 17 O -0.402 6.402 18 C -0.137 4.137 19 C -0.068 4.068 20 H 0.073 0.927 21 H 0.017 0.983 22 H -0.022 1.022 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.244 0.756 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 8.450 -14.135 0.452 16.474 hybrid contribution -0.661 0.501 0.373 0.910 sum 7.789 -13.633 0.825 15.723 Atomic orbital electron populations 1.70086 1.07712 1.27936 1.51886 1.25917 0.95753 1.03167 0.94849 0.85446 0.78177 0.77965 0.79094 1.19492 1.20646 1.19185 1.21439 0.93559 0.91101 1.49851 0.92102 1.19363 0.90048 0.88938 0.93052 1.60746 1.28416 1.03381 1.35368 1.21646 0.94267 0.99464 0.90086 1.20416 0.95291 0.97636 1.01020 1.20476 1.00090 0.95230 0.97528 1.20830 0.94182 0.96678 0.98358 0.92600 1.22259 0.83313 0.95851 0.97631 1.86477 1.30441 1.38652 1.84584 1.21276 0.94213 0.96280 1.01952 1.22410 0.95137 0.89337 0.99950 0.92680 0.98290 1.02241 0.94482 0.93370 0.93727 0.91821 0.91666 0.91662 0.91990 0.92586 0.75600 0.89139 0.91513 0.92468 0.96532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.52 -30.63 8.12 25.60 0.21 -30.42 16 8 H 0.06 3.53 7.61 -2.91 -0.02 3.51 16 9 C 0.21 11.82 4.58 85.56 0.39 12.21 16 10 N -0.55 -25.02 4.00 -900.69 -3.60 -28.62 16 11 C 0.07 3.00 5.00 87.12 0.44 3.43 16 12 C -0.11 -3.63 5.38 28.74 0.15 -3.48 16 13 C -0.10 -2.70 4.72 28.93 0.14 -2.56 16 14 C -0.08 -2.26 2.13 -11.08 -0.02 -2.28 16 15 H 0.06 1.95 7.80 -2.39 -0.02 1.93 16 16 C 0.09 1.76 6.26 71.98 0.45 2.21 16 17 O -0.59 -12.87 12.98 -148.98 -1.93 -14.80 16 18 C -0.10 -2.67 4.83 30.11 0.15 -2.53 16 19 C 0.06 2.18 5.38 86.41 0.47 2.65 16 20 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 21 H 0.00 -0.06 8.04 -2.39 -0.02 -0.08 16 22 H -0.04 -2.41 8.11 -2.39 -0.02 -2.42 16 23 H 0.04 1.36 6.79 -2.39 -0.02 1.34 16 24 H 0.05 2.22 6.73 -2.39 -0.02 2.21 16 25 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 26 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.06 1.80 7.45 -2.38 -0.02 1.78 16 28 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.98 7.98 -2.39 -0.02 0.96 16 31 H 0.39 4.36 9.12 -74.05 -0.68 3.68 16 32 H 0.09 1.90 7.62 -2.39 -0.02 1.88 16 33 H 0.07 1.68 6.65 -2.39 -0.02 1.67 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.02 0.62 8.02 -2.39 -0.02 0.60 16 Total: -1.00 -68.58 273.31 -0.02 -68.60 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.38 Total: 4.96 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 2.83 Total: -20.25 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.32 Total: -86.03 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -1.93 Total: -14.80 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.58 -0.02 -68.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307124714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.082 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds