Wall clock time and date at job start Sun Mar 29 2020 22:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00091 * 2 1 4 4 C 1.52996 * 109.47427 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.44730 * 60.03482 * 4 3 2 6 6 C 1.53037 * 109.46671 * 180.02562 * 4 3 2 7 7 C 1.53191 * 109.31623 * 181.38709 * 6 4 3 8 8 N 1.46918 * 108.77610 * 305.36487 * 7 6 4 9 9 C 1.36939 * 120.62875 * 233.58805 * 8 7 6 10 10 H 1.08001 * 119.99849 * 152.62596 * 9 8 7 11 11 C 1.38815 * 120.00059 * 332.62788 * 9 8 7 12 12 N 1.31619 * 119.99784 * 159.34499 * 11 9 8 13 13 Si 1.86797 * 119.99778 * 339.34317 * 11 9 8 14 14 H 1.48501 * 109.46815 * 92.94264 * 13 11 9 15 15 H 1.48504 * 109.46873 * 212.93920 * 13 11 9 16 16 H 1.48500 * 109.47293 * 332.94418 * 13 11 9 17 17 C 1.46925 * 118.74245 * 53.60592 * 8 7 6 18 18 C 1.53047 * 109.45878 * 300.07343 * 4 3 2 19 19 H 1.08999 * 109.47002 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47125 * 299.99972 * 1 2 3 21 21 H 1.09001 * 109.46713 * 59.99920 * 1 2 3 22 22 H 1.09002 * 109.47420 * 60.00049 * 3 2 1 23 23 H 1.09001 * 109.47492 * 300.00366 * 3 2 1 24 24 H 1.09000 * 109.47227 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47130 * 299.96855 * 5 4 3 26 26 H 1.09001 * 109.47487 * 59.96754 * 5 4 3 27 27 H 1.09000 * 109.49878 * 61.43229 * 6 4 3 28 28 H 1.09009 * 109.49450 * 301.34216 * 6 4 3 29 29 H 1.09006 * 109.58644 * 65.15583 * 7 6 4 30 30 H 1.09004 * 109.58614 * 185.42812 * 7 6 4 31 31 H 0.97002 * 119.99729 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.58172 * 66.17896 * 17 8 7 33 33 H 1.08994 * 109.59028 * 186.61080 * 17 8 7 34 34 H 1.08996 * 109.49827 * 58.65821 * 18 4 3 35 35 H 1.08995 * 109.49263 * 298.55378 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9869 0.4259 -1.2489 6 6 4.1578 2.5828 0.0013 7 6 5.6842 2.4581 -0.0331 8 7 6.1143 1.6057 1.0837 9 6 7.0600 2.0439 1.9718 10 1 7.0663 1.6669 2.9838 11 6 8.0107 2.9728 1.5713 12 7 8.6458 3.6939 2.4707 13 14 8.3884 3.1993 -0.2440 14 1 7.5435 4.2901 -0.7930 15 1 9.8214 3.5512 -0.4112 16 1 8.1006 1.9367 -0.9708 17 6 5.5107 0.2741 1.2293 18 6 3.9861 0.4238 1.2498 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.6887 1.8464 0.8900 23 1 1.6886 1.8464 -0.8899 24 1 5.0735 0.3400 -1.2491 25 1 3.5438 -0.5700 -1.2491 26 1 3.6650 0.9669 -2.1387 27 1 3.8564 3.1147 0.9037 28 1 3.8177 3.1327 -0.8764 29 1 5.9929 2.0077 -0.9765 30 1 6.1338 3.4462 0.0644 31 1 9.3104 4.3428 2.1909 32 1 5.8052 -0.3544 0.3888 33 1 5.8458 -0.1790 2.1622 34 1 3.5241 -0.5633 1.2609 35 1 3.6865 0.9765 2.1401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307426948.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:52 Heat of formation + Delta-G solvation = -51.702376 kcal Electronic energy + Delta-G solvation = -15300.621124 eV Core-core repulsion = 12912.347553 eV Total energy + Delta-G solvation = -2388.273571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54558 -38.32569 -35.63182 -33.36887 -31.93477 -29.16188 -28.18581 -26.90247 -25.36010 -24.15647 -22.63422 -19.72569 -18.39607 -17.41237 -17.14192 -16.66995 -16.16026 -15.93932 -15.34640 -15.05975 -14.76999 -14.41210 -14.07011 -13.79142 -13.49451 -12.94436 -12.80605 -12.49628 -12.35171 -12.16227 -12.09730 -12.05766 -11.59215 -11.48919 -11.15941 -11.04221 -10.64483 -10.50153 -8.88593 -8.16157 -5.46865 1.29302 1.40995 1.50728 2.42171 2.89617 3.06870 3.38697 3.84164 3.90920 4.01370 4.36081 4.39171 4.48576 4.51947 4.59238 4.61441 4.66692 4.76067 4.78114 4.89453 4.90215 4.93892 5.05035 5.13287 5.22275 5.30395 5.35361 5.40970 5.63387 5.88309 6.13398 6.32567 6.93678 7.64353 8.05695 9.04089 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055866 B = 0.008705 C = 0.008307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.079306 B = 3215.935880 C = 3369.900419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.079 3.921 4 C -0.051 4.051 5 C -0.133 4.133 6 C -0.117 4.117 7 C 0.122 3.878 8 N -0.620 5.620 9 C -0.248 4.248 10 H 0.049 0.951 11 C -0.036 4.036 12 N -0.959 5.959 13 Si 0.948 3.052 14 H -0.272 1.272 15 H -0.311 1.311 16 H -0.262 1.262 17 C 0.143 3.857 18 C -0.108 4.108 19 H 0.096 0.904 20 H 0.043 0.957 21 H 0.050 0.950 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.261 0.739 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.010 -5.702 -8.876 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.003 3.997 4 C -0.051 4.051 5 C -0.190 4.190 6 C -0.156 4.156 7 C -0.003 4.003 8 N -0.345 5.345 9 C -0.378 4.378 10 H 0.067 0.933 11 C -0.231 4.231 12 N -0.605 5.605 13 Si 0.776 3.224 14 H -0.199 1.199 15 H -0.240 1.240 16 H -0.186 1.186 17 C 0.018 3.982 18 C -0.146 4.146 19 H 0.114 0.886 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.799 -5.787 -8.842 19.007 hybrid contribution 0.580 0.666 -0.222 0.910 sum -15.219 -5.121 -9.064 18.439 Atomic orbital electron populations 1.22895 0.79964 1.03622 1.00555 1.87844 1.20912 1.28200 1.95490 1.22516 0.92303 0.84473 1.00443 1.20431 0.93149 0.95198 0.96342 1.21803 1.00593 1.00487 0.96146 1.21928 0.95343 0.96306 1.01988 1.21389 0.94699 0.94016 0.90160 1.44484 1.45039 1.14023 1.30952 1.18888 1.05799 1.21518 0.91606 0.93344 1.25907 0.97420 0.98443 1.01319 1.69975 1.29959 1.25434 1.35151 0.85889 0.75488 0.78665 0.82319 1.19908 1.23955 1.18612 1.21133 0.92558 0.85407 0.99063 1.21826 0.95685 1.00396 0.96732 0.88565 0.93791 0.93182 0.93521 0.91980 0.93678 0.91733 0.91902 0.92749 0.89831 0.94542 0.93483 0.92979 0.94575 0.93328 0.90400 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -9.92 9.33 -148.98 -1.39 -11.31 16 3 C 0.08 1.95 4.80 71.98 0.35 2.29 16 4 C -0.05 -1.52 0.60 -52.15 -0.03 -1.56 16 5 C -0.13 -3.74 7.57 71.98 0.54 -3.19 16 6 C -0.12 -3.93 4.91 30.67 0.15 -3.78 16 7 C 0.12 5.23 3.73 86.36 0.32 5.55 16 8 N -0.62 -30.12 2.77 -699.09 -1.94 -32.06 16 9 C -0.25 -14.56 10.04 84.03 0.84 -13.71 16 10 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 11 C -0.04 -2.18 5.23 84.86 0.44 -1.74 16 12 N -0.96 -61.51 13.97 21.65 0.30 -61.21 16 13 Si 0.95 47.46 24.35 68.60 1.67 49.13 16 14 H -0.27 -12.79 6.62 99.48 0.66 -12.13 16 15 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 16 H -0.26 -12.57 6.63 99.48 0.66 -11.91 16 17 C 0.14 5.80 6.05 86.37 0.52 6.32 16 18 C -0.11 -3.63 4.78 30.68 0.15 -3.48 16 19 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 20 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 21 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.04 1.43 4.98 -2.39 -0.01 1.42 16 25 H 0.06 1.72 7.68 -2.39 -0.02 1.70 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.04 1.51 5.63 -2.38 -0.01 1.50 16 30 H 0.05 2.23 4.50 -2.38 -0.01 2.22 16 31 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 32 H 0.04 1.40 6.69 -2.39 -0.02 1.38 16 33 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 34 H 0.08 2.39 7.64 -2.39 -0.02 2.37 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.05 264.18 4.13 -62.92 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 0.95 Total: 4.14 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.54 Total: -11.61 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -1.63 Total: -93.27 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -1.39 Total: -11.31 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.67 Total: 49.13 kcal Total: -67.05 4.13 -62.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307426948.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.215 kcal (2) G-P(sol) polarization free energy of solvation -67.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds