Wall clock time and date at job start Sun Mar 29 2020 21:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.55024 * 2 1 4 4 O 1.42961 * 109.51377 * 239.87292 * 2 1 3 5 5 C 1.42965 * 114.16870 * 177.49121 * 4 2 1 6 6 C 1.53300 * 109.22039 * 62.58217 * 5 4 2 7 7 N 1.47148 * 108.38225 * 307.69858 * 6 5 4 8 8 C 1.34781 * 120.97928 * 230.51196 * 7 6 5 9 9 O 1.21689 * 119.99776 * 175.12506 * 8 7 6 10 10 C 1.46371 * 120.00081 * 355.12967 * 8 7 6 11 11 H 1.07999 * 119.99884 * 6.65960 * 10 8 7 12 12 C 1.40047 * 120.00156 * 186.65976 * 10 8 7 13 13 N 1.30680 * 119.99822 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00178 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47510 * 59.99551 * 14 12 10 16 16 H 1.48502 * 109.47039 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46575 * 299.99359 * 14 12 10 18 18 C 1.47147 * 118.03833 * 50.53597 * 7 6 5 19 19 H 1.09002 * 109.68559 * 69.19173 * 18 7 6 20 20 C 1.53007 * 109.68155 * 189.70281 * 18 7 6 21 21 H 1.09006 * 109.47114 * 180.13131 * 1 2 3 22 22 H 1.09003 * 109.46916 * 300.12279 * 1 2 3 23 23 H 1.08995 * 109.47724 * 60.12869 * 1 2 3 24 24 H 1.09002 * 109.51383 * 182.50636 * 5 4 2 25 25 H 1.08994 * 109.51403 * 302.60724 * 5 4 2 26 26 H 1.08995 * 109.68067 * 67.41855 * 6 5 4 27 27 H 1.08993 * 109.67679 * 187.97557 * 6 5 4 28 28 H 0.97000 * 119.99963 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.46989 * 53.55025 * 20 18 7 30 30 H 1.09006 * 109.46900 * 173.54431 * 20 18 7 31 31 H 1.08996 * 109.47051 * 293.54365 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 8 2.0075 -0.6763 -1.1655 5 6 3.4313 -0.6854 -1.2948 6 6 4.0407 -1.4457 -0.1114 7 7 3.5012 -0.8761 1.1335 8 6 4.3194 -0.5041 2.1379 9 8 3.8627 0.0461 3.1225 10 6 5.7572 -0.7618 2.0442 11 1 6.1775 -1.1508 1.1286 12 6 6.5878 -0.5039 3.1419 13 7 6.0792 -0.0326 4.2496 14 14 8.4228 -0.8321 3.0222 15 1 9.0030 -0.0078 1.9318 16 1 9.0737 -0.4798 4.3096 17 1 8.6503 -2.2702 2.7303 18 6 2.0421 -0.7252 1.2497 19 1 1.5758 -1.7079 1.3209 20 6 1.7066 0.0957 2.4966 21 1 -0.3634 -1.0277 0.0024 22 1 -0.3633 0.5158 0.8889 23 1 -0.3634 0.5118 -0.8911 24 1 3.7091 -1.1785 -2.2264 25 1 3.8029 0.3392 -1.3005 26 1 3.7757 -2.5009 -0.1773 27 1 5.1252 -1.3375 -0.1249 28 1 6.6545 0.1464 5.0098 29 1 2.2583 1.0355 2.4721 30 1 0.6367 0.3029 2.5181 31 1 1.9858 -0.4665 3.3876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307673314.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:16 Heat of formation + Delta-G solvation = -69.136692 kcal Electronic energy + Delta-G solvation = -15099.876369 eV Core-core repulsion = 12575.013695 eV Total energy + Delta-G solvation = -2524.862674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.37534 -36.80887 -33.66044 -33.20477 -32.39722 -28.62772 -27.82266 -25.98399 -23.68426 -22.12401 -20.77270 -18.96674 -16.63848 -16.00971 -15.59459 -14.91994 -14.76613 -14.34310 -13.93248 -13.67539 -12.72228 -12.44906 -12.27436 -11.82089 -11.53734 -11.24356 -11.21143 -11.15067 -10.97300 -10.79628 -10.38485 -10.29234 -10.11979 -9.98288 -9.44302 -8.87216 -7.22418 -7.13165 -6.18133 -4.68731 3.12242 3.17616 3.18889 4.00808 4.12400 4.44111 4.52215 5.20285 5.45068 5.51827 5.55982 5.66728 5.78518 5.87295 5.92849 6.01605 6.11228 6.23930 6.32774 6.35809 6.50433 6.55388 7.02626 7.33996 7.40337 7.54080 7.62332 8.09606 8.30283 8.98104 9.38879 10.53406 10.71851 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046815 B = 0.009968 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.958246 B = 2808.301682 C = 3312.043368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 H 0.057 0.943 4 O -0.389 6.389 5 C 0.048 3.952 6 C 0.089 3.911 7 N -0.643 5.643 8 C 0.560 3.440 9 O -0.566 6.566 10 C -0.546 4.546 11 H 0.071 0.929 12 C 0.089 3.911 13 N -0.768 5.768 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.268 1.268 18 C 0.125 3.875 19 H 0.052 0.948 20 C -0.121 4.121 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.269 0.731 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 -1.167 -7.864 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.017 3.983 3 H 0.075 0.925 4 O -0.308 6.308 5 C -0.030 4.030 6 C -0.036 4.036 7 N -0.383 5.383 8 C 0.366 3.634 9 O -0.449 6.449 10 C -0.583 4.583 11 H 0.089 0.911 12 C -0.131 4.131 13 N -0.396 5.396 14 Si 0.731 3.269 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.193 1.193 18 C 0.020 3.980 19 H 0.070 0.930 20 C -0.178 4.178 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.077 0.923 24 H 0.111 0.889 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.886 -0.877 -7.222 8.764 hybrid contribution 1.201 -0.183 -0.048 1.215 sum -3.686 -1.059 -7.270 8.220 Atomic orbital electron populations 1.21761 0.93364 1.02576 1.02124 1.22576 0.94536 0.95420 0.85817 0.92540 1.87822 1.21361 1.77878 1.43743 1.22999 0.81150 1.00201 0.98656 1.22075 1.00507 0.96268 0.84741 1.48340 1.04093 1.68480 1.17344 1.18193 0.86601 0.78055 0.80523 1.90619 1.76052 1.46083 1.32134 1.20960 0.90821 1.46474 1.00015 0.91148 1.25706 1.00002 0.92778 0.94638 1.69990 1.36196 1.31395 1.02047 0.86451 0.82798 0.79491 0.78144 1.19268 1.20519 1.19276 1.21542 0.83424 0.97930 0.95080 0.93012 1.22082 0.96633 1.01938 0.97173 0.92070 0.90774 0.92325 0.88944 0.93208 0.93186 0.88258 0.92004 0.91199 0.95981 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.38 37.16 0.35 -1.63 16 2 C 0.08 1.33 2.85 -26.58 -0.08 1.25 16 3 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 4 O -0.39 -6.93 10.38 -35.23 -0.37 -7.30 16 5 C 0.05 0.79 6.99 37.31 0.26 1.05 16 6 C 0.09 1.71 6.51 -3.53 -0.02 1.68 16 7 N -0.64 -14.98 3.02 -166.40 -0.50 -15.48 16 8 C 0.56 15.70 7.53 -12.99 -0.10 15.60 16 9 O -0.57 -17.39 10.60 5.20 0.06 -17.34 16 10 C -0.55 -15.10 8.86 -35.63 -0.32 -15.41 16 11 H 0.07 1.77 5.75 -52.49 -0.30 1.47 16 12 C 0.09 2.43 5.50 -17.36 -0.10 2.33 16 13 N -0.77 -22.54 11.85 55.55 0.66 -21.88 16 14 Si 0.91 19.82 29.56 -169.99 -5.02 14.80 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 18 C 0.13 2.57 3.12 -67.42 -0.21 2.36 16 19 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.12 -2.59 7.53 37.16 0.28 -2.31 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.96 6.61 -51.93 -0.34 0.62 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.92 5.49 -51.93 -0.29 1.64 16 28 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 29 H 0.07 1.67 6.84 -51.93 -0.36 1.32 16 30 H 0.02 0.38 6.50 -51.93 -0.34 0.04 16 31 H 0.08 1.88 6.74 -51.93 -0.35 1.53 16 LS Contribution 248.18 15.07 3.74 3.74 Total: -1.00 -32.12 248.18 -5.43 -37.55 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.06 Total: 0.97 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 0.07 Total: 4.94 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.16 Total: -37.36 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.31 Total: -24.64 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.12 -5.43 -37.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307673314.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.583 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds