Wall clock time and date at job start Sun Mar 29 2020 21:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.51363 * 2 1 4 4 O 1.42960 * 109.51770 * 120.15393 * 2 1 3 5 5 C 1.42958 * 114.17032 * 182.50672 * 4 2 1 6 6 C 1.53716 * 109.14545 * 297.28448 * 5 4 2 7 7 N 1.47152 * 108.15722 * 52.54048 * 6 5 4 8 8 C 1.34778 * 120.98147 * 129.43496 * 7 6 5 9 9 O 1.21695 * 120.00290 * 185.12056 * 8 7 6 10 10 C 1.46381 * 120.00208 * 5.11307 * 8 7 6 11 11 H 1.07995 * 119.99273 * 355.00020 * 10 8 7 12 12 C 1.40047 * 119.99874 * 174.72068 * 10 8 7 13 13 N 1.30668 * 120.00436 * 0.27987 * 12 10 8 14 14 Si 1.86803 * 119.99739 * 180.27407 * 12 10 8 15 15 H 1.48507 * 109.46672 * 89.99965 * 14 12 10 16 16 H 1.48492 * 109.47183 * 210.00047 * 14 12 10 17 17 H 1.48496 * 109.47240 * 330.00677 * 14 12 10 18 18 C 1.47153 * 118.03624 * 309.15317 * 7 6 5 19 19 H 1.08994 * 109.68476 * 291.02697 * 18 7 6 20 20 C 1.53008 * 109.67929 * 170.51345 * 18 7 6 21 21 H 1.09006 * 109.46763 * 180.10407 * 1 2 3 22 22 H 1.08998 * 109.46953 * 300.09946 * 1 2 3 23 23 H 1.08994 * 109.47654 * 60.09858 * 1 2 3 24 24 H 1.08997 * 109.51673 * 57.34011 * 5 4 2 25 25 H 1.08997 * 109.51276 * 177.49427 * 5 4 2 26 26 H 1.08989 * 109.84221 * 292.85969 * 6 5 4 27 27 H 1.09002 * 109.74662 * 172.16517 * 6 5 4 28 28 H 0.96995 * 120.00467 * 180.02562 * 13 12 10 29 29 H 1.08995 * 109.47168 * 65.37564 * 20 18 7 30 30 H 1.08999 * 109.46449 * 185.37777 * 20 18 7 31 31 H 1.09000 * 109.46680 * 305.37223 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 8 2.0076 -0.6769 1.1651 5 6 3.4313 -0.6860 1.2944 6 6 4.0403 -1.4511 0.1084 7 7 3.5011 -0.8756 -1.1340 8 6 4.3192 -0.5032 -2.1383 9 8 3.8638 0.0557 -3.1187 10 6 5.7556 -0.7709 -2.0498 11 1 6.1715 -1.1930 -1.1469 12 6 6.5895 -0.4851 -3.1380 13 7 6.0863 0.0257 -4.2304 14 14 8.4214 -0.8338 -3.0278 15 1 8.6916 -2.2150 -3.5019 16 1 9.1615 0.1345 -3.8760 17 1 8.8671 -0.6985 -1.6178 18 6 2.0420 -0.7246 -1.2501 19 1 1.5758 -1.7072 -1.3223 20 6 1.7065 0.0976 -2.4961 21 1 -0.3633 -1.0277 0.0019 22 1 -0.3633 0.5154 0.8891 23 1 -0.3634 0.5123 -0.8908 24 1 3.8030 0.3386 1.2996 25 1 3.7091 -1.1796 2.2257 26 1 3.7719 -2.5055 0.1713 27 1 5.1252 -1.3466 0.1208 28 1 6.6637 0.2234 -4.9842 29 1 2.0033 -0.4555 -3.3871 30 1 0.6338 0.2884 -2.5273 31 1 2.2434 1.0456 -2.4611 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307673304.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:08 Heat of formation + Delta-G solvation = -92.157312 kcal Electronic energy + Delta-G solvation = -15100.753607 eV Core-core repulsion = 12574.892684 eV Total energy + Delta-G solvation = -2525.860923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.00498 -38.63835 -35.41697 -34.85641 -34.37889 -30.17193 -29.37811 -27.99271 -25.27882 -23.65985 -22.43545 -20.79703 -18.46788 -17.74123 -17.32498 -16.55563 -16.41022 -15.99787 -15.49802 -15.34644 -14.59501 -13.84976 -13.76785 -13.45990 -13.26401 -13.04502 -12.81346 -12.75349 -12.68344 -12.37431 -12.05179 -11.98822 -11.89590 -11.50438 -11.01744 -10.87843 -9.30409 -8.96859 -8.23220 -6.84077 1.38988 1.40013 1.54848 2.21351 2.45881 2.61660 2.88069 3.58544 3.75725 4.03893 4.10308 4.21777 4.30980 4.45715 4.49953 4.57951 4.71528 4.81125 4.94693 4.96434 5.02149 5.18813 5.32834 5.36588 5.55825 5.70850 6.10857 6.20815 6.36652 6.87886 7.40040 8.47521 8.66992 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046816 B = 0.009966 C = 0.008455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.946592 B = 2808.933127 C = 3310.969897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.081 3.919 3 H 0.043 0.957 4 O -0.388 6.388 5 C 0.053 3.947 6 C 0.083 3.917 7 N -0.651 5.651 8 C 0.540 3.460 9 O -0.608 6.608 10 C -0.572 4.572 11 H 0.090 0.910 12 C 0.031 3.969 13 N -0.820 5.820 14 Si 0.993 3.007 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.248 1.248 18 C 0.118 3.882 19 H 0.059 0.941 20 C -0.106 4.106 21 H 0.069 0.931 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.044 0.956 25 H 0.134 0.866 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.273 0.727 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.381 -2.010 9.884 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.023 3.977 3 H 0.061 0.939 4 O -0.307 6.307 5 C -0.025 4.025 6 C -0.041 4.041 7 N -0.389 5.389 8 C 0.346 3.654 9 O -0.494 6.494 10 C -0.608 4.608 11 H 0.108 0.892 12 C -0.184 4.184 13 N -0.450 5.450 14 Si 0.813 3.187 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.171 1.171 18 C 0.014 3.986 19 H 0.077 0.923 20 C -0.163 4.163 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.062 0.938 25 H 0.152 0.848 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.742 -1.724 9.312 10.591 hybrid contribution 1.063 0.017 -0.590 1.216 sum -3.679 -1.707 8.722 9.619 Atomic orbital electron populations 1.21762 0.90169 1.03639 1.03605 1.22538 0.96909 0.94022 0.84278 0.93879 1.87836 1.21892 1.77675 1.43340 1.23165 0.80421 0.99893 0.98989 1.22394 1.00511 0.97123 0.84044 1.48273 1.05130 1.67639 1.17896 1.18609 0.87677 0.78144 0.80991 1.90600 1.76980 1.47501 1.34328 1.21523 0.91424 1.45423 1.02441 0.89178 1.26923 1.05946 0.91837 0.93721 1.70166 1.38580 1.32266 1.03978 0.85081 0.75082 0.78714 0.79837 1.18760 1.19959 1.17122 1.21764 0.82103 0.98494 0.96279 0.92309 1.21786 0.98606 0.99617 0.96285 0.91180 0.90419 0.89780 0.93793 0.84815 0.91872 0.88708 0.91677 0.94288 0.91736 0.94679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.38 71.98 0.68 -2.68 16 2 C 0.08 2.74 2.85 30.69 0.09 2.82 16 3 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 4 O -0.39 -12.76 10.38 -148.98 -1.55 -14.31 16 5 C 0.05 1.61 7.00 72.22 0.51 2.12 16 6 C 0.08 3.07 6.53 86.50 0.57 3.64 16 7 N -0.65 -30.56 3.01 -797.74 -2.40 -32.96 16 8 C 0.54 31.25 7.54 86.36 0.65 31.90 16 9 O -0.61 -39.29 10.58 -4.33 -0.05 -39.34 16 10 C -0.57 -32.06 8.86 24.83 0.22 -31.84 16 11 H 0.09 4.51 5.76 -2.91 -0.02 4.50 16 12 C 0.03 1.70 5.50 85.30 0.47 2.17 16 13 N -0.82 -49.75 11.84 21.83 0.26 -49.49 16 14 Si 0.99 40.61 29.56 68.60 2.03 42.64 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 17 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 18 C 0.12 4.81 3.12 44.97 0.14 4.95 16 19 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 20 C -0.11 -4.62 7.51 71.98 0.54 -4.08 16 21 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 22 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.08 1.92 6.61 -2.39 -0.02 1.91 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.09 3.57 5.50 -2.39 -0.01 3.56 16 28 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16 29 H 0.04 1.98 6.67 -2.39 -0.02 1.97 16 30 H 0.06 2.21 6.53 -2.39 -0.02 2.19 16 31 H 0.03 1.73 6.90 -2.39 -0.02 1.72 16 Total: -1.00 -72.37 248.24 3.27 -69.11 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.12 Total: 15.37 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 3.85 Total: 8.99 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -2.15 Total: -82.45 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -1.59 Total: -53.65 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -72.37 3.27 -69.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307673304.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.049 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds