Wall clock time and date at job start Sun Mar 29 2020 22:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 119.99880 * 2 1 4 4 O 1.21683 * 120.00011 * 180.02562 * 3 2 1 5 5 C 1.46373 * 120.00143 * 0.02562 * 3 2 1 6 6 H 1.08001 * 119.99611 * 0.02562 * 5 3 2 7 7 C 1.40045 * 120.00438 * 179.97438 * 5 3 2 8 8 N 1.30674 * 119.99799 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00532 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47339 * 180.02562 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00695 * 9 7 5 12 12 H 1.48504 * 109.46636 * 60.00254 * 9 7 5 13 13 C 1.46499 * 119.99925 * 180.02562 * 2 1 3 14 14 H 1.09005 * 110.01357 * 178.60458 * 13 2 1 15 15 C 1.54269 * 110.03600 * 57.16247 * 13 2 1 16 16 C 1.54891 * 104.19458 * 217.10459 * 15 13 2 17 17 C 1.54884 * 102.74776 * 37.94417 * 16 15 13 18 18 C 1.53878 * 110.03054 * 299.99350 * 13 2 1 19 19 H 1.08995 * 110.03238 * 359.95452 * 18 13 2 20 20 O 1.42903 * 110.02976 * 238.57116 * 18 13 2 21 21 H 1.08999 * 109.47283 * 89.99876 * 1 2 3 22 22 H 1.09005 * 109.46528 * 209.99656 * 1 2 3 23 23 H 1.08991 * 109.47159 * 329.99441 * 1 2 3 24 24 H 0.96996 * 120.00331 * 179.97438 * 8 7 5 25 25 H 1.08994 * 110.48288 * 335.78890 * 15 13 2 26 26 H 1.09000 * 110.48171 * 98.42876 * 15 13 2 27 27 H 1.09006 * 110.75490 * 279.62446 * 16 15 13 28 28 H 1.09000 * 110.90880 * 156.33474 * 16 15 13 29 29 H 1.09008 * 110.48478 * 203.37551 * 17 16 15 30 30 H 1.08994 * 110.60424 * 80.79008 * 17 16 15 31 31 H 0.96706 * 113.99658 * 180.02562 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3557 1.1672 -0.0005 5 6 1.4071 2.4348 0.0006 6 1 0.3270 2.4348 0.0014 7 6 2.1072 3.6477 0.0011 8 7 3.4139 3.6478 0.0006 9 14 1.1732 5.2655 0.0011 10 1 2.1381 6.3941 0.0011 11 1 0.3199 5.3444 -1.2116 12 1 0.3191 5.3438 1.2134 13 6 2.1975 -1.2687 -0.0006 14 1 3.2708 -1.0799 -0.0254 15 6 1.7812 -2.1189 -1.2187 16 6 1.7747 -3.5722 -0.6832 17 6 1.2113 -3.4059 0.7499 18 6 1.8352 -2.0871 1.2512 19 1 1.1150 -1.5399 1.8594 20 8 3.0119 -2.3611 2.0143 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3632 -0.8901 0.5138 23 1 -0.3633 0.8899 0.5139 24 1 3.8989 4.4878 0.0006 25 1 0.7863 -1.8338 -1.5606 26 1 2.5076 -2.0124 -2.0243 27 1 2.7859 -3.9784 -0.6561 28 1 1.1218 -4.2053 -1.2840 29 1 1.5217 -4.2388 1.3809 30 1 0.1242 -3.3296 0.7282 31 1 2.8491 -2.8752 2.8171 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307252992.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:09 Heat of formation + Delta-G solvation = -119.659215 kcal Electronic energy + Delta-G solvation = -14807.832626 eV Core-core repulsion = 12280.779131 eV Total energy + Delta-G solvation = -2527.053495 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.62760 -38.65561 -36.26657 -34.75758 -34.54673 -29.76288 -28.69155 -27.87098 -26.66889 -22.37170 -21.79642 -20.18990 -18.72301 -18.10511 -17.49533 -16.91282 -16.42269 -15.97904 -15.40883 -15.10892 -14.29767 -13.84736 -13.52413 -13.42820 -13.34565 -13.10072 -12.96320 -12.70129 -12.43284 -12.20894 -12.06717 -12.00779 -11.57026 -11.49169 -10.92735 -10.83344 -9.80827 -9.08827 -8.29227 -6.86198 1.38504 1.42767 1.54518 2.22697 2.44359 2.75340 3.35757 3.53546 3.76305 3.85113 4.07246 4.34638 4.51292 4.53476 4.57194 4.65265 4.77977 4.87481 4.97713 5.02111 5.12014 5.12949 5.27456 5.35249 5.41570 5.76754 6.13771 6.42235 6.85803 6.95415 7.41421 8.46721 8.67100 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052039 B = 0.008401 C = 0.008037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.927169 B = 3332.132553 C = 3482.838614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.642 5.642 3 C 0.533 3.467 4 O -0.635 6.635 5 C -0.568 4.568 6 H 0.097 0.903 7 C 0.024 3.976 8 N -0.825 5.825 9 Si 1.000 3.000 10 H -0.276 1.276 11 H -0.252 1.252 12 H -0.252 1.252 13 C 0.136 3.864 14 H 0.045 0.955 15 C -0.126 4.126 16 C -0.110 4.110 17 C -0.138 4.138 18 C 0.089 3.911 19 H 0.054 0.946 20 O -0.587 6.587 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.274 0.726 25 H 0.083 0.917 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 -11.215 1.161 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.378 5.378 3 C 0.339 3.661 4 O -0.523 6.523 5 C -0.604 4.604 6 H 0.115 0.885 7 C -0.191 4.191 8 N -0.454 5.454 9 Si 0.819 3.181 10 H -0.201 1.201 11 H -0.176 1.176 12 H -0.176 1.176 13 C 0.031 3.969 14 H 0.063 0.937 15 C -0.164 4.164 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.029 3.971 19 H 0.072 0.928 20 O -0.395 6.395 21 H 0.066 0.934 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -9.098 -10.800 0.685 14.138 hybrid contribution 0.059 0.640 0.437 0.777 sum -9.038 -10.160 1.122 13.644 Atomic orbital electron populations 1.21570 0.79349 1.02521 1.01092 1.47860 1.06910 1.04371 1.78688 1.18812 0.86690 0.84524 0.76043 1.90543 1.16635 1.87509 1.57569 1.21514 0.94946 0.89597 1.54333 0.88547 1.27106 0.95525 1.05255 0.91193 1.70220 1.09760 1.28966 1.36502 0.85044 0.78169 0.74460 0.80454 1.20074 1.17556 1.17572 1.21356 0.96566 0.84353 0.94613 0.93679 1.22660 1.01868 0.95860 0.96048 1.22397 1.01679 0.94579 0.96113 1.22999 1.01305 0.95929 0.97328 1.22891 0.86218 0.96023 0.91922 0.92782 1.86593 1.34247 1.77715 1.40946 0.93390 0.90230 0.91698 0.91659 0.89878 0.93046 0.91910 0.88433 0.88941 0.88699 0.75963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.46 8.75 127.77 1.12 4.58 16 2 N -0.64 -30.65 2.75 -823.61 -2.27 -32.92 16 3 C 0.53 32.73 7.61 86.36 0.66 33.38 16 4 O -0.64 -45.61 14.37 -4.29 -0.06 -45.67 16 5 C -0.57 -32.97 8.74 24.83 0.22 -32.76 16 6 H 0.10 4.92 5.99 -2.91 -0.02 4.90 16 7 C 0.02 1.37 5.50 85.30 0.47 1.84 16 8 N -0.82 -52.49 11.83 21.83 0.26 -52.23 16 9 Si 1.00 41.64 29.56 68.60 2.03 43.67 16 10 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 12 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 13 C 0.14 5.83 3.12 45.72 0.14 5.97 16 14 H 0.04 2.46 6.75 -2.38 -0.02 2.45 16 15 C -0.13 -4.11 6.42 31.67 0.20 -3.90 16 16 C -0.11 -2.60 6.91 31.88 0.22 -2.38 16 17 C -0.14 -3.03 6.56 31.67 0.21 -2.82 16 18 C 0.09 2.97 3.44 31.32 0.11 3.08 16 19 H 0.05 1.82 7.01 -2.39 -0.02 1.81 16 20 O -0.59 -20.65 13.21 -148.98 -1.97 -22.62 16 21 H 0.05 1.56 7.87 -2.39 -0.02 1.54 16 22 H 0.08 2.19 6.92 -2.38 -0.02 2.18 16 23 H 0.06 2.40 6.09 -2.39 -0.01 2.38 16 24 H 0.27 15.78 8.29 -92.71 -0.77 15.01 16 25 H 0.08 2.48 6.84 -2.39 -0.02 2.46 16 26 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.62 8.06 -2.38 -0.02 1.60 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.39 8.88 9.11 -74.05 -0.67 8.20 16 Total: -1.00 -83.94 255.61 1.80 -82.14 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.46 Total: 20.65 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 3.34 Total: 6.99 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -2.01 Total: -85.15 kcal Atomic # 8 Polarization: -66.26 SS G_CDS: -2.03 Total: -68.29 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -83.94 1.80 -82.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307252992.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.519 kcal (2) G-P(sol) polarization free energy of solvation -83.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds