Wall clock time and date at job start Sun Mar 29 2020 22:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47208 * 2 1 4 4 C 1.53006 * 109.50740 * 305.08713 * 3 2 1 5 5 C 1.53094 * 109.50850 * 185.00213 * 3 2 1 6 6 N 1.47011 * 109.26017 * 183.17546 * 5 3 2 7 7 C 1.46899 * 111.00014 * 182.39205 * 6 5 3 8 8 C 1.50703 * 109.47107 * 169.99775 * 7 6 5 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00001 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99923 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00006 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.47093 * 90.00088 * 12 10 8 14 14 H 1.48500 * 109.47049 * 210.00797 * 12 10 8 15 15 H 1.48504 * 109.47189 * 330.00185 * 12 10 8 16 16 C 1.47013 * 110.75620 * 58.61258 * 6 5 3 17 17 C 1.53099 * 109.25643 * 301.38586 * 16 6 5 18 18 O 1.43014 * 109.25885 * 56.84790 * 17 16 6 19 19 H 1.08997 * 109.47208 * 60.00008 * 1 2 3 20 20 H 1.09002 * 109.47379 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47271 * 300.00067 * 1 2 3 22 22 H 1.08997 * 109.46779 * 239.99773 * 2 1 3 23 23 H 1.08999 * 109.46748 * 120.00250 * 2 1 3 24 24 H 1.08999 * 109.46965 * 299.91655 * 4 3 2 25 25 H 1.09001 * 109.46733 * 59.91129 * 4 3 2 26 26 H 1.08991 * 109.47187 * 179.91102 * 4 3 2 27 27 H 1.08999 * 109.50736 * 63.23743 * 5 3 2 28 28 H 1.09004 * 109.53644 * 303.12902 * 5 3 2 29 29 H 1.09002 * 109.47043 * 289.99755 * 7 6 5 30 30 H 1.09001 * 109.47354 * 49.99816 * 7 6 5 31 31 H 0.97000 * 119.99684 * 180.02562 * 11 10 8 32 32 H 1.08995 * 109.50757 * 61.32024 * 16 6 5 33 33 H 1.09000 * 109.50677 * 181.45449 * 16 6 5 34 34 H 1.08994 * 109.50770 * 296.91494 * 17 16 6 35 35 H 1.09003 * 109.54264 * 176.80054 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4288 2.2005 -1.1802 5 6 3.5658 1.4453 -0.1258 6 7 4.0562 2.8290 -0.0487 7 6 5.5139 2.8814 -0.2224 8 6 5.9495 4.3151 -0.3835 9 1 5.2166 5.1080 -0.3597 10 6 7.2834 4.6144 -0.5622 11 7 7.6636 5.8656 -0.7023 12 14 8.5510 3.2429 -0.6041 13 1 8.7251 2.7723 -2.0017 14 1 9.8473 3.7509 -0.0876 15 1 8.0882 2.1150 0.2439 16 6 3.6539 3.4545 1.2194 17 6 2.1272 3.4316 1.3317 18 8 1.6664 2.0820 1.2234 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.7170 1.7149 -2.1124 25 1 0.3425 2.1982 -1.0900 26 1 1.7912 3.2284 -1.1787 27 1 3.8529 1.0102 -1.0831 28 1 3.9995 0.8597 0.6849 29 1 5.9998 2.4502 0.6529 30 1 5.7948 2.3145 -1.1100 31 1 8.6020 6.0761 -0.8284 32 1 4.0884 2.9013 2.0520 33 1 4.0052 4.4860 1.2440 34 1 1.6942 4.0294 0.5297 35 1 1.8262 3.8427 2.2953 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307677823.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:36 Heat of formation + Delta-G solvation = -47.599243 kcal Electronic energy + Delta-G solvation = -15157.326413 eV Core-core repulsion = 12769.230768 eV Total energy + Delta-G solvation = -2388.095646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.66232 -35.51957 -34.19243 -32.42550 -29.76790 -28.99016 -27.50997 -25.03816 -23.58079 -22.15528 -20.19888 -18.82553 -16.89365 -15.95249 -15.80523 -14.54101 -14.46830 -14.36457 -14.11378 -13.66977 -13.23485 -13.07366 -12.37959 -12.01290 -11.81319 -11.61979 -11.58612 -11.18075 -10.98818 -10.82914 -10.78777 -10.54315 -10.50224 -9.93298 -9.76645 -9.37295 -8.98887 -8.59598 -7.42458 -6.08210 -4.05807 3.26252 3.33785 3.36025 4.05729 4.39414 4.61333 5.03326 5.09251 5.24968 5.26677 5.39843 5.58329 5.67602 5.71069 5.76800 5.87173 5.88527 5.97860 6.01618 6.12600 6.22152 6.26710 6.34653 6.48277 6.56663 6.69719 6.80440 6.93585 7.53325 7.59574 7.83065 7.97662 8.61686 8.99252 9.53458 11.04776 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050519 B = 0.007975 C = 0.007456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.111588 B = 3510.135377 C = 3754.699540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.119 3.881 4 C -0.168 4.168 5 C 0.028 3.972 6 N -0.522 5.522 7 C 0.162 3.838 8 C -0.510 4.510 9 H 0.081 0.919 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.875 3.125 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.269 1.269 16 C 0.028 3.972 17 C 0.061 3.939 18 O -0.382 6.382 19 H 0.056 0.944 20 H 0.048 0.952 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.029 0.971 29 H -0.011 1.011 30 H 0.024 0.976 31 H 0.264 0.736 32 H 0.028 0.972 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -9.719 1.685 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C 0.079 3.921 4 C -0.225 4.225 5 C -0.101 4.101 6 N -0.247 5.247 7 C 0.036 3.964 8 C -0.548 4.548 9 H 0.099 0.901 10 C -0.133 4.133 11 N -0.538 5.538 12 Si 0.702 3.298 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.193 1.193 16 C -0.101 4.101 17 C -0.016 4.016 18 O -0.302 6.302 19 H 0.075 0.925 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.006 0.994 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.601 -9.423 1.414 15.013 hybrid contribution 1.510 -0.932 0.396 1.818 sum -10.092 -10.356 1.809 14.572 Atomic orbital electron populations 1.21762 0.95413 1.00939 1.02432 1.21479 0.96575 0.94299 1.02280 1.21508 0.92969 0.92531 0.85045 1.22302 1.00058 1.02578 0.97576 1.22727 0.94636 0.91796 1.00943 1.62167 1.15741 1.14045 1.32736 1.20192 0.82534 0.98669 0.95052 1.21007 0.93391 0.91053 1.49365 0.90133 1.24892 0.98264 0.95301 0.94821 1.69890 1.16632 1.17356 1.49965 0.86868 0.81309 0.82863 0.78765 1.20119 1.21138 1.19338 1.22650 0.94633 1.02089 0.90690 1.22722 0.94033 0.83430 1.01404 1.87913 1.77108 1.26787 1.38357 0.92455 0.93282 0.92100 0.90860 0.91587 0.92124 0.92586 0.90602 0.90611 0.95258 0.99356 0.95754 0.92628 0.95352 0.88512 0.92353 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.32 37.16 0.35 -1.29 16 2 C -0.11 -1.37 5.24 -26.73 -0.14 -1.51 16 3 C 0.12 1.84 0.80 -90.57 -0.07 1.76 16 4 C -0.17 -2.45 7.68 37.16 0.29 -2.17 16 5 C 0.03 0.50 4.34 -3.71 -0.02 0.49 16 6 N -0.52 -11.10 4.09 -235.75 -0.96 -12.06 16 7 C 0.16 3.97 3.79 -4.98 -0.02 3.96 16 8 C -0.51 -14.47 9.04 -34.44 -0.31 -14.78 16 9 H 0.08 2.47 7.38 -52.49 -0.39 2.08 16 10 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 11 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 12 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 16 C 0.03 0.55 5.46 -3.71 -0.02 0.53 16 17 C 0.06 0.99 6.61 37.21 0.25 1.24 16 18 O -0.38 -6.36 9.83 -35.23 -0.35 -6.70 16 19 H 0.06 0.61 6.34 -51.93 -0.33 0.28 16 20 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.73 7.83 -51.92 -0.41 0.32 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.73 6.34 -51.93 -0.33 0.40 16 26 H 0.08 1.26 6.12 -51.93 -0.32 0.95 16 27 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 30 H 0.02 0.60 7.46 -51.93 -0.39 0.21 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 2.06 6.83 -51.93 -0.35 1.70 16 34 H 0.06 0.94 6.49 -51.93 -0.34 0.61 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 269.21 15.07 4.06 4.06 Total: -1.00 -30.26 269.21 -6.72 -36.98 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.77 Total: -2.59 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 0.20 Total: -9.88 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: -0.19 Total: -38.76 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.35 Total: -6.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.26 -6.72 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307677823.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.623 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds