Wall clock time and date at job start Sun Mar 29 2020 21:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49826 * 2 1 4 4 C 1.53045 * 109.52441 * 120.04990 * 2 1 3 5 5 C 1.53044 * 109.53861 * 181.30265 * 4 2 1 6 6 H 1.08992 * 109.49926 * 58.65073 * 5 4 2 7 7 C 1.50704 * 109.49475 * 178.71556 * 5 4 2 8 8 O 1.20825 * 119.99879 * 359.92939 * 7 5 4 9 9 O 1.34226 * 119.99597 * 179.66015 * 7 5 4 10 10 C 1.53198 * 109.33643 * 298.68094 * 5 4 2 11 11 N 1.46921 * 108.77522 * 54.62275 * 10 5 4 12 12 C 1.36935 * 120.63040 * 126.37294 * 11 10 5 13 13 H 1.07996 * 119.99753 * 332.78968 * 12 11 10 14 14 C 1.38811 * 120.00167 * 152.79884 * 12 11 10 15 15 N 1.31622 * 120.00166 * 159.75082 * 14 12 11 16 16 Si 1.86799 * 119.99808 * 339.74419 * 14 12 11 17 17 H 1.48506 * 109.47079 * 94.89619 * 16 14 12 18 18 H 1.48500 * 109.47273 * 214.89613 * 16 14 12 19 19 H 1.48504 * 109.47306 * 334.89514 * 16 14 12 20 20 C 1.46930 * 118.73936 * 306.38981 * 11 10 5 21 21 H 1.09001 * 109.46599 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.46569 * 300.06542 * 1 2 3 23 23 H 1.08997 * 109.46503 * 60.06736 * 1 2 3 24 24 H 1.09000 * 109.43453 * 61.29515 * 4 2 1 25 25 H 1.09001 * 109.48275 * 301.33753 * 4 2 1 26 26 H 0.96696 * 116.99811 * 180.27561 * 9 7 5 27 27 H 1.09004 * 109.58034 * 174.41122 * 10 5 4 28 28 H 1.08998 * 109.58274 * 294.83168 * 10 5 4 29 29 H 0.97005 * 119.99746 * 179.97438 * 15 14 12 30 30 H 1.08997 * 109.58493 * 173.40233 * 20 11 10 31 31 H 1.09007 * 109.58156 * 293.67921 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7223 1.2486 5 6 3.5716 -0.6942 1.2654 6 1 3.9166 0.3396 1.2538 7 6 4.0735 -1.3780 2.5111 8 8 3.2882 -1.8395 3.3050 9 8 5.3929 -1.4792 2.7358 10 6 4.1060 -1.4255 0.0299 11 7 3.5048 -0.8281 -1.1701 12 6 4.2933 -0.3771 -2.1948 13 1 5.3009 -0.0441 -1.9944 14 6 3.7974 -0.3476 -3.4910 15 7 4.3611 0.4267 -4.3939 16 14 2.3302 -1.4071 -3.9540 17 1 1.0848 -0.6070 -3.8352 18 1 2.4831 -1.8802 -5.3533 19 1 2.2563 -2.5764 -3.0415 20 6 2.0414 -0.7234 -1.2498 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3632 0.5148 0.8894 23 1 -0.3632 0.5128 -0.8906 24 1 1.6974 -1.7565 1.2358 25 1 1.6593 -0.2236 2.1393 26 1 5.6669 -1.9298 3.5463 27 1 5.1903 -1.3229 -0.0148 28 1 3.8388 -2.4807 0.0859 29 1 4.0147 0.4469 -5.2998 30 1 1.7634 -0.1577 -2.1390 31 1 1.6059 -1.7214 -1.3008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307234721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:14 Heat of formation + Delta-G solvation = -103.786958 kcal Electronic energy + Delta-G solvation = -14901.795160 eV Core-core repulsion = 12375.429937 eV Total energy + Delta-G solvation = -2526.365222 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50334 -39.41306 -37.10216 -35.34594 -33.82561 -32.78363 -27.67465 -27.23523 -25.92292 -23.08402 -22.00185 -20.83580 -19.02511 -18.80577 -17.45645 -17.18348 -16.81725 -15.89812 -15.44963 -15.13839 -15.05282 -14.49695 -14.28386 -13.62166 -13.42405 -13.16690 -13.02250 -12.55185 -12.52105 -12.35982 -12.18810 -11.82031 -11.59226 -11.46983 -11.40578 -11.30022 -10.69632 -9.00403 -8.16916 -5.50714 1.18276 1.30558 1.42297 1.50639 2.14098 2.41300 3.04660 3.30336 3.71534 3.90093 3.93645 4.09599 4.33925 4.50278 4.57495 4.64299 4.72461 4.83747 4.90425 4.95169 4.98320 5.14542 5.23279 5.31277 5.50251 5.62454 5.84857 6.12091 6.87098 7.03973 7.58393 7.98060 9.02331 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034089 B = 0.011197 C = 0.009211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.186483 B = 2500.000450 C = 3039.161997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.068 0.932 4 C -0.082 4.082 5 C -0.097 4.097 6 H 0.111 0.889 7 C 0.501 3.499 8 O -0.544 6.544 9 O -0.509 6.509 10 C 0.161 3.839 11 N -0.616 5.616 12 C -0.251 4.251 13 H 0.058 0.942 14 C -0.031 4.031 15 N -0.954 5.954 16 Si 0.942 3.058 17 H -0.273 1.273 18 H -0.311 1.311 19 H -0.261 1.261 20 C 0.122 3.878 21 H 0.059 0.941 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.427 0.573 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.660 -3.021 13.002 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.118 4.118 6 H 0.129 0.871 7 C 0.344 3.656 8 O -0.434 6.434 9 O -0.322 6.322 10 C 0.035 3.965 11 N -0.340 5.340 12 C -0.380 4.380 13 H 0.076 0.924 14 C -0.226 4.226 15 N -0.600 5.600 16 Si 0.771 3.229 17 H -0.200 1.200 18 H -0.240 1.240 19 H -0.185 1.185 20 C -0.003 4.003 21 H 0.078 0.922 22 H 0.095 0.905 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.288 0.712 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.958 -2.915 12.705 13.946 hybrid contribution -0.094 -0.599 -0.267 0.662 sum -5.053 -3.513 12.438 13.877 Atomic orbital electron populations 1.21748 0.93127 1.02419 1.02495 1.21556 0.96801 0.99643 0.94327 0.91348 1.21327 0.91287 1.01419 0.97930 1.21581 0.98115 1.01702 0.90371 0.87068 1.23335 0.80134 0.75439 0.86716 1.90668 1.57658 1.46826 1.48297 1.84561 1.25075 1.73632 1.48977 1.20870 0.97626 0.94131 0.83865 1.44435 1.01674 1.70630 1.17262 1.18870 0.97875 1.34935 0.86328 0.92381 1.25849 1.01248 0.99789 0.95705 1.69954 1.45510 1.39965 1.04534 0.85982 0.80218 0.80819 0.75891 1.19986 1.24034 1.18541 1.21552 0.83340 0.97748 0.97633 0.92162 0.90541 0.92800 0.91772 0.90133 0.71174 0.91006 0.94797 0.92883 0.93033 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.20 71.98 0.66 -2.98 16 2 C -0.10 -3.35 2.87 -10.71 -0.03 -3.38 16 3 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.08 -2.43 3.75 30.62 0.11 -2.32 16 5 C -0.10 -3.01 2.78 -11.46 -0.03 -3.04 16 6 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 7 C 0.50 14.02 7.63 71.24 0.54 14.56 16 8 O -0.54 -17.22 16.74 21.97 0.37 -16.85 16 9 O -0.51 -11.42 13.35 -51.38 -0.69 -12.11 16 10 C 0.16 6.05 5.73 86.37 0.49 6.54 16 11 N -0.62 -28.33 2.77 -699.09 -1.94 -30.27 16 12 C -0.25 -13.95 10.04 84.03 0.84 -13.10 16 13 H 0.06 3.50 8.05 -2.91 -0.02 3.48 16 14 C -0.03 -1.78 5.24 84.86 0.44 -1.34 16 15 N -0.95 -59.26 13.97 21.65 0.30 -58.95 16 16 Si 0.94 46.00 24.34 68.60 1.67 47.67 16 17 H -0.27 -12.57 6.70 99.48 0.67 -11.90 16 18 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 19 H -0.26 -12.22 6.45 99.48 0.64 -11.58 16 20 C 0.12 5.03 3.48 86.36 0.30 5.33 16 21 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 25 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 26 H 0.43 5.17 9.10 -74.06 -0.67 4.50 16 27 H 0.07 2.73 7.93 -2.38 -0.02 2.72 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 30 H 0.05 2.36 4.49 -2.39 -0.01 2.35 16 31 H 0.03 1.32 6.97 -2.38 -0.02 1.31 16 Total: -1.00 -67.42 252.06 3.40 -64.02 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.35 Total: 6.23 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 3.34 Total: 0.28 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -1.64 Total: -89.23 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.32 Total: -28.96 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.67 Total: 47.67 kcal Total: -67.42 3.40 -64.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307234721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.770 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds