Wall clock time and date at job start Sun Mar 29 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47144 * 2 1 4 4 C 1.52999 * 109.50772 * 60.08534 * 3 2 1 5 5 C 1.53098 * 109.54418 * 180.19601 * 3 2 1 6 6 N 1.47015 * 109.25723 * 176.80469 * 5 3 2 7 7 C 1.46898 * 110.99642 * 177.60943 * 6 5 3 8 8 C 1.50705 * 109.46786 * 189.68389 * 7 6 5 9 9 H 1.07999 * 120.00197 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99918 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99759 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00082 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46815 * 90.00290 * 12 10 8 14 14 H 1.48504 * 109.47245 * 209.99899 * 12 10 8 15 15 H 1.48496 * 109.47105 * 330.00020 * 12 10 8 16 16 C 1.47016 * 110.75095 * 301.38182 * 6 5 3 17 17 C 1.53097 * 109.25580 * 58.61926 * 16 6 5 18 18 O 1.43014 * 109.26075 * 303.14382 * 17 16 6 19 19 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46822 * 300.00195 * 1 2 3 21 21 H 1.09000 * 109.47043 * 59.99833 * 1 2 3 22 22 H 1.08998 * 109.47179 * 240.00132 * 2 1 3 23 23 H 1.08999 * 109.47321 * 119.99693 * 2 1 3 24 24 H 1.09006 * 109.47354 * 299.91592 * 4 3 2 25 25 H 1.09000 * 109.46904 * 59.91128 * 4 3 2 26 26 H 1.08991 * 109.47415 * 179.91536 * 4 3 2 27 27 H 1.08999 * 109.50538 * 56.87120 * 5 3 2 28 28 H 1.09004 * 109.50523 * 296.73951 * 5 3 2 29 29 H 1.09001 * 109.46967 * 309.67641 * 7 6 5 30 30 H 1.08991 * 109.47385 * 69.67955 * 7 6 5 31 31 H 0.97001 * 119.99875 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.50136 * 178.55325 * 16 6 5 33 33 H 1.08996 * 109.50988 * 298.64163 * 16 6 5 34 34 H 1.08999 * 109.50517 * 63.08608 * 17 16 6 35 35 H 1.09005 * 109.50389 * 183.17021 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5322 2.1640 1.2500 5 6 3.5710 1.4445 -0.0049 6 7 4.0539 2.8309 -0.0823 7 6 5.5211 2.8808 -0.0323 8 6 5.9700 4.3108 0.1258 9 1 5.2384 5.1032 0.1831 10 6 7.3145 4.6073 0.1975 11 7 8.2053 3.6423 0.1283 12 14 7.8710 6.3798 0.3928 13 1 7.9751 6.7096 1.8370 14 1 9.1970 6.5564 -0.2521 15 1 6.8832 7.2825 -0.2511 16 6 3.5451 3.4930 -1.2923 17 6 2.0144 3.4705 -1.2744 18 8 1.5636 2.1174 -1.1675 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.4422 2.1657 1.2510 25 1 1.8955 1.6491 2.1394 26 1 1.8971 3.1910 1.2502 27 1 3.9329 0.8844 -0.8672 28 1 3.9385 0.9816 0.9110 29 1 5.8761 2.2929 0.8141 30 1 5.9303 2.4716 -0.9560 31 1 9.1513 3.8509 0.1790 32 1 3.8937 4.5254 -1.3161 33 1 3.9071 2.9661 -2.1751 34 1 1.6519 4.0434 -0.4209 35 1 1.6331 3.9100 -2.1962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307677821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:34 Heat of formation + Delta-G solvation = -52.513613 kcal Electronic energy + Delta-G solvation = -15119.255622 eV Core-core repulsion = 12730.946873 eV Total energy + Delta-G solvation = -2388.308749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57032 -35.37031 -34.09525 -32.45932 -29.72124 -28.65836 -27.18671 -24.91101 -23.45040 -22.39838 -20.30485 -18.75510 -16.46699 -15.82731 -15.72511 -14.54003 -14.35766 -14.31838 -14.20814 -13.59760 -13.05388 -12.85838 -12.19865 -11.92949 -11.79607 -11.50374 -11.28711 -11.09388 -10.92685 -10.82020 -10.77548 -10.51312 -10.44169 -10.08688 -9.67534 -9.34309 -8.87446 -8.45173 -7.27761 -6.04796 -4.06569 3.30700 3.36578 3.39845 4.11781 4.39742 4.79059 5.11191 5.17402 5.31328 5.33567 5.47615 5.65021 5.73727 5.77829 5.82167 5.91792 5.97061 6.04521 6.09231 6.20976 6.30988 6.34011 6.41461 6.57708 6.62817 6.74269 7.23670 7.31662 7.64539 7.76212 8.04255 8.14950 8.50666 9.00650 9.57756 11.06168 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.057290 B = 0.007345 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.622188 B = 3811.456042 C = 3987.361715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.118 3.882 4 C -0.166 4.166 5 C 0.031 3.969 6 N -0.531 5.531 7 C 0.193 3.807 8 C -0.508 4.508 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.899 3.101 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.028 3.972 17 C 0.061 3.939 18 O -0.382 6.382 19 H 0.047 0.953 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.065 0.935 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.075 0.925 29 H 0.030 0.970 30 H -0.009 1.009 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 -4.159 -0.418 13.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C 0.079 3.921 4 C -0.224 4.224 5 C -0.098 4.098 6 N -0.256 5.256 7 C 0.068 3.932 8 C -0.547 4.547 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.727 3.273 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.100 4.100 17 C -0.016 4.016 18 O -0.302 6.302 19 H 0.067 0.933 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.640 -4.022 -0.142 13.265 hybrid contribution 1.114 0.607 -0.417 1.335 sum -11.526 -3.415 -0.559 12.034 Atomic orbital electron populations 1.21724 0.95469 1.00826 1.02375 1.21486 0.96528 0.94332 1.02286 1.21527 0.92690 0.92096 0.85804 1.22276 1.00197 1.02689 0.97195 1.22667 0.94188 0.92099 1.00836 1.62350 1.14113 1.12653 1.36516 1.19737 0.79669 0.97839 0.95987 1.21138 0.91477 0.92491 1.49546 0.91887 1.24997 0.96681 0.97508 0.95436 1.69962 1.01300 1.31782 1.50756 0.86485 0.77905 0.84684 0.78258 1.20608 1.21304 1.19857 1.22611 0.93976 1.01563 0.91888 1.22711 0.94320 0.83399 1.01172 1.87906 1.73051 1.25579 1.43615 0.93345 0.92643 0.92059 0.91633 0.90863 0.92799 0.92146 0.90709 0.95317 0.90670 0.95148 0.99116 0.92895 0.89114 0.95416 0.92575 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.42 37.16 0.35 -1.35 16 2 C -0.11 -1.43 5.21 -26.73 -0.14 -1.57 16 3 C 0.12 1.89 0.79 -90.57 -0.07 1.82 16 4 C -0.17 -2.49 7.81 37.16 0.29 -2.20 16 5 C 0.03 0.59 4.35 -3.71 -0.02 0.57 16 6 N -0.53 -11.67 4.09 -235.75 -0.96 -12.63 16 7 C 0.19 5.09 4.72 -4.97 -0.02 5.07 16 8 C -0.51 -14.29 8.48 -34.44 -0.29 -14.58 16 9 H 0.06 1.74 7.11 -52.49 -0.37 1.37 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 12 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 16 C 0.03 0.57 5.46 -3.71 -0.02 0.55 16 17 C 0.06 1.01 6.61 37.21 0.25 1.25 16 18 O -0.38 -6.52 9.61 -35.23 -0.34 -6.86 16 19 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 20 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 21 H 0.06 0.76 7.68 -51.93 -0.40 0.37 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.26 6.13 -51.93 -0.32 0.94 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 29 H 0.03 0.86 8.04 -51.93 -0.42 0.44 16 30 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.09 1.90 6.80 -51.93 -0.35 1.55 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.91 6.49 -51.93 -0.34 0.57 16 35 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 272.80 15.07 4.11 4.11 Total: -1.00 -29.82 272.80 -7.05 -36.88 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.80 Total: -3.03 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 0.23 Total: -8.97 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.23 Total: -38.73 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.34 Total: -6.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.82 -7.05 -36.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307677821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.637 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds