Wall clock time and date at job start Sun Mar 29 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37103 * 120.00204 * 2 1 4 4 H 1.07997 * 119.99725 * 145.83955 * 3 2 1 5 5 C 1.38948 * 119.99862 * 325.84291 * 3 2 1 6 6 N 1.31411 * 120.00141 * 350.25444 * 5 3 2 7 7 Si 1.86805 * 119.99942 * 170.25456 * 5 3 2 8 8 H 1.48496 * 109.47053 * 59.99814 * 7 5 3 9 9 H 1.48492 * 109.47090 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46653 * 300.00126 * 7 5 3 11 11 C 1.34784 * 119.99884 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99706 * 183.64799 * 11 2 1 13 13 C 1.50692 * 120.00006 * 3.64800 * 11 2 1 14 14 O 1.42905 * 110.02025 * 41.66078 * 13 11 2 15 15 C 1.54260 * 110.03114 * 280.27114 * 13 11 2 16 16 C 1.54965 * 104.16150 * 217.13507 * 15 13 11 17 17 C 1.54889 * 102.77412 * 37.88730 * 16 15 13 18 18 C 1.53875 * 110.03106 * 163.05094 * 13 11 2 19 19 H 1.08994 * 109.47126 * 208.71171 * 1 2 3 20 20 H 1.08997 * 109.47163 * 328.71344 * 1 2 3 21 21 H 1.09000 * 109.47311 * 88.71205 * 1 2 3 22 22 H 0.97005 * 119.99924 * 179.97438 * 6 5 3 23 23 H 0.96695 * 113.99693 * 281.40518 * 14 13 11 24 24 H 1.08996 * 110.48894 * 335.78070 * 15 13 11 25 25 H 1.09001 * 110.49012 * 98.43060 * 15 13 11 26 26 H 1.08999 * 110.72149 * 279.57856 * 16 15 13 27 27 H 1.08997 * 110.92924 * 156.29188 * 16 15 13 28 28 H 1.09007 * 110.48924 * 203.40209 * 17 16 15 29 29 H 1.08997 * 110.48916 * 80.76587 * 17 16 15 30 30 H 1.08999 * 110.03489 * 238.56560 * 18 13 11 31 31 H 1.08997 * 110.03701 * 0.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0907 1.2679 0.5252 5 6 1.6355 2.2869 -0.6756 6 7 0.5981 2.1436 -1.4694 7 14 2.4180 3.9688 -0.4556 8 1 3.8376 3.9147 -0.8878 9 1 1.6880 4.9659 -1.2790 10 1 2.3507 4.3627 0.9747 11 6 2.1388 -1.1673 -0.0005 12 8 3.3499 -1.1683 0.0663 13 6 1.3876 -2.4709 -0.0841 14 8 0.3251 -2.3633 -1.0337 15 6 0.8221 -2.8447 1.3015 16 6 0.9709 -4.3857 1.3686 17 6 2.3280 -4.6298 0.6631 18 6 2.3445 -3.6055 -0.4903 19 1 -0.3633 -0.9013 0.4937 20 1 -0.3633 0.8782 0.5337 21 1 -0.3634 0.0231 -1.0274 22 1 0.2384 2.9113 -1.9408 23 1 -0.4556 -1.9008 -0.6995 24 1 1.4043 -2.3707 2.0917 25 1 -0.2271 -2.5585 1.3753 26 1 0.1609 -4.8753 0.8279 27 1 1.0059 -4.7289 2.4026 28 1 2.3772 -5.6460 0.2717 29 1 3.1538 -4.4443 1.3499 30 1 1.9979 -4.0746 -1.4111 31 1 3.3523 -3.2133 -0.6265 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307600710.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:28 Heat of formation + Delta-G solvation = -79.575727 kcal Electronic energy + Delta-G solvation = -15148.339112 eV Core-core repulsion = 12623.023767 eV Total energy + Delta-G solvation = -2525.315345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.72621 -36.76497 -35.15588 -34.05117 -31.49534 -28.47165 -27.77192 -26.34855 -24.48629 -21.02772 -20.70902 -18.77864 -17.11920 -16.46516 -15.81913 -15.16289 -14.94720 -14.27764 -13.79287 -13.49241 -13.02182 -12.47634 -12.03919 -11.93739 -11.47818 -11.29366 -11.12637 -10.97880 -10.79435 -10.71425 -10.51620 -10.38064 -10.35174 -10.14523 -10.06875 -8.98123 -8.12977 -7.51795 -6.28790 -3.95443 3.19971 3.25235 3.28880 3.77005 4.15522 4.76748 4.78756 4.87574 4.97719 5.13158 5.29645 5.63868 5.73259 5.85465 5.89869 5.94676 6.03131 6.09907 6.18484 6.30307 6.41223 6.60832 6.70851 6.78906 7.09147 7.57714 8.10021 8.22738 8.50102 9.18999 9.40450 9.97816 10.76014 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056238 B = 0.009333 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.764392 B = 2999.314755 C = 3198.263664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.440 5.440 3 C -0.313 4.313 4 H 0.092 0.908 5 C 0.036 3.964 6 N -0.879 5.879 7 Si 0.926 3.074 8 H -0.272 1.272 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.442 3.558 12 O -0.580 6.580 13 C 0.121 3.879 14 O -0.559 6.559 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.121 4.121 18 C -0.107 4.107 19 H 0.028 0.972 20 H 0.061 0.939 21 H 0.070 0.930 22 H 0.268 0.732 23 H 0.375 0.625 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -8.197 4.279 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.159 5.159 3 C -0.441 4.441 4 H 0.110 0.890 5 C -0.168 4.168 6 N -0.517 5.517 7 Si 0.752 3.248 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.199 1.199 11 C 0.229 3.771 12 O -0.464 6.464 13 C 0.077 3.923 14 O -0.369 6.369 15 C -0.185 4.185 16 C -0.157 4.157 17 C -0.158 4.158 18 C -0.145 4.145 19 H 0.046 0.954 20 H 0.080 0.920 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.228 0.772 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.851 -8.345 3.813 9.607 hybrid contribution -0.308 1.337 0.322 1.409 sum -3.159 -7.008 4.135 8.729 Atomic orbital electron populations 1.21737 0.82423 0.98336 1.01932 1.43372 1.04861 1.04714 1.62981 1.19474 1.06730 0.86503 1.31428 0.89017 1.25447 0.96697 1.00339 0.94346 1.69913 1.23999 1.31280 1.26556 0.86020 0.79359 0.81133 0.78276 1.19754 1.20918 1.19927 1.20740 0.88235 0.85530 0.82576 1.90482 1.14050 1.86765 1.55092 1.21958 0.87718 0.94287 0.88366 1.86592 1.27158 1.80902 1.42267 1.23120 1.00995 0.96863 0.97486 1.22479 0.97824 0.95270 1.00171 1.22348 0.97421 0.98527 0.97513 1.22086 1.00272 0.93691 0.98421 0.95411 0.92039 0.91170 0.92204 0.77224 0.90479 0.90893 0.91364 0.91692 0.91689 0.91429 0.90891 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.18 7.03 59.84 0.42 2.60 16 2 N -0.44 -11.55 2.97 -122.20 -0.36 -11.91 16 3 C -0.31 -8.95 9.03 -14.93 -0.13 -9.08 16 4 H 0.09 2.72 7.60 -52.49 -0.40 2.32 16 5 C 0.04 0.97 5.16 -17.47 -0.09 0.88 16 6 N -0.88 -24.03 11.29 55.50 0.63 -23.41 16 7 Si 0.93 21.12 29.56 -169.99 -5.03 16.10 16 8 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 C 0.44 11.27 6.50 -10.99 -0.07 11.20 16 12 O -0.58 -16.61 15.18 5.54 0.08 -16.52 16 13 C 0.12 2.41 0.96 -90.66 -0.09 2.33 16 14 O -0.56 -11.01 12.30 -35.23 -0.43 -11.45 16 15 C -0.15 -2.36 5.39 -25.03 -0.13 -2.50 16 16 C -0.12 -1.60 6.91 -24.70 -0.17 -1.77 16 17 C -0.12 -1.74 6.83 -25.07 -0.17 -1.91 16 18 C -0.11 -1.96 6.17 -25.61 -0.16 -2.12 16 19 H 0.03 0.49 3.79 -51.93 -0.20 0.29 16 20 H 0.06 1.38 7.73 -51.93 -0.40 0.98 16 21 H 0.07 1.62 6.92 -51.93 -0.36 1.26 16 22 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 23 H 0.38 6.38 5.06 45.56 0.23 6.61 16 24 H 0.08 1.33 7.85 -51.93 -0.41 0.92 16 25 H 0.07 1.03 6.62 -51.93 -0.34 0.69 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.28 7.95 -51.93 -0.41 0.86 16 31 H 0.09 1.93 6.55 -51.93 -0.34 1.59 16 LS Contribution 247.54 15.07 3.73 3.73 Total: -1.00 -32.12 247.54 -5.43 -37.55 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -3.46 Total: 6.29 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.60 Total: -0.38 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.26 Total: -35.32 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.35 Total: -27.97 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -32.12 -5.43 -37.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307600710.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.024 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds