Wall clock time and date at job start Sun Mar 29 2020 22:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.58598 * 2 1 4 4 C 1.54279 * 109.52996 * 120.18029 * 2 1 3 5 5 N 1.40444 * 111.68851 * 42.66257 * 4 2 1 6 6 C 1.46903 * 110.99971 * 188.30352 * 5 4 2 7 7 C 1.50697 * 109.46832 * 170.00036 * 6 5 4 8 8 H 1.08005 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99706 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00432 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99957 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47001 * 269.99973 * 11 9 7 13 13 H 1.48506 * 109.47327 * 29.99794 * 11 9 7 14 14 H 1.48496 * 109.47214 * 149.99988 * 11 9 7 15 15 C 1.47630 * 114.31440 * 61.81277 * 5 4 2 16 16 C 1.50896 * 108.77088 * 279.99956 * 15 5 4 17 17 C 1.53621 * 111.71602 * 91.01261 * 16 15 5 18 18 O 1.40629 * 109.52888 * 239.82672 * 2 1 3 19 19 H 1.09000 * 109.47013 * 337.35100 * 1 2 3 20 20 H 1.09004 * 109.47119 * 97.34962 * 1 2 3 21 21 H 1.08998 * 109.47105 * 217.34766 * 1 2 3 22 22 H 1.09001 * 109.46656 * 180.17400 * 3 2 1 23 23 H 1.08998 * 109.47346 * 300.17804 * 3 2 1 24 24 H 1.08996 * 109.46941 * 60.17835 * 3 2 1 25 25 H 1.09005 * 109.03702 * 282.09873 * 4 2 1 26 26 H 1.08993 * 108.97776 * 163.19431 * 4 2 1 27 27 H 1.08997 * 109.46739 * 50.00172 * 6 5 4 28 28 H 1.09003 * 109.46894 * 290.00133 * 6 5 4 29 29 H 0.96993 * 120.00286 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.58977 * 39.78291 * 15 5 4 31 31 H 1.09001 * 109.59044 * 160.21466 * 15 5 4 32 32 H 1.08994 * 109.03544 * 330.43307 * 16 15 5 33 33 H 1.09004 * 108.97326 * 211.54420 * 16 15 5 34 34 H 1.09002 * 108.86565 * 197.84971 * 17 16 15 35 35 H 1.08998 * 108.86750 * 79.42645 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0429 1.4415 0.0000 4 6 2.0457 -0.7310 1.2569 5 7 1.3148 -1.9027 1.5125 6 6 1.6835 -2.4802 2.8120 7 6 0.7186 -3.5832 3.1633 8 1 -0.0876 -3.8307 2.4885 9 6 0.8650 -4.2763 4.3461 10 7 1.8470 -3.9753 5.1676 11 14 -0.3306 -5.6440 4.7813 12 1 -1.4735 -5.0787 5.5425 13 1 -0.8312 -6.2790 3.5357 14 1 0.3623 -6.6616 5.6117 15 6 1.3957 -2.9154 0.4413 16 6 0.4427 -2.5306 -0.6636 17 6 1.1265 -1.6551 -1.7247 18 8 2.0001 -0.6662 -1.1458 19 1 -0.3633 0.9484 0.3957 20 1 -0.3633 -0.1315 -1.0193 21 1 -0.3633 -0.8169 0.6234 22 1 3.1329 1.4392 -0.0031 23 1 1.6780 1.9570 -0.8884 24 1 1.6832 1.9550 0.8916 25 1 1.9611 -0.0648 2.1155 26 1 3.0941 -0.9907 1.1108 27 1 1.6445 -1.7057 3.5779 28 1 2.6938 -2.8854 2.7559 29 1 1.9502 -4.4631 5.9995 30 1 2.4124 -2.9533 0.0502 31 1 1.1184 -3.8914 0.8395 32 1 -0.3950 -1.9806 -0.2350 33 1 0.0668 -3.4366 -1.1389 34 1 0.3599 -1.1482 -2.3107 35 1 1.7088 -2.2949 -2.3877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307692420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:35 Heat of formation + Delta-G solvation = -26.710180 kcal Electronic energy + Delta-G solvation = -15413.767248 eV Core-core repulsion = 13026.577420 eV Total energy + Delta-G solvation = -2387.189828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.91186 -35.92760 -33.33989 -32.62765 -30.98268 -27.39151 -27.07365 -25.67400 -24.03421 -21.70331 -19.87971 -19.13493 -16.54993 -15.96827 -15.75080 -15.03724 -14.76513 -14.51702 -13.50095 -13.36457 -12.59407 -12.41970 -12.32557 -12.08288 -11.78640 -11.49624 -11.29943 -11.15311 -10.88107 -10.84131 -10.54747 -10.28424 -10.09589 -9.85777 -9.77343 -9.21331 -8.82850 -8.44153 -7.09812 -6.02845 -4.04340 3.31276 3.37377 3.40364 4.05297 4.42021 4.93289 5.12746 5.24277 5.32459 5.37928 5.50937 5.54430 5.67403 5.79275 5.93417 5.98946 6.07130 6.20240 6.23520 6.24753 6.30670 6.48744 6.56326 6.74874 6.81131 6.90062 7.35811 7.42576 7.80045 7.84035 8.18500 8.24148 8.69986 9.03247 9.59789 11.07896 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046293 B = 0.008527 C = 0.007837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.699495 B = 3282.962741 C = 3571.861108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.118 3.882 3 C -0.138 4.138 4 C 0.061 3.939 5 N -0.553 5.553 6 C 0.198 3.802 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.897 3.103 12 H -0.281 1.281 13 H -0.274 1.274 14 H -0.288 1.288 15 C 0.071 3.929 16 C -0.173 4.173 17 C 0.069 3.931 18 O -0.387 6.387 19 H 0.051 0.949 20 H 0.055 0.945 21 H 0.107 0.893 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.016 0.984 27 H 0.029 0.971 28 H -0.009 1.009 29 H 0.261 0.739 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.044 0.956 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 6.162 -10.719 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.078 3.922 3 C -0.196 4.196 4 C -0.070 4.070 5 N -0.277 5.277 6 C 0.074 3.926 7 C -0.546 4.546 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.199 1.199 14 H -0.213 1.213 15 C -0.056 4.056 16 C -0.211 4.211 17 C -0.007 4.007 18 O -0.307 6.307 19 H 0.070 0.930 20 H 0.074 0.926 21 H 0.125 0.875 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.008 0.992 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.136 6.284 -10.594 12.501 hybrid contribution 0.042 -1.030 0.424 1.114 sum -2.094 5.254 -10.170 11.637 Atomic orbital electron populations 1.23026 0.95365 1.03948 1.02546 1.21446 0.93884 0.91424 0.85470 1.21864 1.01648 0.94303 1.01793 1.21445 0.94981 0.93738 0.96834 1.59180 1.58233 1.05464 1.04844 1.19670 0.94739 0.94501 0.83692 1.21180 1.12791 1.16419 1.04253 0.91812 1.24998 0.95693 0.97594 0.96356 1.69960 1.30979 1.41635 1.11161 0.86514 0.80950 0.81628 0.78391 1.20666 1.19886 1.21343 1.21605 0.96517 0.96795 0.90680 1.22567 1.01462 1.00115 0.96912 1.22796 0.93498 0.89554 0.94840 1.87444 1.45667 1.53561 1.44026 0.93027 0.92568 0.87493 0.92305 0.92481 0.91370 0.91152 0.96624 0.95302 0.99161 0.92931 0.95644 0.89210 0.88542 0.91703 0.93832 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.93 7.38 37.16 0.27 -2.65 16 2 C 0.12 1.93 1.10 -89.95 -0.10 1.83 16 3 C -0.14 -1.88 8.55 37.16 0.32 -1.57 16 4 C 0.06 1.18 4.16 -6.50 -0.03 1.15 16 5 N -0.55 -12.00 2.89 -241.02 -0.70 -12.70 16 6 C 0.20 5.20 4.73 -4.98 -0.02 5.18 16 7 C -0.51 -14.11 8.12 -34.44 -0.28 -14.39 16 8 H 0.06 1.74 7.12 -52.48 -0.37 1.36 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 11 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 15 C 0.07 1.43 5.07 -4.48 -0.02 1.40 16 16 C -0.17 -2.77 5.32 -27.46 -0.15 -2.92 16 17 C 0.07 1.01 5.96 37.48 0.22 1.24 16 18 O -0.39 -6.59 9.74 -34.28 -0.33 -6.92 16 19 H 0.05 0.71 7.74 -51.93 -0.40 0.31 16 20 H 0.06 0.78 5.73 -51.93 -0.30 0.48 16 21 H 0.11 1.87 4.49 -51.93 -0.23 1.64 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 25 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 26 H 0.02 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.03 0.81 7.85 -51.93 -0.41 0.40 16 28 H -0.01 -0.27 8.14 -51.93 -0.42 -0.69 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.52 7.64 -51.93 -0.40 0.12 16 31 H 0.09 1.96 6.29 -51.93 -0.33 1.63 16 32 H 0.10 1.59 4.41 -51.93 -0.23 1.36 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.56 6.91 -51.93 -0.36 0.20 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 263.73 15.07 3.97 3.97 Total: -1.00 -29.52 263.73 -6.74 -36.26 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.52 Total: -1.87 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 0.12 Total: -9.27 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.04 Total: -38.67 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.33 Total: -6.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.52 -6.74 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307692420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.549 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds