Wall clock time and date at job start Sun Mar 29 2020 21:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.50109 * 2 1 4 4 C 1.53042 * 109.49719 * 120.10286 * 2 1 3 5 5 C 1.53079 * 109.66054 * 58.64604 * 4 2 1 6 6 H 1.08998 * 109.38587 * 301.27846 * 5 4 2 7 7 C 1.50698 * 109.62172 * 181.17442 * 5 4 2 8 8 O 1.20827 * 119.99872 * 0.10281 * 7 5 4 9 9 O 1.34228 * 119.99873 * 180.10790 * 7 5 4 10 10 C 1.53191 * 109.29247 * 61.15307 * 5 4 2 11 11 N 1.46918 * 108.89709 * 305.57872 * 10 5 4 12 12 C 1.36932 * 120.63319 * 233.55838 * 11 10 5 13 13 H 1.08007 * 120.00241 * 152.60765 * 12 11 10 14 14 C 1.38813 * 119.99863 * 332.61538 * 12 11 10 15 15 N 1.31625 * 119.99739 * 159.33660 * 14 12 11 16 16 Si 1.86794 * 120.00011 * 339.33870 * 14 12 11 17 17 H 1.48497 * 109.47178 * 92.92396 * 16 14 12 18 18 H 1.48508 * 109.47073 * 212.91929 * 16 14 12 19 19 H 1.48498 * 109.47289 * 332.91871 * 16 14 12 20 20 C 1.46934 * 118.74082 * 53.53724 * 11 10 5 21 21 H 1.08998 * 109.47552 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47023 * 300.06375 * 1 2 3 23 23 H 1.09001 * 109.47049 * 60.06345 * 1 2 3 24 24 H 1.08995 * 109.46197 * 178.60469 * 4 2 1 25 25 H 1.09001 * 109.45432 * 298.56089 * 4 2 1 26 26 H 0.96701 * 116.99903 * 179.97438 * 9 7 5 27 27 H 1.09003 * 109.58283 * 185.71586 * 10 5 4 28 28 H 1.08998 * 109.58328 * 65.43901 * 10 5 4 29 29 H 0.97007 * 119.99883 * 179.97438 * 15 14 12 30 30 H 1.08997 * 109.58304 * 66.17533 * 20 11 10 31 31 H 1.08989 * 109.58965 * 186.46252 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7236 1.2481 5 6 1.5056 -2.1576 1.2673 6 1 0.4158 -2.1373 1.2579 7 6 1.9855 -2.8603 2.5110 8 8 2.6835 -2.2746 3.3045 9 8 1.6376 -4.1368 2.7372 10 6 2.0138 -2.9041 0.0298 11 7 1.6514 -2.1379 -1.1703 12 6 0.9630 -2.7305 -2.1949 13 1 0.3287 -2.1350 -2.8349 14 6 1.0803 -4.0967 -2.4111 15 7 0.1539 -4.7370 -3.0925 16 14 2.5526 -5.0262 -1.7349 17 1 2.2170 -5.5808 -0.3989 18 1 2.9037 -6.1359 -2.6573 19 1 3.7077 -4.1013 -1.6110 20 6 2.0412 -0.7235 -1.2499 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5148 0.8894 23 1 -0.3633 0.5129 -0.8906 24 1 3.1304 -0.7449 1.2350 25 1 1.6987 -0.1965 2.1388 26 1 1.9699 -4.5453 3.5483 27 1 1.5551 -3.8919 -0.0150 28 1 3.0976 -3.0066 0.0844 29 1 0.2360 -5.6917 -3.2439 30 1 3.1274 -0.6460 -1.2982 31 1 1.6028 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307234723.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:19 Heat of formation + Delta-G solvation = -99.485235 kcal Electronic energy + Delta-G solvation = -15180.024103 eV Core-core repulsion = 12653.845417 eV Total energy + Delta-G solvation = -2526.178686 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.60830 -39.53352 -37.17998 -35.35360 -33.20267 -32.90379 -27.91244 -27.14154 -25.79101 -23.77410 -22.16479 -19.84055 -19.10769 -18.86659 -17.91594 -17.20733 -16.51152 -15.75506 -15.38824 -15.26425 -14.98618 -14.55536 -14.24269 -13.95506 -13.45946 -13.10536 -13.04826 -12.60470 -12.43831 -12.16600 -12.02415 -11.77203 -11.70527 -11.54547 -11.32935 -11.19490 -10.66106 -8.95455 -8.16149 -5.48059 1.10241 1.31091 1.40831 1.48143 2.11125 2.41318 3.05487 3.33630 3.68539 3.89566 3.97598 4.19558 4.28797 4.47965 4.50972 4.66110 4.81067 4.87749 4.96837 5.02036 5.05380 5.26368 5.31484 5.33528 5.54398 5.64358 5.87749 6.15062 6.89145 6.96963 7.60577 8.01474 9.03326 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.025801 B = 0.015356 C = 0.011065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.987649 B = 1822.975142 C = 2529.916162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.103 0.897 4 C -0.083 4.083 5 C -0.100 4.100 6 H 0.114 0.886 7 C 0.493 3.507 8 O -0.540 6.540 9 O -0.515 6.515 10 C 0.138 3.862 11 N -0.609 5.609 12 C -0.242 4.242 13 H 0.061 0.939 14 C -0.028 4.028 15 N -0.952 5.952 16 Si 0.930 3.070 17 H -0.272 1.272 18 H -0.310 1.310 19 H -0.265 1.265 20 C 0.141 3.859 21 H 0.040 0.960 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.426 0.574 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 6.506 10.740 13.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.121 0.879 4 C -0.121 4.121 5 C -0.121 4.121 6 H 0.132 0.868 7 C 0.336 3.664 8 O -0.430 6.430 9 O -0.328 6.328 10 C 0.012 3.988 11 N -0.333 5.333 12 C -0.371 4.371 13 H 0.078 0.922 14 C -0.224 4.224 15 N -0.598 5.598 16 Si 0.759 3.241 17 H -0.199 1.199 18 H -0.239 1.239 19 H -0.189 1.189 20 C 0.016 3.984 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.288 0.712 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.513 6.715 10.508 12.956 hybrid contribution 0.679 -1.299 0.430 1.527 sum 4.192 5.416 10.938 12.905 Atomic orbital electron populations 1.21732 0.94966 1.01309 1.01424 1.21560 0.96566 0.99708 0.94071 0.87932 1.21337 1.00536 0.91349 0.98885 1.21713 1.03783 0.96927 0.89660 0.86793 1.23581 0.75962 0.79788 0.87048 1.90648 1.36992 1.67168 1.48207 1.84605 1.71791 1.27486 1.48928 1.21201 0.97045 0.95062 0.85493 1.44363 1.65721 1.08551 1.14640 1.18842 1.18647 0.91848 1.07798 0.92159 1.25818 0.99785 0.97753 0.99009 1.69950 1.34363 1.09088 1.46368 0.86154 0.82615 0.78167 0.77132 1.19855 1.23922 1.18932 1.21290 0.97132 0.82628 0.97306 0.94097 0.91584 0.93068 0.91796 0.90173 0.71240 0.92105 0.95308 0.92941 0.94729 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.71 71.98 0.63 -3.36 16 2 C -0.10 -2.84 3.21 -10.71 -0.03 -2.87 16 3 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.08 -2.44 4.01 30.63 0.12 -2.32 16 5 C -0.10 -3.39 2.44 -11.45 -0.03 -3.42 16 6 H 0.11 3.89 6.35 -2.39 -0.02 3.87 16 7 C 0.49 15.75 7.63 71.24 0.54 16.29 16 8 O -0.54 -18.41 16.75 21.96 0.37 -18.05 16 9 O -0.51 -14.41 13.35 -51.39 -0.69 -15.09 16 10 C 0.14 5.77 3.41 86.36 0.29 6.06 16 11 N -0.61 -27.40 2.21 -699.10 -1.54 -28.94 16 12 C -0.24 -13.20 10.03 84.03 0.84 -12.36 16 13 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 14 C -0.03 -1.63 5.23 84.86 0.44 -1.19 16 15 N -0.95 -58.76 13.97 21.65 0.30 -58.46 16 16 Si 0.93 45.90 24.34 68.60 1.67 47.57 16 17 H -0.27 -12.79 6.62 99.48 0.66 -12.13 16 18 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 19 H -0.26 -12.61 6.64 99.48 0.66 -11.95 16 20 C 0.14 5.08 5.91 86.36 0.51 5.59 16 21 H 0.04 1.43 5.98 -2.39 -0.01 1.42 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.06 1.90 8.13 -2.39 -0.02 1.88 16 25 H 0.08 2.10 8.07 -2.39 -0.02 2.08 16 26 H 0.43 7.15 9.10 -74.06 -0.67 6.48 16 27 H 0.06 2.83 4.50 -2.39 -0.01 2.82 16 28 H 0.03 1.21 7.07 -2.39 -0.02 1.19 16 29 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 2.30 7.93 -2.39 -0.02 2.29 16 Total: -1.00 -66.63 247.63 3.80 -62.83 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.36 Total: 7.71 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 3.32 Total: 2.43 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.24 Total: -87.40 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.32 Total: -33.14 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.67 Total: 47.57 kcal Total: -66.63 3.80 -62.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307234723.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.655 kcal (2) G-P(sol) polarization free energy of solvation -66.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds