Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99880 * 2 1 4 4 O 1.21683 * 120.00011 * 180.02562 * 3 2 1 5 5 C 1.46373 * 120.00143 * 0.02562 * 3 2 1 6 6 H 1.08001 * 119.99611 * 0.02562 * 5 3 2 7 7 C 1.40045 * 120.00438 * 179.97438 * 5 3 2 8 8 N 1.30674 * 119.99799 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00532 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47339 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00695 * 9 7 5 12 12 H 1.48504 * 109.46636 * 60.00254 * 9 7 5 13 13 C 1.46499 * 119.99925 * 180.02562 * 2 1 3 14 14 H 1.09005 * 110.01357 * 178.60458 * 13 2 1 15 15 C 1.54269 * 110.03600 * 57.16247 * 13 2 1 16 16 C 1.54891 * 104.19458 * 217.10459 * 15 13 2 17 17 C 1.54884 * 102.74776 * 37.94417 * 16 15 13 18 18 C 1.53878 * 110.03054 * 299.99350 * 13 2 1 19 19 H 1.08995 * 110.03238 * 359.95452 * 18 13 2 20 20 O 1.42903 * 110.02976 * 238.57116 * 18 13 2 21 21 H 1.08999 * 109.47283 * 89.99876 * 1 2 3 22 22 H 1.09005 * 109.46528 * 209.99656 * 1 2 3 23 23 H 1.08991 * 109.47159 * 329.99441 * 1 2 3 24 24 H 0.96996 * 120.00331 * 179.97438 * 8 7 5 25 25 H 1.08994 * 110.48288 * 335.78890 * 15 13 2 26 26 H 1.09000 * 110.48171 * 98.42876 * 15 13 2 27 27 H 1.09006 * 110.75490 * 279.62446 * 16 15 13 28 28 H 1.09000 * 110.90880 * 156.33474 * 16 15 13 29 29 H 1.09008 * 110.48478 * 203.37551 * 17 16 15 30 30 H 1.08994 * 110.60424 * 80.79008 * 17 16 15 31 31 H 0.96706 * 113.99658 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3557 1.1672 -0.0005 5 6 1.4071 2.4348 0.0006 6 1 0.3270 2.4348 0.0014 7 6 2.1072 3.6477 0.0011 8 7 3.4139 3.6478 0.0006 9 14 1.1732 5.2655 0.0011 10 1 2.1381 6.3941 0.0011 11 1 0.3199 5.3444 -1.2116 12 1 0.3191 5.3438 1.2134 13 6 2.1975 -1.2687 -0.0006 14 1 3.2708 -1.0799 -0.0254 15 6 1.7812 -2.1189 -1.2187 16 6 1.7747 -3.5722 -0.6832 17 6 1.2113 -3.4059 0.7499 18 6 1.8352 -2.0871 1.2512 19 1 1.1150 -1.5399 1.8594 20 8 3.0119 -2.3611 2.0143 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3632 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 3.8989 4.4878 0.0006 25 1 0.7863 -1.8338 -1.5606 26 1 2.5076 -2.0124 -2.0243 27 1 2.7859 -3.9784 -0.6561 28 1 1.1218 -4.2053 -1.2840 29 1 1.5217 -4.2388 1.3809 30 1 0.1242 -3.3296 0.7282 31 1 2.8491 -2.8752 2.8171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307252992.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -91.076289 kcal Electronic energy + Delta-G solvation = -14806.593177 eV Core-core repulsion = 12280.779131 eV Total energy + Delta-G solvation = -2525.814047 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.05490 -36.78431 -34.69535 -33.01949 -32.40375 -28.19929 -27.32746 -25.93421 -24.96524 -20.65273 -20.50427 -18.50956 -17.02955 -16.22060 -15.62830 -15.41382 -15.05105 -14.17044 -13.75203 -13.37742 -12.72598 -12.25394 -12.15748 -11.97462 -11.52822 -11.40038 -11.26323 -10.99973 -10.86256 -10.82338 -10.35966 -10.27048 -10.13212 -10.00722 -9.55079 -8.82750 -7.54767 -7.19711 -6.16356 -4.62551 3.16472 3.21269 3.23110 4.07732 4.39383 4.56748 4.68558 4.91575 5.11404 5.22716 5.64172 5.74186 5.81930 5.88462 5.92491 6.01662 6.03498 6.10069 6.20388 6.33502 6.40975 6.54034 6.64330 6.82196 7.46460 7.67141 8.03222 8.16846 8.38527 9.04099 9.45540 10.60973 10.79727 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052039 B = 0.008401 C = 0.008037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.927169 B = 3332.132553 C = 3482.838614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.640 5.640 3 C 0.556 3.444 4 O -0.573 6.573 5 C -0.543 4.543 6 H 0.072 0.928 7 C 0.086 3.914 8 N -0.767 5.767 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.268 1.268 12 H -0.268 1.268 13 C 0.150 3.850 14 H 0.106 0.894 15 C -0.131 4.131 16 C -0.119 4.119 17 C -0.154 4.154 18 C 0.088 3.912 19 H 0.059 0.941 20 O -0.558 6.558 21 H 0.032 0.968 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.269 0.731 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -10.253 1.007 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.378 5.378 3 C 0.362 3.638 4 O -0.456 6.456 5 C -0.580 4.580 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.395 5.395 9 Si 0.732 3.268 10 H -0.205 1.205 11 H -0.193 1.193 12 H -0.193 1.193 13 C 0.044 3.956 14 H 0.124 0.876 15 C -0.169 4.169 16 C -0.157 4.157 17 C -0.192 4.192 18 C 0.027 3.973 19 H 0.077 0.923 20 O -0.362 6.362 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.905 -9.764 0.518 11.423 hybrid contribution -0.955 0.418 0.468 1.142 sum -6.860 -9.347 0.986 11.635 Atomic orbital electron populations 1.21362 0.82525 1.00909 0.99610 1.48010 1.04884 1.04905 1.79962 1.18297 0.87043 0.82246 0.76248 1.90599 1.14050 1.86064 1.54849 1.20958 0.93617 0.89194 1.54233 0.91012 1.25749 0.94619 1.00308 0.92668 1.70017 1.07067 1.27374 1.35074 0.86443 0.79832 0.81124 0.79404 1.20547 1.19281 1.19298 1.21116 1.00036 0.84199 0.90201 0.87607 1.22711 1.01934 0.94023 0.98274 1.22401 1.00884 0.96952 0.95437 1.23065 1.00268 0.98055 0.97825 1.22997 0.86517 0.94063 0.93694 0.92345 1.86642 1.33405 1.76841 1.39354 0.94973 0.94174 0.90971 0.92042 0.91216 0.91444 0.91390 0.91949 0.91598 0.91253 0.78761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.88 8.75 59.85 0.52 2.40 16 2 N -0.64 -15.00 2.75 -174.31 -0.48 -15.48 16 3 C 0.56 16.33 7.61 -12.99 -0.10 16.23 16 4 O -0.57 -19.24 14.37 5.20 0.07 -19.17 16 5 C -0.54 -15.51 8.74 -35.63 -0.31 -15.82 16 6 H 0.07 1.85 5.99 -52.49 -0.31 1.54 16 7 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 8 N -0.77 -23.40 11.83 55.55 0.66 -22.75 16 9 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 C 0.15 3.14 3.12 -66.81 -0.21 2.93 16 14 H 0.11 2.67 6.75 -51.93 -0.35 2.32 16 15 C -0.13 -2.19 6.42 -25.07 -0.16 -2.35 16 16 C -0.12 -1.60 6.91 -24.74 -0.17 -1.77 16 17 C -0.15 -2.01 6.56 -25.07 -0.16 -2.18 16 18 C 0.09 1.51 3.44 -25.61 -0.09 1.42 16 19 H 0.06 1.03 7.01 -51.93 -0.36 0.67 16 20 O -0.56 -9.85 13.21 -35.23 -0.47 -10.31 16 21 H 0.03 0.56 7.87 -51.93 -0.41 0.15 16 22 H 0.04 0.62 6.92 -51.93 -0.36 0.26 16 23 H 0.07 1.39 6.09 -51.93 -0.32 1.08 16 24 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 25 H 0.07 1.12 6.84 -51.93 -0.36 0.77 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.74 8.06 -51.92 -0.42 0.32 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.37 4.41 9.11 45.56 0.41 4.82 16 LS Contribution 255.61 15.07 3.85 3.85 Total: -1.00 -35.52 255.61 -5.46 -40.98 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.30 Total: 4.39 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.77 Total: 3.20 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.18 Total: -38.23 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.39 Total: -29.48 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -35.52 -5.46 -40.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252992.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.094 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds