Wall clock time and date at job start Sun Mar 29 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36938 * 120.00136 * 2 1 4 4 H 1.08003 * 120.00403 * 201.69386 * 3 2 1 5 5 C 1.38815 * 120.00130 * 21.70303 * 3 2 1 6 6 N 1.31620 * 119.99577 * 14.32263 * 5 3 2 7 7 Si 1.86791 * 120.00044 * 194.32748 * 5 3 2 8 8 H 1.48496 * 109.47202 * 89.99714 * 7 5 3 9 9 H 1.48500 * 109.46974 * 209.99795 * 7 5 3 10 10 H 1.48500 * 109.47082 * 329.99428 * 7 5 3 11 11 C 1.46506 * 119.99879 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47012 * 89.99745 * 11 2 1 13 13 C 1.52995 * 109.54761 * 59.99942 * 12 11 2 14 14 C 1.53179 * 109.54117 * 299.82098 * 12 11 2 15 15 C 1.53105 * 109.15640 * 183.24341 * 14 12 11 16 16 O 1.42901 * 109.48720 * 57.47633 * 15 14 12 17 17 C 1.42906 * 114.09865 * 298.88909 * 16 15 14 18 18 C 1.53089 * 109.41371 * 61.15335 * 17 16 15 19 19 H 1.09005 * 109.46488 * 275.24856 * 1 2 3 20 20 H 1.09002 * 109.47098 * 35.23758 * 1 2 3 21 21 H 1.08992 * 109.47433 * 155.24486 * 1 2 3 22 22 H 0.97003 * 119.99875 * 180.02562 * 6 5 3 23 23 H 1.08994 * 109.46809 * 209.99222 * 11 2 1 24 24 H 1.08994 * 109.46666 * 329.99641 * 11 2 1 25 25 H 1.08999 * 109.47220 * 59.99554 * 13 12 11 26 26 H 1.08996 * 109.47798 * 180.02562 * 13 12 11 27 27 H 1.09009 * 109.47370 * 300.00189 * 13 12 11 28 28 H 1.08998 * 109.52778 * 303.06056 * 14 12 11 29 29 H 1.08997 * 109.52134 * 63.25346 * 14 12 11 30 30 H 1.09002 * 109.40856 * 297.49533 * 15 14 12 31 31 H 1.09001 * 109.49498 * 177.51249 * 15 14 12 32 32 H 1.09005 * 109.47814 * 301.17623 * 17 16 15 33 33 H 1.09001 * 109.49433 * 181.14822 * 17 16 15 34 34 H 1.09007 * 109.52431 * 182.48584 * 18 17 16 35 35 H 1.09007 * 109.56972 * 62.33543 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1723 1.2191 -0.3457 5 6 1.5295 2.3455 0.4446 6 7 0.4032 2.2713 1.1215 7 14 2.2933 4.0111 0.0819 8 1 1.7719 4.5239 -1.2105 9 1 1.9457 4.9621 1.1682 10 1 3.7694 3.8714 -0.0002 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.2792 -0.6444 -2.1658 14 6 1.1147 -1.8975 -2.1656 15 6 1.3770 -2.4162 -3.5820 16 8 2.1155 -3.6377 -3.5132 17 6 3.3956 -3.5113 -2.8906 18 6 3.2143 -3.0386 -1.4459 19 1 -0.3632 0.0940 1.0234 20 1 -0.3633 0.8394 -0.5929 21 1 -0.3634 -0.9331 -0.4303 22 1 -0.0305 3.0816 1.4319 23 1 3.1499 -1.1386 0.5132 24 1 1.6084 -2.0285 0.5130 25 1 4.2320 -0.5140 -1.6526 26 1 3.4597 -0.9595 -3.1935 27 1 2.7346 0.2999 -2.1661 28 1 0.5051 -2.6191 -1.6219 29 1 0.5915 -0.9427 -2.2171 30 1 1.9510 -1.6753 -4.1386 31 1 0.4271 -2.5937 -4.0862 32 1 3.9960 -2.7847 -3.4381 33 1 3.8999 -4.4776 -2.8964 34 1 4.1913 -2.8992 -0.9828 35 1 2.6490 -3.7838 -0.8861 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307519725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:55 Heat of formation + Delta-G solvation = -51.522752 kcal Electronic energy + Delta-G solvation = -15484.949206 eV Core-core repulsion = 13096.683424 eV Total energy + Delta-G solvation = -2388.265782 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.84727 -37.84502 -35.34693 -32.76160 -31.91157 -29.10973 -28.03806 -27.51433 -24.52442 -24.37116 -22.27014 -19.45253 -18.68485 -17.01555 -16.94852 -16.70380 -15.81737 -15.63002 -15.38128 -15.07284 -14.75768 -14.27076 -13.68504 -13.30835 -12.85585 -12.84944 -12.73920 -12.52599 -12.35276 -12.30623 -12.08286 -11.93027 -11.77309 -11.56741 -11.04672 -10.99616 -10.61766 -10.26796 -8.68865 -7.77128 -5.23184 1.45890 1.47146 1.55125 2.53243 3.05144 3.34497 3.68211 3.90443 4.01650 4.11763 4.23565 4.37378 4.47475 4.53412 4.77336 4.81431 4.85774 4.90023 4.94600 4.98117 5.02991 5.11860 5.25053 5.25744 5.35096 5.41110 5.56542 5.67945 5.73427 5.77479 6.33917 6.37508 7.20337 7.93883 8.38288 9.25867 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046649 B = 0.009012 C = 0.008578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.085427 B = 3106.309777 C = 3263.283953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.610 5.610 3 C -0.241 4.241 4 H 0.076 0.924 5 C -0.061 4.061 6 N -0.943 5.943 7 Si 0.960 3.040 8 H -0.289 1.289 9 H -0.299 1.299 10 H -0.268 1.268 11 C 0.160 3.840 12 C -0.078 4.078 13 C -0.129 4.129 14 C -0.132 4.132 15 C 0.064 3.936 16 O -0.400 6.400 17 C 0.060 3.940 18 C -0.138 4.138 19 H -0.004 1.004 20 H 0.012 0.988 21 H 0.032 0.968 22 H 0.244 0.756 23 H 0.040 0.960 24 H 0.038 0.962 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.975 -9.926 -8.057 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.333 5.333 3 C -0.372 4.372 4 H 0.093 0.907 5 C -0.255 4.255 6 N -0.591 5.591 7 Si 0.790 3.210 8 H -0.216 1.216 9 H -0.226 1.226 10 H -0.192 1.192 11 C 0.034 3.966 12 C -0.080 4.080 13 C -0.186 4.186 14 C -0.170 4.170 15 C -0.012 4.012 16 O -0.319 6.319 17 C -0.016 4.016 18 C -0.176 4.176 19 H 0.015 0.985 20 H 0.031 0.969 21 H 0.051 0.949 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.820 -9.979 -8.047 13.695 hybrid contribution 0.042 1.583 0.413 1.636 sum 4.862 -8.396 -7.634 12.346 Atomic orbital electron populations 1.20552 0.83164 0.95753 0.97103 1.44039 1.01758 1.01559 1.85949 1.19537 0.97640 0.86139 1.33846 0.90672 1.25719 0.98888 1.01556 0.99360 1.70256 1.21037 1.26957 1.40846 0.85350 0.78484 0.80524 0.76683 1.21625 1.22641 1.19245 1.20921 0.95076 0.86668 0.93939 1.21116 0.94993 0.94775 0.97127 1.21827 0.98932 0.98955 0.98871 1.22114 0.97470 1.00739 0.96633 1.22627 0.96538 0.86245 0.95822 1.87847 1.31160 1.32823 1.80116 1.22709 0.84604 1.02430 0.91848 1.22156 1.01135 0.96173 0.98145 0.98549 0.96896 0.94938 0.94647 0.94194 0.94390 0.93609 0.92624 0.93352 0.92471 0.92108 0.92978 0.88227 0.92679 0.87253 0.90157 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.91 7.77 127.77 0.99 9.91 16 2 N -0.61 -29.98 2.45 -726.94 -1.78 -31.77 16 3 C -0.24 -12.93 7.99 84.03 0.67 -12.26 16 4 H 0.08 3.90 6.86 -2.91 -0.02 3.88 16 5 C -0.06 -3.43 5.08 84.86 0.43 -3.00 16 6 N -0.94 -56.57 10.71 21.65 0.23 -56.34 16 7 Si 0.96 45.39 29.58 68.60 2.03 47.42 16 8 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 9 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 C 0.16 6.40 4.77 86.38 0.41 6.81 16 12 C -0.08 -2.53 0.59 -52.06 -0.03 -2.56 16 13 C -0.13 -4.31 6.90 71.98 0.50 -3.81 16 14 C -0.13 -4.25 3.59 30.69 0.11 -4.13 16 15 C 0.06 1.75 6.57 72.02 0.47 2.22 16 16 O -0.40 -11.09 10.77 -148.98 -1.60 -12.69 16 17 C 0.06 1.41 6.57 72.01 0.47 1.88 16 18 C -0.14 -3.59 4.92 30.68 0.15 -3.44 16 19 H 0.00 -0.21 7.36 -2.38 -0.02 -0.23 16 20 H 0.01 0.67 7.30 -2.39 -0.02 0.65 16 21 H 0.03 1.38 6.26 -2.39 -0.01 1.36 16 22 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 23 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 24 H 0.04 1.47 8.07 -2.39 -0.02 1.45 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.60 5.02 -2.39 -0.01 1.59 16 27 H 0.05 1.95 6.14 -2.38 -0.01 1.93 16 28 H 0.06 1.85 7.96 -2.39 -0.02 1.83 16 29 H 0.06 2.26 6.37 -2.39 -0.02 2.24 16 30 H 0.05 1.39 6.61 -2.39 -0.02 1.37 16 31 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 1.23 6.60 -2.38 -0.02 1.22 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -61.70 261.18 4.11 -57.60 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.05 Total: 4.17 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.18 Total: -8.39 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -1.55 Total: -88.11 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -1.60 Total: -12.69 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -61.70 4.11 -57.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307519725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.072 kcal (2) G-P(sol) polarization free energy of solvation -61.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds