Wall clock time and date at job start Sun Mar 29 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00136 * 2 1 4 4 H 1.08003 * 120.00403 * 201.69386 * 3 2 1 5 5 C 1.38815 * 120.00130 * 21.70303 * 3 2 1 6 6 N 1.31620 * 119.99577 * 14.32263 * 5 3 2 7 7 Si 1.86791 * 120.00044 * 194.32748 * 5 3 2 8 8 H 1.48496 * 109.47202 * 89.99714 * 7 5 3 9 9 H 1.48500 * 109.46974 * 209.99795 * 7 5 3 10 10 H 1.48500 * 109.47082 * 329.99428 * 7 5 3 11 11 C 1.46506 * 119.99879 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47012 * 89.99745 * 11 2 1 13 13 C 1.52995 * 109.54761 * 59.99942 * 12 11 2 14 14 C 1.53179 * 109.54117 * 299.82098 * 12 11 2 15 15 C 1.53105 * 109.15640 * 183.24341 * 14 12 11 16 16 O 1.42901 * 109.48720 * 57.47633 * 15 14 12 17 17 C 1.42906 * 114.09865 * 298.88909 * 16 15 14 18 18 C 1.53089 * 109.41371 * 61.15335 * 17 16 15 19 19 H 1.09005 * 109.46488 * 275.24856 * 1 2 3 20 20 H 1.09002 * 109.47098 * 35.23758 * 1 2 3 21 21 H 1.08992 * 109.47433 * 155.24486 * 1 2 3 22 22 H 0.97003 * 119.99875 * 180.02562 * 6 5 3 23 23 H 1.08994 * 109.46809 * 209.99222 * 11 2 1 24 24 H 1.08994 * 109.46666 * 329.99641 * 11 2 1 25 25 H 1.08999 * 109.47220 * 59.99554 * 13 12 11 26 26 H 1.08996 * 109.47798 * 180.02562 * 13 12 11 27 27 H 1.09009 * 109.47370 * 300.00189 * 13 12 11 28 28 H 1.08998 * 109.52778 * 303.06056 * 14 12 11 29 29 H 1.08997 * 109.52134 * 63.25346 * 14 12 11 30 30 H 1.09002 * 109.40856 * 297.49533 * 15 14 12 31 31 H 1.09001 * 109.49498 * 177.51249 * 15 14 12 32 32 H 1.09005 * 109.47814 * 301.17623 * 17 16 15 33 33 H 1.09001 * 109.49433 * 181.14822 * 17 16 15 34 34 H 1.09007 * 109.52431 * 182.48584 * 18 17 16 35 35 H 1.09007 * 109.56972 * 62.33543 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1723 1.2191 -0.3457 5 6 1.5295 2.3455 0.4446 6 7 0.4032 2.2713 1.1215 7 14 2.2933 4.0111 0.0819 8 1 1.7719 4.5239 -1.2105 9 1 1.9457 4.9621 1.1682 10 1 3.7694 3.8714 -0.0002 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.2792 -0.6444 -2.1658 14 6 1.1147 -1.8975 -2.1656 15 6 1.3770 -2.4162 -3.5820 16 8 2.1155 -3.6377 -3.5132 17 6 3.3956 -3.5113 -2.8906 18 6 3.2143 -3.0386 -1.4459 19 1 -0.3632 0.0940 1.0234 20 1 -0.3633 0.8394 -0.5929 21 1 -0.3634 -0.9331 -0.4303 22 1 -0.0305 3.0816 1.4319 23 1 3.1499 -1.1386 0.5132 24 1 1.6084 -2.0285 0.5130 25 1 4.2320 -0.5140 -1.6526 26 1 3.4597 -0.9595 -3.1935 27 1 2.7346 0.2999 -2.1661 28 1 0.5051 -2.6191 -1.6219 29 1 0.5915 -0.9427 -2.2171 30 1 1.9510 -1.6753 -4.1386 31 1 0.4271 -2.5937 -4.0862 32 1 3.9960 -2.7847 -3.4381 33 1 3.8999 -4.4776 -2.8964 34 1 4.1913 -2.8992 -0.9828 35 1 2.6490 -3.7838 -0.8861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307519725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:55 Heat of formation + Delta-G solvation = -33.931862 kcal Electronic energy + Delta-G solvation = -15484.186408 eV Core-core repulsion = 13096.683424 eV Total energy + Delta-G solvation = -2387.502984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54689 -36.22552 -33.67827 -30.96595 -30.54711 -27.61365 -26.34935 -25.61967 -23.15916 -22.94722 -20.53195 -18.10383 -16.67168 -15.75530 -15.65848 -14.87607 -14.56671 -14.10551 -13.77648 -13.35956 -13.19857 -12.56950 -12.14464 -11.71027 -11.44196 -11.20455 -10.89895 -10.86953 -10.82678 -10.58123 -10.56404 -10.31929 -9.97556 -9.77895 -9.63301 -9.54884 -9.06986 -8.46859 -6.66785 -5.67208 -3.11694 3.39295 3.45974 3.46997 4.15689 4.53028 5.10117 5.22909 5.32432 5.41323 5.49747 5.52416 5.67268 5.76441 5.84884 5.94549 6.11577 6.12530 6.25419 6.33095 6.45719 6.54649 6.66102 6.73240 6.82190 6.86233 6.98268 7.19337 7.41522 7.47997 7.77938 7.85830 8.44562 9.29230 9.94046 10.43375 11.37303 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046649 B = 0.009012 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.085427 B = 3106.309777 C = 3263.283953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.248 4.248 4 H 0.071 0.929 5 C -0.002 4.002 6 N -0.908 5.908 7 Si 0.899 3.101 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.163 3.837 12 C -0.082 4.082 13 C -0.136 4.136 14 C -0.135 4.135 15 C 0.059 3.941 16 O -0.391 6.391 17 C 0.062 3.938 18 C -0.144 4.144 19 H 0.027 0.973 20 H 0.038 0.962 21 H 0.002 0.998 22 H 0.251 0.749 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.581 -8.681 -6.795 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.377 4.377 4 H 0.089 0.911 5 C -0.200 4.200 6 N -0.554 5.554 7 Si 0.730 3.270 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.206 1.206 11 C 0.035 3.965 12 C -0.085 4.085 13 C -0.193 4.193 14 C -0.173 4.173 15 C -0.018 4.018 16 O -0.310 6.310 17 C -0.015 4.015 18 C -0.182 4.182 19 H 0.045 0.955 20 H 0.057 0.943 21 H 0.020 0.980 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.392 -8.700 -6.767 11.532 hybrid contribution 0.446 1.284 0.018 1.359 sum 3.838 -7.416 -6.749 10.737 Atomic orbital electron populations 1.20850 0.82855 0.95393 0.99284 1.43842 1.01657 1.00594 1.85964 1.19238 0.97525 0.85269 1.35695 0.91137 1.24990 0.98042 0.98321 0.98638 1.70090 1.19480 1.26750 1.39049 0.86323 0.78680 0.84550 0.77442 1.21651 1.21888 1.20576 1.20740 0.95843 0.88309 0.91570 1.21270 0.94221 0.93261 0.99783 1.21939 0.99502 1.00500 0.97398 1.22194 0.98040 1.01979 0.95037 1.22664 0.95560 0.86200 0.97354 1.87842 1.30365 1.32796 1.80001 1.22545 0.85140 1.00728 0.93042 1.22202 1.00982 0.98152 0.96860 0.95510 0.94295 0.97969 0.93919 0.93691 0.94866 0.93710 0.94830 0.90000 0.92235 0.89701 0.93331 0.89789 0.93331 0.89882 0.91444 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 7.77 59.85 0.46 4.39 16 2 N -0.60 -14.64 2.45 -181.12 -0.44 -15.08 16 3 C -0.25 -6.62 7.99 -15.06 -0.12 -6.74 16 4 H 0.07 1.85 6.86 -52.48 -0.36 1.48 16 5 C 0.00 -0.06 5.08 -17.43 -0.09 -0.14 16 6 N -0.91 -26.56 10.71 55.49 0.59 -25.96 16 7 Si 0.90 21.85 29.58 -169.99 -5.03 16.83 16 8 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.16 3.34 4.77 -4.04 -0.02 3.32 16 12 C -0.08 -1.42 0.59 -154.33 -0.09 -1.52 16 13 C -0.14 -2.41 6.90 37.16 0.26 -2.15 16 14 C -0.13 -2.28 3.59 -26.58 -0.10 -2.38 16 15 C 0.06 0.88 6.57 37.21 0.24 1.12 16 16 O -0.39 -6.09 10.77 -35.23 -0.38 -6.47 16 17 C 0.06 0.85 6.57 37.20 0.24 1.09 16 18 C -0.14 -2.10 4.92 -26.60 -0.13 -2.23 16 19 H 0.03 0.72 7.36 -51.93 -0.38 0.34 16 20 H 0.04 1.02 7.30 -51.93 -0.38 0.64 16 21 H 0.00 0.04 6.26 -51.93 -0.33 -0.29 16 22 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 23 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 24 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.03 0.52 5.02 -51.93 -0.26 0.26 16 27 H 0.08 1.69 6.14 -51.92 -0.32 1.37 16 28 H 0.06 1.02 7.96 -51.93 -0.41 0.60 16 29 H 0.08 1.60 6.37 -51.93 -0.33 1.27 16 30 H 0.05 0.72 6.61 -51.93 -0.34 0.37 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.64 6.60 -51.93 -0.34 0.30 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 261.18 15.07 3.94 3.94 Total: -1.00 -28.94 261.18 -6.20 -35.14 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.54 Total: -3.15 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 0.66 Total: -5.24 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.15 Total: -41.05 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.38 Total: -6.47 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.94 -6.20 -35.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307519725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.210 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds