Wall clock time and date at job start Sun Mar 29 2020 21:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.55024 * 2 1 4 4 O 1.42961 * 109.51377 * 239.87292 * 2 1 3 5 5 C 1.42965 * 114.16870 * 177.49121 * 4 2 1 6 6 C 1.53300 * 109.22039 * 62.58217 * 5 4 2 7 7 N 1.47148 * 108.38225 * 307.69858 * 6 5 4 8 8 C 1.34781 * 120.97928 * 230.51196 * 7 6 5 9 9 O 1.21689 * 119.99776 * 175.12506 * 8 7 6 10 10 C 1.46371 * 120.00081 * 355.12967 * 8 7 6 11 11 H 1.07999 * 119.99884 * 6.65960 * 10 8 7 12 12 C 1.40047 * 120.00156 * 186.65976 * 10 8 7 13 13 N 1.30680 * 119.99822 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00178 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47510 * 59.99551 * 14 12 10 16 16 H 1.48502 * 109.47039 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46575 * 299.99359 * 14 12 10 18 18 C 1.47147 * 118.03833 * 50.53597 * 7 6 5 19 19 H 1.09002 * 109.68559 * 69.19173 * 18 7 6 20 20 C 1.53007 * 109.68155 * 189.70281 * 18 7 6 21 21 H 1.09006 * 109.47114 * 180.13131 * 1 2 3 22 22 H 1.09003 * 109.46916 * 300.12279 * 1 2 3 23 23 H 1.08995 * 109.47724 * 60.12869 * 1 2 3 24 24 H 1.09002 * 109.51383 * 182.50636 * 5 4 2 25 25 H 1.08994 * 109.51403 * 302.60724 * 5 4 2 26 26 H 1.08995 * 109.68067 * 67.41855 * 6 5 4 27 27 H 1.08993 * 109.67679 * 187.97557 * 6 5 4 28 28 H 0.97000 * 119.99963 * 180.02562 * 13 12 10 29 29 H 1.08998 * 109.46989 * 53.55025 * 20 18 7 30 30 H 1.09006 * 109.46900 * 173.54431 * 20 18 7 31 31 H 1.08996 * 109.47051 * 293.54365 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 8 2.0075 -0.6763 -1.1655 5 6 3.4313 -0.6854 -1.2948 6 6 4.0407 -1.4457 -0.1114 7 7 3.5012 -0.8761 1.1335 8 6 4.3194 -0.5041 2.1379 9 8 3.8627 0.0461 3.1225 10 6 5.7572 -0.7618 2.0442 11 1 6.1775 -1.1508 1.1286 12 6 6.5878 -0.5039 3.1419 13 7 6.0792 -0.0326 4.2496 14 14 8.4228 -0.8321 3.0222 15 1 9.0030 -0.0078 1.9318 16 1 9.0737 -0.4798 4.3096 17 1 8.6503 -2.2702 2.7303 18 6 2.0421 -0.7252 1.2497 19 1 1.5758 -1.7079 1.3209 20 6 1.7066 0.0957 2.4966 21 1 -0.3634 -1.0277 0.0024 22 1 -0.3633 0.5158 0.8889 23 1 -0.3634 0.5118 -0.8911 24 1 3.7091 -1.1785 -2.2264 25 1 3.8029 0.3392 -1.3005 26 1 3.7757 -2.5009 -0.1773 27 1 5.1252 -1.3375 -0.1249 28 1 6.6545 0.1464 5.0098 29 1 2.2583 1.0355 2.4721 30 1 0.6367 0.3029 2.5181 31 1 1.9858 -0.4665 3.3876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307673314.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:16 Heat of formation + Delta-G solvation = -92.184339 kcal Electronic energy + Delta-G solvation = -15100.875790 eV Core-core repulsion = 12575.013695 eV Total energy + Delta-G solvation = -2525.862095 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.01407 -38.64240 -35.41615 -34.86846 -34.38034 -30.17154 -29.40431 -27.99380 -25.28116 -23.65050 -22.43710 -20.79476 -18.47362 -17.74150 -17.32451 -16.55528 -16.41737 -16.00280 -15.50328 -15.34732 -14.58750 -13.85122 -13.77907 -13.46007 -13.26068 -13.05454 -12.80113 -12.75297 -12.67147 -12.37990 -12.06808 -11.99946 -11.90202 -11.50204 -11.01310 -10.86913 -9.30393 -8.97368 -8.23465 -6.83966 1.38905 1.41821 1.53103 2.21418 2.45908 2.61388 2.88003 3.58346 3.75676 4.03939 4.10669 4.22295 4.30535 4.45742 4.49806 4.57758 4.71394 4.80838 4.94703 4.96437 5.02039 5.18925 5.32773 5.36537 5.55650 5.70781 6.10719 6.20675 6.36464 6.87832 7.39869 8.47404 8.66836 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046815 B = 0.009968 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.958246 B = 2808.301682 C = 3312.043368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.081 3.919 3 H 0.043 0.957 4 O -0.388 6.388 5 C 0.052 3.948 6 C 0.082 3.918 7 N -0.651 5.651 8 C 0.540 3.460 9 O -0.608 6.608 10 C -0.573 4.573 11 H 0.090 0.910 12 C 0.031 3.969 13 N -0.821 5.821 14 Si 0.993 3.007 15 H -0.255 1.255 16 H -0.276 1.276 17 H -0.255 1.255 18 C 0.118 3.882 19 H 0.059 0.941 20 C -0.106 4.106 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.135 0.865 25 H 0.044 0.956 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.273 0.727 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 -1.879 -9.925 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.023 3.977 3 H 0.062 0.938 4 O -0.307 6.307 5 C -0.025 4.025 6 C -0.041 4.041 7 N -0.389 5.389 8 C 0.346 3.654 9 O -0.494 6.494 10 C -0.609 4.609 11 H 0.108 0.892 12 C -0.184 4.184 13 N -0.450 5.450 14 Si 0.813 3.187 15 H -0.179 1.179 16 H -0.201 1.201 17 H -0.179 1.179 18 C 0.013 3.987 19 H 0.076 0.924 20 C -0.163 4.163 21 H 0.088 0.912 22 H 0.102 0.898 23 H 0.096 0.904 24 H 0.152 0.848 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.721 -1.608 -9.341 10.589 hybrid contribution 1.064 0.021 0.571 1.208 sum -3.657 -1.587 -8.770 9.634 Atomic orbital electron populations 1.21763 0.90162 1.03636 1.03613 1.22539 0.96914 0.94032 0.84263 0.93849 1.87839 1.21887 1.77716 1.43306 1.23093 0.80434 0.99944 0.99003 1.22307 1.00534 0.97217 0.84032 1.48271 1.05120 1.67786 1.17738 1.18595 0.87696 0.78035 0.81030 1.90598 1.77014 1.47764 1.34041 1.21492 0.91327 1.46851 1.01231 0.89169 1.26923 1.05969 0.91749 0.93760 1.70164 1.38684 1.32951 1.03244 0.85134 0.75067 0.79995 0.78530 1.17861 1.20055 1.17867 1.21764 0.82106 0.98492 0.96290 0.92351 1.21782 0.98640 0.99678 0.96178 0.91196 0.89769 0.90402 0.84778 0.93799 0.91932 0.88679 0.91662 0.94591 0.91719 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.38 71.98 0.67 -2.68 16 2 C 0.08 2.73 2.85 30.69 0.09 2.82 16 3 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 4 O -0.39 -12.76 10.38 -148.98 -1.55 -14.30 16 5 C 0.05 1.60 6.99 72.08 0.50 2.11 16 6 C 0.08 3.07 6.51 86.36 0.56 3.63 16 7 N -0.65 -30.57 3.02 -798.58 -2.41 -32.98 16 8 C 0.54 31.30 7.53 86.36 0.65 31.95 16 9 O -0.61 -39.31 10.60 -4.31 -0.05 -39.36 16 10 C -0.57 -32.12 8.86 24.83 0.22 -31.90 16 11 H 0.09 4.51 5.75 -2.91 -0.02 4.49 16 12 C 0.03 1.72 5.50 85.30 0.47 2.19 16 13 N -0.82 -49.81 11.85 21.84 0.26 -49.55 16 14 Si 0.99 40.60 29.56 68.60 2.03 42.63 16 15 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 16 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 18 C 0.12 4.80 3.12 44.97 0.14 4.94 16 19 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 20 C -0.11 -4.62 7.53 71.98 0.54 -4.08 16 21 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 22 H 0.08 1.92 6.61 -2.39 -0.02 1.91 16 23 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.13 3.01 8.14 -2.39 -0.02 2.99 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.10 3.58 5.49 -2.39 -0.01 3.57 16 28 H 0.27 15.13 8.29 -92.71 -0.77 14.36 16 29 H 0.03 1.78 6.84 -2.39 -0.02 1.77 16 30 H 0.06 2.21 6.50 -2.38 -0.02 2.20 16 31 H 0.04 1.92 6.74 -2.39 -0.02 1.90 16 Total: -1.00 -72.39 248.18 3.25 -69.14 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.12 Total: 15.44 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 3.85 Total: 8.99 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.15 Total: -82.53 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -1.59 Total: -53.66 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -72.39 3.25 -69.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307673314.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.046 kcal (2) G-P(sol) polarization free energy of solvation -72.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds