Wall clock time and date at job start Sun Mar 29 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37103 * 120.00204 * 2 1 4 4 H 1.07997 * 119.99725 * 145.83955 * 3 2 1 5 5 C 1.38948 * 119.99862 * 325.84291 * 3 2 1 6 6 N 1.31411 * 120.00141 * 350.25444 * 5 3 2 7 7 Si 1.86805 * 119.99942 * 170.25456 * 5 3 2 8 8 H 1.48496 * 109.47053 * 59.99814 * 7 5 3 9 9 H 1.48492 * 109.47090 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46653 * 300.00126 * 7 5 3 11 11 C 1.34784 * 119.99884 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99706 * 183.64799 * 11 2 1 13 13 C 1.50692 * 120.00006 * 3.64800 * 11 2 1 14 14 O 1.42905 * 110.02025 * 41.66078 * 13 11 2 15 15 C 1.54260 * 110.03114 * 280.27114 * 13 11 2 16 16 C 1.54965 * 104.16150 * 217.13507 * 15 13 11 17 17 C 1.54889 * 102.77412 * 37.88730 * 16 15 13 18 18 C 1.53875 * 110.03106 * 163.05094 * 13 11 2 19 19 H 1.08994 * 109.47126 * 208.71171 * 1 2 3 20 20 H 1.08997 * 109.47163 * 328.71344 * 1 2 3 21 21 H 1.09000 * 109.47311 * 88.71205 * 1 2 3 22 22 H 0.97005 * 119.99924 * 179.97438 * 6 5 3 23 23 H 0.96695 * 113.99693 * 281.40518 * 14 13 11 24 24 H 1.08996 * 110.48894 * 335.78070 * 15 13 11 25 25 H 1.09001 * 110.49012 * 98.43060 * 15 13 11 26 26 H 1.08999 * 110.72149 * 279.57856 * 16 15 13 27 27 H 1.08997 * 110.92924 * 156.29188 * 16 15 13 28 28 H 1.09007 * 110.48924 * 203.40209 * 17 16 15 29 29 H 1.08997 * 110.48916 * 80.76587 * 17 16 15 30 30 H 1.08999 * 110.03489 * 238.56560 * 18 13 11 31 31 H 1.08997 * 110.03701 * 0.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.0907 1.2679 0.5252 5 6 1.6355 2.2869 -0.6756 6 7 0.5981 2.1436 -1.4694 7 14 2.4180 3.9688 -0.4556 8 1 3.8376 3.9147 -0.8878 9 1 1.6880 4.9659 -1.2790 10 1 2.3507 4.3627 0.9747 11 6 2.1388 -1.1673 -0.0005 12 8 3.3499 -1.1683 0.0663 13 6 1.3876 -2.4709 -0.0841 14 8 0.3251 -2.3633 -1.0337 15 6 0.8221 -2.8447 1.3015 16 6 0.9709 -4.3857 1.3686 17 6 2.3280 -4.6298 0.6631 18 6 2.3445 -3.6055 -0.4903 19 1 -0.3633 -0.9013 0.4937 20 1 -0.3633 0.8782 0.5337 21 1 -0.3634 0.0231 -1.0274 22 1 0.2384 2.9113 -1.9408 23 1 -0.4556 -1.9008 -0.6995 24 1 1.4043 -2.3707 2.0917 25 1 -0.2271 -2.5585 1.3753 26 1 0.1609 -4.8753 0.8279 27 1 1.0059 -4.7289 2.4026 28 1 2.3772 -5.6460 0.2717 29 1 3.1538 -4.4443 1.3499 30 1 1.9979 -4.0746 -1.4111 31 1 3.3523 -3.2133 -0.6265 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307600710.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:28 Heat of formation + Delta-G solvation = -103.130181 kcal Electronic energy + Delta-G solvation = -15149.360510 eV Core-core repulsion = 12623.023767 eV Total energy + Delta-G solvation = -2526.336742 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.42551 -38.48862 -37.01982 -35.67369 -33.56228 -29.79093 -29.29471 -28.23997 -26.40090 -22.74486 -21.93438 -20.40463 -19.12893 -18.27749 -17.31827 -16.95668 -16.63073 -15.96498 -15.67682 -15.17493 -14.53241 -14.00114 -13.77392 -13.43808 -13.26935 -13.19150 -12.82683 -12.54572 -12.44593 -12.23940 -12.16060 -11.94796 -11.87541 -11.58518 -11.41028 -11.03130 -10.05529 -9.57904 -8.36247 -6.12251 1.36502 1.37505 1.48670 1.88947 2.25444 2.94727 3.01652 3.34336 3.56825 3.60228 3.93134 4.18028 4.39180 4.48959 4.50569 4.61728 4.76119 4.82631 4.90372 5.05927 5.09855 5.18518 5.25461 5.32845 5.39779 5.46142 6.10971 6.44637 6.67566 7.11140 7.38644 7.95307 8.66535 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.056238 B = 0.009333 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.764392 B = 2999.314755 C = 3198.263664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.456 5.456 3 C -0.354 4.354 4 H 0.065 0.935 5 C 0.001 3.999 6 N -0.894 5.894 7 Si 0.990 3.010 8 H -0.279 1.279 9 H -0.268 1.268 10 H -0.263 1.263 11 C 0.424 3.576 12 O -0.626 6.626 13 C 0.123 3.877 14 O -0.564 6.564 15 C -0.144 4.144 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.112 4.112 19 H 0.073 0.927 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.274 0.726 23 H 0.385 0.615 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 -9.100 4.931 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.174 5.174 3 C -0.482 4.482 4 H 0.083 0.917 5 C -0.202 4.202 6 N -0.532 5.532 7 Si 0.813 3.187 8 H -0.205 1.205 9 H -0.192 1.192 10 H -0.187 1.187 11 C 0.213 3.787 12 O -0.514 6.514 13 C 0.079 3.921 14 O -0.376 6.376 15 C -0.182 4.182 16 C -0.145 4.145 17 C -0.152 4.152 18 C -0.150 4.150 19 H 0.091 0.909 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.084 0.916 23 H 0.239 0.761 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.393 -9.255 4.468 11.177 hybrid contribution 0.171 1.623 0.061 1.633 sum -4.222 -7.632 4.529 9.828 Atomic orbital electron populations 1.21728 0.80087 1.00134 1.01549 1.43683 1.06465 1.04482 1.62813 1.19491 1.06993 0.88544 1.33140 0.91669 1.26226 0.97050 1.03420 0.93474 1.69985 1.24371 1.32509 1.26301 0.85064 0.77972 0.76731 0.78945 1.20514 1.19221 1.18735 1.21911 0.88282 0.87338 0.81178 1.90434 1.16299 1.87821 1.56818 1.21981 0.87783 0.91380 0.90988 1.86594 1.27400 1.80798 1.42790 1.23126 1.01763 0.99328 0.94001 1.22488 0.97391 0.92641 1.02013 1.22358 0.98275 0.98675 0.95931 1.22135 0.97911 0.94232 1.00707 0.90917 0.93015 0.92423 0.91605 0.76070 0.91969 0.88420 0.89424 0.88936 0.88702 0.91948 0.90203 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.68 7.03 127.77 0.90 5.58 16 2 N -0.46 -24.43 2.97 -658.92 -1.96 -26.39 16 3 C -0.35 -20.86 9.03 84.04 0.76 -20.10 16 4 H 0.07 4.08 7.60 -2.91 -0.02 4.06 16 5 C 0.00 0.05 5.16 84.93 0.44 0.49 16 6 N -0.89 -48.84 11.29 21.66 0.24 -48.59 16 7 Si 0.99 43.46 29.56 68.60 2.03 45.49 16 8 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 9 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 C 0.42 22.17 6.50 87.65 0.57 22.74 16 12 O -0.63 -37.67 15.18 -3.08 -0.05 -37.72 16 13 C 0.12 4.80 0.96 -10.82 -0.01 4.79 16 14 O -0.56 -21.34 12.30 -148.98 -1.83 -23.17 16 15 C -0.14 -4.28 5.39 31.69 0.17 -4.11 16 16 C -0.11 -2.43 6.91 31.91 0.22 -2.21 16 17 C -0.11 -3.01 6.83 31.67 0.22 -2.79 16 18 C -0.11 -4.04 6.17 31.32 0.19 -3.85 16 19 H 0.07 2.43 3.79 -2.39 -0.01 2.42 16 20 H 0.05 2.31 7.73 -2.39 -0.02 2.29 16 21 H 0.06 2.64 6.92 -2.39 -0.02 2.63 16 22 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 23 H 0.39 12.22 5.06 -74.06 -0.37 11.85 16 24 H 0.06 2.05 7.85 -2.39 -0.02 2.03 16 25 H 0.10 2.38 6.62 -2.39 -0.02 2.37 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.71 7.95 -2.39 -0.02 2.69 16 31 H 0.06 2.52 6.55 -2.39 -0.02 2.51 16 Total: -1.00 -71.95 247.54 2.66 -69.30 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.76 Total: 20.55 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 3.46 Total: 0.53 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -1.71 Total: -74.98 kcal Atomic # 8 Polarization: -59.01 SS G_CDS: -1.88 Total: -60.89 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -71.95 2.66 -69.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307600710.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.834 kcal (2) G-P(sol) polarization free energy of solvation -71.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds