Wall clock time and date at job start Sun Mar 29 2020 22:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00091 * 2 1 4 4 C 1.52996 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.44730 * 60.03482 * 4 3 2 6 6 C 1.53037 * 109.46671 * 180.02562 * 4 3 2 7 7 C 1.53191 * 109.31623 * 181.38709 * 6 4 3 8 8 N 1.46918 * 108.77610 * 305.36487 * 7 6 4 9 9 C 1.36939 * 120.62875 * 233.58805 * 8 7 6 10 10 H 1.08001 * 119.99849 * 152.62596 * 9 8 7 11 11 C 1.38815 * 120.00059 * 332.62788 * 9 8 7 12 12 N 1.31619 * 119.99784 * 159.34499 * 11 9 8 13 13 Si 1.86797 * 119.99778 * 339.34317 * 11 9 8 14 14 H 1.48501 * 109.46815 * 92.94264 * 13 11 9 15 15 H 1.48504 * 109.46873 * 212.93920 * 13 11 9 16 16 H 1.48500 * 109.47293 * 332.94418 * 13 11 9 17 17 C 1.46925 * 118.74245 * 53.60592 * 8 7 6 18 18 C 1.53047 * 109.45878 * 300.07343 * 4 3 2 19 19 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47125 * 299.99972 * 1 2 3 21 21 H 1.09001 * 109.46713 * 59.99920 * 1 2 3 22 22 H 1.09002 * 109.47420 * 60.00049 * 3 2 1 23 23 H 1.09001 * 109.47492 * 300.00366 * 3 2 1 24 24 H 1.09000 * 109.47227 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47130 * 299.96855 * 5 4 3 26 26 H 1.09001 * 109.47487 * 59.96754 * 5 4 3 27 27 H 1.09000 * 109.49878 * 61.43229 * 6 4 3 28 28 H 1.09009 * 109.49450 * 301.34216 * 6 4 3 29 29 H 1.09006 * 109.58644 * 65.15583 * 7 6 4 30 30 H 1.09004 * 109.58614 * 185.42812 * 7 6 4 31 31 H 0.97002 * 119.99729 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.58172 * 66.17896 * 17 8 7 33 33 H 1.08994 * 109.59028 * 186.61080 * 17 8 7 34 34 H 1.08996 * 109.49827 * 58.65821 * 18 4 3 35 35 H 1.08995 * 109.49263 * 298.55378 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9869 0.4259 -1.2489 6 6 4.1578 2.5828 0.0013 7 6 5.6842 2.4581 -0.0331 8 7 6.1143 1.6057 1.0837 9 6 7.0600 2.0439 1.9718 10 1 7.0663 1.6669 2.9838 11 6 8.0107 2.9728 1.5713 12 7 8.6458 3.6939 2.4707 13 14 8.3884 3.1993 -0.2440 14 1 7.5435 4.2901 -0.7930 15 1 9.8214 3.5512 -0.4112 16 1 8.1006 1.9367 -0.9708 17 6 5.5107 0.2741 1.2293 18 6 3.9861 0.4238 1.2498 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.6887 1.8464 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 5.0735 0.3400 -1.2491 25 1 3.5438 -0.5700 -1.2491 26 1 3.6650 0.9669 -2.1387 27 1 3.8564 3.1147 0.9037 28 1 3.8177 3.1327 -0.8764 29 1 5.9929 2.0077 -0.9765 30 1 6.1338 3.4462 0.0644 31 1 9.3104 4.3428 2.1909 32 1 5.8052 -0.3544 0.3888 33 1 5.8458 -0.1790 2.1622 34 1 3.5241 -0.5633 1.2609 35 1 3.6865 0.9765 2.1401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307426948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:53 Heat of formation + Delta-G solvation = -30.809140 kcal Electronic energy + Delta-G solvation = -15299.715125 eV Core-core repulsion = 12912.347553 eV Total energy + Delta-G solvation = -2387.367572 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.16178 -37.11183 -33.88790 -31.33516 -30.31651 -27.73234 -26.99916 -25.74533 -23.62156 -22.57744 -20.93854 -18.09379 -16.58148 -16.16425 -15.71690 -15.54629 -14.65805 -14.20128 -13.74089 -13.65024 -13.23736 -12.98302 -12.37610 -12.01234 -11.89603 -11.62194 -11.48479 -11.31474 -10.70911 -10.65677 -10.46075 -10.32551 -9.96770 -9.71869 -9.59959 -9.49033 -9.32227 -8.54623 -6.87619 -5.89760 -3.23987 3.35398 3.51660 3.55350 3.87847 4.58047 5.04545 5.09748 5.11335 5.28364 5.29895 5.36948 5.48085 5.58462 5.61514 5.73762 5.86484 5.99318 6.07349 6.16720 6.21085 6.35852 6.43974 6.53972 6.60604 6.68824 6.77490 6.80259 6.83313 7.09621 7.27438 8.03644 8.38935 9.01514 9.78707 10.18287 11.26594 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055866 B = 0.008705 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.079306 B = 3215.935880 C = 3369.900419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.072 3.928 4 C -0.051 4.051 5 C -0.139 4.139 6 C -0.124 4.124 7 C 0.128 3.872 8 N -0.606 5.606 9 C -0.256 4.256 10 H 0.085 0.915 11 C 0.021 3.979 12 N -0.911 5.911 13 Si 0.882 3.118 14 H -0.289 1.289 15 H -0.304 1.304 16 H -0.271 1.271 17 C 0.147 3.853 18 C -0.118 4.118 19 H 0.081 0.919 20 H 0.037 0.963 21 H 0.036 0.964 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.261 0.739 32 H 0.025 0.975 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.876 -5.195 -6.598 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.005 4.005 4 C -0.051 4.051 5 C -0.196 4.196 6 C -0.163 4.163 7 C 0.003 3.997 8 N -0.330 5.330 9 C -0.384 4.384 10 H 0.102 0.898 11 C -0.177 4.177 12 N -0.554 5.554 13 Si 0.713 3.287 14 H -0.217 1.217 15 H -0.232 1.232 16 H -0.196 1.196 17 C 0.021 3.979 18 C -0.158 4.158 19 H 0.100 0.900 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.615 -5.254 -6.541 15.992 hybrid contribution -0.013 0.586 -1.009 1.167 sum -13.628 -4.669 -7.550 16.264 Atomic orbital electron populations 1.22686 0.81984 1.02251 0.99586 1.87891 1.18744 1.28448 1.95295 1.22695 0.94346 0.83974 0.99438 1.20464 0.91147 0.96628 0.96866 1.21871 1.01957 0.99885 0.95912 1.22043 0.98501 0.94704 1.01040 1.21318 0.91837 0.95710 0.90883 1.44359 1.45475 1.12169 1.31032 1.18951 1.04957 1.22382 0.92123 0.89772 1.25277 0.97184 0.98197 0.97077 1.69845 1.28616 1.24008 1.32964 0.86950 0.76149 0.77996 0.87618 1.21726 1.23247 1.19563 1.20986 0.90631 0.87037 0.99212 1.21965 0.98211 0.99372 0.96204 0.90017 0.94391 0.94556 0.93577 0.93893 0.91712 0.92442 0.93738 0.91667 0.92904 0.95497 0.91121 0.92875 0.95748 0.92152 0.91983 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.41 9.33 -35.23 -0.33 -5.74 16 3 C 0.07 1.02 4.80 37.16 0.18 1.20 16 4 C -0.05 -0.84 0.60 -154.47 -0.09 -0.93 16 5 C -0.14 -2.20 7.57 37.16 0.28 -1.92 16 6 C -0.12 -2.24 4.91 -26.61 -0.13 -2.38 16 7 C 0.13 2.85 3.73 -3.72 -0.01 2.84 16 8 N -0.61 -14.78 2.77 -172.32 -0.48 -15.26 16 9 C -0.26 -7.30 10.04 -15.06 -0.15 -7.45 16 10 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 11 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 12 N -0.91 -28.37 13.97 55.49 0.78 -27.59 16 13 Si 0.88 22.81 24.35 -169.99 -4.14 18.67 16 14 H -0.29 -7.21 6.62 56.52 0.37 -6.83 16 15 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 16 H -0.27 -6.88 6.63 56.52 0.37 -6.50 16 17 C 0.15 3.03 6.05 -3.71 -0.02 3.00 16 18 C -0.12 -2.10 4.78 -26.60 -0.13 -2.22 16 19 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.06 1.13 4.98 -51.93 -0.26 0.87 16 25 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.03 0.60 5.63 -51.93 -0.29 0.30 16 30 H 0.07 1.73 4.50 -51.93 -0.23 1.49 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 33 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 34 H 0.06 1.02 7.64 -51.93 -0.40 0.63 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 264.18 15.07 3.98 3.98 Total: -1.00 -30.93 264.18 -5.00 -35.93 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.76 Total: -4.08 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 0.94 Total: -5.90 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.30 Total: -42.86 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.33 Total: -5.74 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.67 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.93 -5.00 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.124 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds