Wall clock time and date at job start Sun Mar 29 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49826 * 2 1 4 4 C 1.53045 * 109.52441 * 120.04990 * 2 1 3 5 5 C 1.53044 * 109.53861 * 181.30265 * 4 2 1 6 6 H 1.08992 * 109.49926 * 58.65073 * 5 4 2 7 7 C 1.50704 * 109.49475 * 178.71556 * 5 4 2 8 8 O 1.20825 * 119.99879 * 359.92939 * 7 5 4 9 9 O 1.34226 * 119.99597 * 179.66015 * 7 5 4 10 10 C 1.53198 * 109.33643 * 298.68094 * 5 4 2 11 11 N 1.46921 * 108.77522 * 54.62275 * 10 5 4 12 12 C 1.36935 * 120.63040 * 126.37294 * 11 10 5 13 13 H 1.07996 * 119.99753 * 332.78968 * 12 11 10 14 14 C 1.38811 * 120.00167 * 152.79884 * 12 11 10 15 15 N 1.31622 * 120.00166 * 159.75082 * 14 12 11 16 16 Si 1.86799 * 119.99808 * 339.74419 * 14 12 11 17 17 H 1.48506 * 109.47079 * 94.89619 * 16 14 12 18 18 H 1.48500 * 109.47273 * 214.89613 * 16 14 12 19 19 H 1.48504 * 109.47306 * 334.89514 * 16 14 12 20 20 C 1.46930 * 118.73936 * 306.38981 * 11 10 5 21 21 H 1.09001 * 109.46599 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46569 * 300.06542 * 1 2 3 23 23 H 1.08997 * 109.46503 * 60.06736 * 1 2 3 24 24 H 1.09000 * 109.43453 * 61.29515 * 4 2 1 25 25 H 1.09001 * 109.48275 * 301.33753 * 4 2 1 26 26 H 0.96696 * 116.99811 * 180.27561 * 9 7 5 27 27 H 1.09004 * 109.58034 * 174.41122 * 10 5 4 28 28 H 1.08998 * 109.58274 * 294.83168 * 10 5 4 29 29 H 0.97005 * 119.99746 * 179.97438 * 15 14 12 30 30 H 1.08997 * 109.58493 * 173.40233 * 20 11 10 31 31 H 1.09007 * 109.58156 * 293.67921 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7223 1.2486 5 6 3.5716 -0.6942 1.2654 6 1 3.9166 0.3396 1.2538 7 6 4.0735 -1.3780 2.5111 8 8 3.2882 -1.8395 3.3050 9 8 5.3929 -1.4792 2.7358 10 6 4.1060 -1.4255 0.0299 11 7 3.5048 -0.8281 -1.1701 12 6 4.2933 -0.3771 -2.1948 13 1 5.3009 -0.0441 -1.9944 14 6 3.7974 -0.3476 -3.4910 15 7 4.3611 0.4267 -4.3939 16 14 2.3302 -1.4071 -3.9540 17 1 1.0848 -0.6070 -3.8352 18 1 2.4831 -1.8802 -5.3533 19 1 2.2563 -2.5764 -3.0415 20 6 2.0414 -0.7234 -1.2498 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3632 0.5148 0.8894 23 1 -0.3632 0.5128 -0.8906 24 1 1.6974 -1.7565 1.2358 25 1 1.6593 -0.2236 2.1393 26 1 5.6669 -1.9298 3.5463 27 1 5.1903 -1.3229 -0.0148 28 1 3.8388 -2.4807 0.0859 29 1 4.0147 0.4469 -5.2998 30 1 1.7634 -0.1577 -2.1390 31 1 1.6059 -1.7214 -1.3008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307234721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:14 Heat of formation + Delta-G solvation = -81.483008 kcal Electronic energy + Delta-G solvation = -14900.827988 eV Core-core repulsion = 12375.429937 eV Total energy + Delta-G solvation = -2525.398051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25506 -37.91446 -35.93731 -33.56920 -32.30445 -30.90271 -26.30959 -25.35174 -24.51178 -21.34142 -20.70208 -19.39156 -17.81026 -16.92780 -16.03241 -15.63724 -15.31773 -14.23141 -13.84521 -13.71578 -13.35346 -13.11274 -12.65133 -12.12588 -11.83998 -11.61875 -11.43176 -11.38114 -10.98437 -10.79411 -10.60967 -10.28268 -10.12920 -9.88742 -9.69233 -9.48305 -8.67583 -7.06642 -5.98580 -3.36321 2.40796 3.26899 3.30506 3.47102 3.49681 4.49776 4.86121 5.04340 5.20095 5.22931 5.43597 5.48510 5.73123 5.74561 5.94377 6.01052 6.12213 6.15342 6.23462 6.43088 6.46744 6.52916 6.57027 6.64244 6.69758 6.92157 7.89176 8.08778 8.28066 8.87484 9.66692 10.02219 11.16868 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034089 B = 0.011197 C = 0.009211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.186483 B = 2500.000450 C = 3039.161997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.088 4.088 5 C -0.101 4.101 6 H 0.110 0.890 7 C 0.488 3.512 8 O -0.527 6.527 9 O -0.513 6.513 10 C 0.162 3.838 11 N -0.602 5.602 12 C -0.264 4.264 13 H 0.088 0.912 14 C 0.026 3.974 15 N -0.906 5.906 16 Si 0.881 3.119 17 H -0.288 1.288 18 H -0.303 1.303 19 H -0.269 1.269 20 C 0.128 3.872 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.402 0.598 27 H 0.077 0.923 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.074 0.926 31 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.322 -2.301 11.132 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 H 0.094 0.906 4 C -0.126 4.126 5 C -0.122 4.122 6 H 0.128 0.872 7 C 0.331 3.669 8 O -0.416 6.416 9 O -0.324 6.324 10 C 0.035 3.965 11 N -0.325 5.325 12 C -0.392 4.392 13 H 0.106 0.894 14 C -0.173 4.173 15 N -0.548 5.548 16 Si 0.712 3.288 17 H -0.215 1.215 18 H -0.231 1.231 19 H -0.194 1.194 20 C 0.002 3.998 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.260 0.740 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.620 -2.173 10.771 11.569 hybrid contribution -0.637 -0.831 0.220 1.070 sum -4.257 -3.004 10.992 12.164 Atomic orbital electron populations 1.21763 0.95571 1.01491 1.01320 1.21663 0.94786 1.00652 0.95909 0.90626 1.21369 0.91809 1.01467 0.97918 1.21767 0.97594 1.01861 0.90994 0.87206 1.23837 0.79515 0.76050 0.87513 1.90662 1.56979 1.46117 1.47791 1.84625 1.26727 1.73661 1.47388 1.20804 0.97866 0.93693 0.84121 1.44334 1.00942 1.70072 1.17132 1.18919 0.98583 1.36591 0.85118 0.89396 1.25249 0.98005 0.98473 0.95595 1.69832 1.43026 1.37853 1.04140 0.86971 0.82677 0.82316 0.76882 1.21521 1.23086 1.19398 1.21479 0.84503 0.97419 0.96357 0.92956 0.92985 0.92617 0.91676 0.92030 0.74000 0.90469 0.95452 0.92682 0.90789 0.95359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.20 37.16 0.34 -1.76 16 2 C -0.11 -1.91 2.87 -90.50 -0.26 -2.17 16 3 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.09 -1.44 3.75 -26.69 -0.10 -1.54 16 5 C -0.10 -1.68 2.78 -91.64 -0.25 -1.94 16 6 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 7 C 0.49 7.52 7.63 36.01 0.27 7.80 16 8 O -0.53 -9.15 16.74 -18.75 -0.31 -9.46 16 9 O -0.51 -6.50 13.35 -39.25 -0.52 -7.02 16 10 C 0.16 3.15 5.73 -3.71 -0.02 3.13 16 11 N -0.60 -14.03 2.77 -172.32 -0.48 -14.51 16 12 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 13 H 0.09 2.55 8.05 -52.49 -0.42 2.13 16 14 C 0.03 0.74 5.24 -17.43 -0.09 0.65 16 15 N -0.91 -27.39 13.97 55.49 0.78 -26.62 16 16 Si 0.88 22.10 24.34 -169.99 -4.14 17.97 16 17 H -0.29 -6.95 6.70 56.52 0.38 -6.57 16 18 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 19 H -0.27 -6.64 6.45 56.52 0.36 -6.27 16 20 C 0.13 2.74 3.48 -3.71 -0.01 2.73 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 25 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 26 H 0.40 3.11 9.10 45.56 0.41 3.53 16 27 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.07 1.73 4.49 -51.93 -0.23 1.50 16 31 H 0.03 0.61 6.97 -51.93 -0.36 0.25 16 LS Contribution 252.06 15.07 3.80 3.80 Total: -1.00 -31.53 252.06 -4.74 -36.27 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.59 Total: 0.07 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.27 Total: -0.49 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.30 Total: -41.12 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.84 Total: -16.49 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.53 -4.74 -36.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307234721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.216 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds