Wall clock time and date at job start Sun Mar 29 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47144 * 2 1 4 4 C 1.52999 * 109.50772 * 60.08534 * 3 2 1 5 5 C 1.53098 * 109.54418 * 180.19601 * 3 2 1 6 6 N 1.47015 * 109.25723 * 176.80469 * 5 3 2 7 7 C 1.46898 * 110.99642 * 177.60943 * 6 5 3 8 8 C 1.50705 * 109.46786 * 189.68389 * 7 6 5 9 9 H 1.07999 * 120.00197 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99918 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99759 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00082 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46815 * 90.00290 * 12 10 8 14 14 H 1.48504 * 109.47245 * 209.99899 * 12 10 8 15 15 H 1.48496 * 109.47105 * 330.00020 * 12 10 8 16 16 C 1.47016 * 110.75095 * 301.38182 * 6 5 3 17 17 C 1.53097 * 109.25580 * 58.61926 * 16 6 5 18 18 O 1.43014 * 109.26075 * 303.14382 * 17 16 6 19 19 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46822 * 300.00195 * 1 2 3 21 21 H 1.09000 * 109.47043 * 59.99833 * 1 2 3 22 22 H 1.08998 * 109.47179 * 240.00132 * 2 1 3 23 23 H 1.08999 * 109.47321 * 119.99693 * 2 1 3 24 24 H 1.09006 * 109.47354 * 299.91592 * 4 3 2 25 25 H 1.09000 * 109.46904 * 59.91128 * 4 3 2 26 26 H 1.08991 * 109.47415 * 179.91536 * 4 3 2 27 27 H 1.08999 * 109.50538 * 56.87120 * 5 3 2 28 28 H 1.09004 * 109.50523 * 296.73951 * 5 3 2 29 29 H 1.09001 * 109.46967 * 309.67641 * 7 6 5 30 30 H 1.08991 * 109.47385 * 69.67955 * 7 6 5 31 31 H 0.97001 * 119.99875 * 180.02562 * 11 10 8 32 32 H 1.09000 * 109.50136 * 178.55325 * 16 6 5 33 33 H 1.08996 * 109.50988 * 298.64163 * 16 6 5 34 34 H 1.08999 * 109.50517 * 63.08608 * 17 16 6 35 35 H 1.09005 * 109.50389 * 183.17021 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5322 2.1640 1.2500 5 6 3.5710 1.4445 -0.0049 6 7 4.0539 2.8309 -0.0823 7 6 5.5211 2.8808 -0.0323 8 6 5.9700 4.3108 0.1258 9 1 5.2384 5.1032 0.1831 10 6 7.3145 4.6073 0.1975 11 7 8.2053 3.6423 0.1283 12 14 7.8710 6.3798 0.3928 13 1 7.9751 6.7096 1.8370 14 1 9.1970 6.5564 -0.2521 15 1 6.8832 7.2825 -0.2511 16 6 3.5451 3.4930 -1.2923 17 6 2.0144 3.4705 -1.2744 18 8 1.5636 2.1174 -1.1675 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.4422 2.1657 1.2510 25 1 1.8955 1.6491 2.1394 26 1 1.8971 3.1910 1.2502 27 1 3.9329 0.8844 -0.8672 28 1 3.9385 0.9816 0.9110 29 1 5.8761 2.2929 0.8141 30 1 5.9303 2.4716 -0.9560 31 1 9.1513 3.8509 0.1790 32 1 3.8937 4.5254 -1.3161 33 1 3.9071 2.9661 -2.1751 34 1 1.6519 4.0434 -0.4209 35 1 1.6331 3.9100 -2.1962 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307677821.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:33 Heat of formation + Delta-G solvation = -72.365714 kcal Electronic energy + Delta-G solvation = -15120.116474 eV Core-core repulsion = 12730.946873 eV Total energy + Delta-G solvation = -2389.169601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99965 -37.08114 -35.34008 -34.57240 -30.96132 -30.33915 -28.85077 -26.52952 -24.86437 -24.12948 -21.86383 -20.16086 -18.58726 -17.38218 -17.04470 -16.41976 -15.96897 -15.90697 -15.57919 -14.85990 -14.62562 -14.28119 -14.12432 -13.31306 -13.06364 -12.91524 -12.82245 -12.68552 -12.63157 -12.58374 -12.24610 -12.02878 -11.86914 -11.60069 -11.40662 -11.02467 -10.64719 -10.39782 -9.12083 -8.23875 -6.34918 1.40173 1.41979 1.53008 2.37934 2.82212 3.07913 3.17504 3.81299 3.96665 4.04715 4.18520 4.28248 4.42708 4.46920 4.62235 4.65300 4.70755 4.78060 4.88198 4.92421 5.00450 5.12192 5.14373 5.16218 5.20463 5.27033 5.43423 5.58931 5.60030 5.97926 6.20422 6.30813 6.51784 6.80301 7.35146 8.87713 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.057290 B = 0.007345 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.622188 B = 3811.456042 C = 3987.361715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C 0.120 3.880 4 C -0.161 4.161 5 C 0.028 3.972 6 N -0.533 5.533 7 C 0.207 3.793 8 C -0.524 4.524 9 H 0.066 0.934 10 C 0.000 4.000 11 N -0.936 5.936 12 Si 0.973 3.027 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.262 1.262 16 C 0.028 3.972 17 C 0.069 3.931 18 O -0.386 6.386 19 H 0.067 0.933 20 H 0.063 0.937 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.015 0.985 28 H 0.075 0.925 29 H 0.004 0.996 30 H -0.043 1.043 31 H 0.265 0.735 32 H 0.078 0.922 33 H 0.013 0.987 34 H 0.065 0.935 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 -3.462 -0.028 14.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.080 3.920 4 C -0.218 4.218 5 C -0.101 4.101 6 N -0.258 5.258 7 C 0.081 3.919 8 C -0.562 4.562 9 H 0.084 0.916 10 C -0.198 4.198 11 N -0.576 5.576 12 Si 0.797 3.203 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.186 1.186 16 C -0.101 4.101 17 C -0.007 4.007 18 O -0.305 6.305 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.094 0.906 29 H 0.023 0.977 30 H -0.025 1.025 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.372 -3.332 0.246 14.755 hybrid contribution 1.651 0.323 -0.550 1.770 sum -12.720 -3.009 -0.303 13.075 Atomic orbital electron populations 1.21684 0.93701 1.02164 1.02264 1.21525 0.97982 0.92146 1.02845 1.21658 0.90065 0.94112 0.86156 1.22228 1.01551 1.01248 0.96789 1.22823 0.96908 0.90124 1.00223 1.62285 1.11104 1.14753 1.37633 1.19398 0.82617 0.96770 0.93115 1.21431 0.92008 0.93114 1.49686 0.91617 1.25968 0.96692 1.02366 0.94726 1.70097 1.01756 1.34316 1.51467 0.85322 0.77549 0.78828 0.78555 1.19732 1.20805 1.18628 1.22672 0.96807 1.00266 0.90353 1.22730 0.91181 0.83678 1.03141 1.87919 1.72667 1.25720 1.44196 0.91376 0.91829 0.93009 0.92138 0.89385 0.90549 0.91346 0.92736 0.96699 0.90638 0.97740 1.02537 0.92617 0.90332 0.96917 0.91709 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.42 71.98 0.68 -2.14 16 2 C -0.11 -2.60 5.21 30.60 0.16 -2.44 16 3 C 0.12 3.65 0.79 -10.76 -0.01 3.65 16 4 C -0.16 -4.48 7.81 71.98 0.56 -3.92 16 5 C 0.03 1.07 4.35 86.31 0.38 1.45 16 6 N -0.53 -23.94 4.09 -899.78 -3.68 -27.62 16 7 C 0.21 11.44 4.72 85.56 0.40 11.84 16 8 C -0.52 -30.07 8.48 25.60 0.22 -29.86 16 9 H 0.07 3.66 7.11 -2.91 -0.02 3.64 16 10 C 0.00 0.03 5.46 84.65 0.46 0.49 16 11 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 12 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 13 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 16 C 0.03 1.11 5.46 86.31 0.47 1.59 16 17 C 0.07 2.18 6.61 72.01 0.48 2.66 16 18 O -0.39 -12.46 9.61 -148.98 -1.43 -13.89 16 19 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 20 H 0.06 1.17 6.44 -2.39 -0.02 1.16 16 21 H 0.05 1.14 7.68 -2.39 -0.02 1.12 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.08 1.79 6.44 -2.38 -0.02 1.77 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 26 H 0.05 1.75 6.13 -2.39 -0.01 1.73 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 2.84 8.09 -2.38 -0.02 2.82 16 29 H 0.00 0.27 8.04 -2.39 -0.02 0.25 16 30 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 31 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.08 3.33 6.80 -2.39 -0.02 3.32 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 1.96 6.49 -2.39 -0.02 1.95 16 35 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 Total: -1.00 -64.71 272.80 2.04 -62.67 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.04 Total: 5.96 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 3.80 Total: -16.69 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -3.39 Total: -84.43 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -1.43 Total: -13.89 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -64.71 2.04 -62.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307677821.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.696 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds