Wall clock time and date at job start Sun Mar 29 2020 21:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50109 * 2 1 4 4 C 1.53042 * 109.49719 * 120.10286 * 2 1 3 5 5 C 1.53079 * 109.66054 * 58.64604 * 4 2 1 6 6 H 1.08998 * 109.38587 * 301.27846 * 5 4 2 7 7 C 1.50698 * 109.62172 * 181.17442 * 5 4 2 8 8 O 1.20827 * 119.99872 * 0.10281 * 7 5 4 9 9 O 1.34228 * 119.99873 * 180.10790 * 7 5 4 10 10 C 1.53191 * 109.29247 * 61.15307 * 5 4 2 11 11 N 1.46918 * 108.89709 * 305.57872 * 10 5 4 12 12 C 1.36932 * 120.63319 * 233.55838 * 11 10 5 13 13 H 1.08007 * 120.00241 * 152.60765 * 12 11 10 14 14 C 1.38813 * 119.99863 * 332.61538 * 12 11 10 15 15 N 1.31625 * 119.99739 * 159.33660 * 14 12 11 16 16 Si 1.86794 * 120.00011 * 339.33870 * 14 12 11 17 17 H 1.48497 * 109.47178 * 92.92396 * 16 14 12 18 18 H 1.48508 * 109.47073 * 212.91929 * 16 14 12 19 19 H 1.48498 * 109.47289 * 332.91871 * 16 14 12 20 20 C 1.46934 * 118.74082 * 53.53724 * 11 10 5 21 21 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47023 * 300.06375 * 1 2 3 23 23 H 1.09001 * 109.47049 * 60.06345 * 1 2 3 24 24 H 1.08995 * 109.46197 * 178.60469 * 4 2 1 25 25 H 1.09001 * 109.45432 * 298.56089 * 4 2 1 26 26 H 0.96701 * 116.99903 * 179.97438 * 9 7 5 27 27 H 1.09003 * 109.58283 * 185.71586 * 10 5 4 28 28 H 1.08998 * 109.58328 * 65.43901 * 10 5 4 29 29 H 0.97007 * 119.99883 * 179.97438 * 15 14 12 30 30 H 1.08997 * 109.58304 * 66.17533 * 20 11 10 31 31 H 1.08989 * 109.58965 * 186.46252 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7236 1.2481 5 6 1.5056 -2.1576 1.2673 6 1 0.4158 -2.1373 1.2579 7 6 1.9855 -2.8603 2.5110 8 8 2.6835 -2.2746 3.3045 9 8 1.6376 -4.1368 2.7372 10 6 2.0138 -2.9041 0.0298 11 7 1.6514 -2.1379 -1.1703 12 6 0.9630 -2.7305 -2.1949 13 1 0.3287 -2.1350 -2.8349 14 6 1.0803 -4.0967 -2.4111 15 7 0.1539 -4.7370 -3.0925 16 14 2.5526 -5.0262 -1.7349 17 1 2.2170 -5.5808 -0.3989 18 1 2.9037 -6.1359 -2.6573 19 1 3.7077 -4.1013 -1.6110 20 6 2.0412 -0.7235 -1.2499 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5148 0.8894 23 1 -0.3633 0.5129 -0.8906 24 1 3.1304 -0.7449 1.2350 25 1 1.6987 -0.1965 2.1388 26 1 1.9699 -4.5453 3.5483 27 1 1.5551 -3.8919 -0.0150 28 1 3.0976 -3.0066 0.0844 29 1 0.2360 -5.6917 -3.2439 30 1 3.1274 -0.6460 -1.2982 31 1 1.6028 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307234723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:19 Heat of formation + Delta-G solvation = -77.743566 kcal Electronic energy + Delta-G solvation = -15179.081313 eV Core-core repulsion = 12653.845417 eV Total energy + Delta-G solvation = -2525.235896 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.23875 -38.04106 -35.86834 -33.55824 -31.66310 -31.01605 -26.48722 -25.35891 -24.30803 -22.03904 -20.73434 -18.36601 -17.77072 -17.05162 -16.33396 -15.68689 -14.81713 -14.08610 -13.90646 -13.63314 -13.49264 -13.05964 -12.58883 -12.36750 -11.68065 -11.62920 -11.39353 -11.26196 -10.78376 -10.55519 -10.44430 -10.33138 -10.12017 -9.94200 -9.67940 -9.47097 -8.64897 -7.04552 -5.99449 -3.36126 2.46497 3.32108 3.35866 3.47428 3.49117 4.49736 4.87932 5.05950 5.22093 5.30798 5.44644 5.59202 5.75640 5.80376 5.90115 6.10947 6.16713 6.30275 6.34455 6.47510 6.52683 6.58125 6.66567 6.71036 6.76440 6.95338 7.89333 8.16064 8.28930 8.87406 9.66618 10.03142 11.16057 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.015356 C = 0.011065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.987649 B = 1822.975142 C = 2529.916162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.068 0.932 4 C -0.088 4.088 5 C -0.103 4.103 6 H 0.114 0.886 7 C 0.485 3.515 8 O -0.529 6.529 9 O -0.512 6.512 10 C 0.139 3.861 11 N -0.597 5.597 12 C -0.262 4.262 13 H 0.089 0.911 14 C 0.027 3.973 15 N -0.904 5.904 16 Si 0.873 3.127 17 H -0.282 1.282 18 H -0.301 1.301 19 H -0.271 1.271 20 C 0.148 3.852 21 H 0.070 0.930 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.402 0.598 27 H 0.085 0.915 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.025 0.975 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 5.309 8.869 10.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.086 0.914 4 C -0.126 4.126 5 C -0.124 4.124 6 H 0.132 0.868 7 C 0.328 3.672 8 O -0.418 6.418 9 O -0.322 6.322 10 C 0.012 3.988 11 N -0.320 5.320 12 C -0.390 4.390 13 H 0.106 0.894 14 C -0.172 4.172 15 N -0.546 5.546 16 Si 0.703 3.297 17 H -0.210 1.210 18 H -0.229 1.229 19 H -0.196 1.196 20 C 0.023 3.977 21 H 0.089 0.911 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.259 0.741 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.461 5.500 8.587 10.490 hybrid contribution 1.037 -0.988 0.989 1.741 sum 3.498 4.511 9.576 11.148 Atomic orbital electron populations 1.21780 0.94973 1.02926 1.00112 1.21614 0.96693 0.98497 0.96088 0.91351 1.21335 1.00645 0.92565 0.98048 1.21859 1.03717 0.96017 0.90818 0.86785 1.23923 0.76384 0.79346 0.87527 1.90646 1.36567 1.66726 1.47839 1.84661 1.71923 1.28375 1.47259 1.21324 0.97342 0.95732 0.84398 1.44281 1.65764 1.07027 1.14947 1.18902 1.20039 0.92176 1.07852 0.89364 1.25277 0.97662 0.96649 0.97635 1.69834 1.32462 1.08914 1.43410 0.87083 0.85517 0.79553 0.77542 1.20986 1.22949 1.19575 1.21064 0.96499 0.84665 0.95509 0.91069 0.94165 0.93059 0.91753 0.92071 0.74063 0.89725 0.95333 0.92657 0.95717 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.71 37.16 0.32 -1.89 16 2 C -0.11 -1.73 3.21 -90.50 -0.29 -2.02 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.09 -1.44 4.01 -26.67 -0.11 -1.55 16 5 C -0.10 -1.87 2.44 -91.63 -0.22 -2.09 16 6 H 0.11 2.04 6.35 -51.93 -0.33 1.71 16 7 C 0.49 8.41 7.63 36.00 0.27 8.69 16 8 O -0.53 -9.85 16.75 -18.75 -0.31 -10.16 16 9 O -0.51 -7.84 13.35 -39.25 -0.52 -8.36 16 10 C 0.14 3.00 3.41 -3.72 -0.01 2.99 16 11 N -0.60 -13.67 2.21 -172.32 -0.38 -14.05 16 12 C -0.26 -7.05 10.03 -15.06 -0.15 -7.20 16 13 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 14 C 0.03 0.77 5.23 -17.43 -0.09 0.68 16 15 N -0.90 -27.14 13.97 55.49 0.78 -26.36 16 16 Si 0.87 22.01 24.34 -169.99 -4.14 17.88 16 17 H -0.28 -6.91 6.62 56.52 0.37 -6.54 16 18 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 19 H -0.27 -6.75 6.64 56.52 0.38 -6.37 16 20 C 0.15 2.82 5.91 -3.70 -0.02 2.80 16 21 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 25 H 0.06 0.93 8.07 -51.93 -0.42 0.51 16 26 H 0.40 3.99 9.10 45.56 0.41 4.40 16 27 H 0.08 2.01 4.50 -51.93 -0.23 1.78 16 28 H 0.03 0.63 7.07 -51.93 -0.37 0.26 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.26 7.93 -51.94 -0.41 0.85 16 LS Contribution 247.63 15.07 3.73 3.73 Total: -1.00 -31.15 247.63 -4.53 -35.68 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.38 Total: 1.26 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.30 Total: 0.39 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.39 Total: -40.42 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.84 Total: -18.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.15 -4.53 -35.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307234723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.064 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds