Wall clock time and date at job start Sun Mar 29 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.58598 * 2 1 4 4 C 1.54279 * 109.52996 * 120.18029 * 2 1 3 5 5 N 1.40444 * 111.68851 * 42.66257 * 4 2 1 6 6 C 1.46903 * 110.99971 * 188.30352 * 5 4 2 7 7 C 1.50697 * 109.46832 * 170.00036 * 6 5 4 8 8 H 1.08005 * 120.00103 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99706 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00432 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99957 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47001 * 269.99973 * 11 9 7 13 13 H 1.48506 * 109.47327 * 29.99794 * 11 9 7 14 14 H 1.48496 * 109.47214 * 149.99988 * 11 9 7 15 15 C 1.47630 * 114.31440 * 61.81277 * 5 4 2 16 16 C 1.50896 * 108.77088 * 279.99956 * 15 5 4 17 17 C 1.53621 * 111.71602 * 91.01261 * 16 15 5 18 18 O 1.40629 * 109.52888 * 239.82672 * 2 1 3 19 19 H 1.09000 * 109.47013 * 337.35100 * 1 2 3 20 20 H 1.09004 * 109.47119 * 97.34962 * 1 2 3 21 21 H 1.08998 * 109.47105 * 217.34766 * 1 2 3 22 22 H 1.09001 * 109.46656 * 180.17400 * 3 2 1 23 23 H 1.08998 * 109.47346 * 300.17804 * 3 2 1 24 24 H 1.08996 * 109.46941 * 60.17835 * 3 2 1 25 25 H 1.09005 * 109.03702 * 282.09873 * 4 2 1 26 26 H 1.08993 * 108.97776 * 163.19431 * 4 2 1 27 27 H 1.08997 * 109.46739 * 50.00172 * 6 5 4 28 28 H 1.09003 * 109.46894 * 290.00133 * 6 5 4 29 29 H 0.96993 * 120.00286 * 180.02562 * 10 9 7 30 30 H 1.09001 * 109.58977 * 39.78291 * 15 5 4 31 31 H 1.09001 * 109.59044 * 160.21466 * 15 5 4 32 32 H 1.08994 * 109.03544 * 330.43307 * 16 15 5 33 33 H 1.09004 * 108.97326 * 211.54420 * 16 15 5 34 34 H 1.09002 * 108.86565 * 197.84971 * 17 16 15 35 35 H 1.08998 * 108.86750 * 79.42645 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0429 1.4415 0.0000 4 6 2.0457 -0.7310 1.2569 5 7 1.3148 -1.9027 1.5125 6 6 1.6835 -2.4802 2.8120 7 6 0.7186 -3.5832 3.1633 8 1 -0.0876 -3.8307 2.4885 9 6 0.8650 -4.2763 4.3461 10 7 1.8470 -3.9753 5.1676 11 14 -0.3306 -5.6440 4.7813 12 1 -1.4735 -5.0787 5.5425 13 1 -0.8312 -6.2790 3.5357 14 1 0.3623 -6.6616 5.6117 15 6 1.3957 -2.9154 0.4413 16 6 0.4427 -2.5306 -0.6636 17 6 1.1265 -1.6551 -1.7247 18 8 2.0001 -0.6662 -1.1458 19 1 -0.3633 0.9484 0.3957 20 1 -0.3633 -0.1315 -1.0193 21 1 -0.3633 -0.8169 0.6234 22 1 3.1329 1.4392 -0.0031 23 1 1.6780 1.9570 -0.8884 24 1 1.6832 1.9550 0.8916 25 1 1.9611 -0.0648 2.1155 26 1 3.0941 -0.9907 1.1108 27 1 1.6445 -1.7057 3.5779 28 1 2.6938 -2.8854 2.7559 29 1 1.9502 -4.4631 5.9995 30 1 2.4124 -2.9533 0.0502 31 1 1.1184 -3.8914 0.8395 32 1 -0.3950 -1.9806 -0.2350 33 1 0.0668 -3.4366 -1.1389 34 1 0.3599 -1.1482 -2.3107 35 1 1.7088 -2.2949 -2.3877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307692420.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:34 Heat of formation + Delta-G solvation = -45.861697 kcal Electronic energy + Delta-G solvation = -15414.597720 eV Core-core repulsion = 13026.577420 eV Total energy + Delta-G solvation = -2388.020300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31850 -37.58730 -34.76326 -34.58946 -32.43372 -29.37114 -28.31948 -27.04461 -25.80214 -23.46577 -21.45043 -20.46922 -18.58517 -17.47223 -17.24422 -16.43698 -16.37045 -16.25344 -15.06715 -15.04455 -14.28015 -14.08572 -13.60081 -13.29502 -13.25598 -13.13309 -12.80803 -12.64045 -12.58958 -12.42665 -12.30714 -12.02777 -11.71107 -11.32825 -11.23488 -11.10828 -10.62819 -10.18431 -8.93263 -8.20884 -6.31428 1.41227 1.42870 1.53790 2.39843 2.83696 3.11415 3.29011 3.83732 3.97571 4.05099 4.19338 4.28693 4.43969 4.54540 4.67496 4.68950 4.79221 4.83085 4.87362 4.94892 5.08166 5.10155 5.15576 5.23049 5.25632 5.34345 5.48482 5.60563 5.65858 6.06489 6.31049 6.57923 6.82547 6.86669 7.38278 8.90457 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046293 B = 0.008527 C = 0.007837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.699495 B = 3282.962741 C = 3571.861108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.121 3.879 3 C -0.135 4.135 4 C 0.056 3.944 5 N -0.547 5.547 6 C 0.212 3.788 7 C -0.520 4.520 8 H 0.068 0.932 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.972 3.028 12 H -0.272 1.272 13 H -0.262 1.262 14 H -0.284 1.284 15 C 0.073 3.927 16 C -0.166 4.166 17 C 0.065 3.935 18 O -0.403 6.403 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.065 0.935 26 H -0.006 1.006 27 H 0.003 0.997 28 H -0.046 1.046 29 H 0.264 0.736 30 H 0.015 0.985 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 6.353 -12.379 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.081 3.919 3 C -0.192 4.192 4 C -0.075 4.075 5 N -0.271 5.271 6 C 0.086 3.914 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.796 3.204 12 H -0.198 1.198 13 H -0.186 1.186 14 H -0.210 1.210 15 C -0.055 4.055 16 C -0.204 4.204 17 C -0.010 4.010 18 O -0.323 6.323 19 H 0.086 0.914 20 H 0.095 0.905 21 H 0.101 0.899 22 H 0.073 0.927 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.012 0.988 27 H 0.021 0.979 28 H -0.029 1.029 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.878 6.487 -12.285 14.424 hybrid contribution 0.647 -1.078 0.931 1.564 sum -3.232 5.410 -11.354 12.985 Atomic orbital electron populations 1.22935 0.94107 1.03880 1.03370 1.21443 0.94778 0.92162 0.83474 1.21858 1.01501 0.92501 1.03349 1.21616 0.93773 0.93083 0.99018 1.59219 1.58114 1.06222 1.03502 1.19349 0.92751 0.93572 0.85738 1.21457 1.12964 1.16829 1.04577 0.91346 1.25968 0.97513 1.00244 0.96158 1.70101 1.32879 1.43026 1.11690 0.85345 0.78424 0.78156 0.78462 1.19797 1.18564 1.20992 1.21622 0.97168 0.95408 0.91260 1.22491 1.00292 1.01668 0.95935 1.22982 0.94241 0.89394 0.94382 1.87439 1.46925 1.54059 1.43845 0.91435 0.90538 0.89899 0.92664 0.90417 0.90277 0.91622 0.98809 0.97921 1.02856 0.92721 0.96708 0.91500 0.88553 0.89357 0.90901 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.19 7.38 71.98 0.53 -4.66 16 2 C 0.12 3.78 1.10 -10.36 -0.01 3.77 16 3 C -0.13 -3.36 8.55 71.98 0.62 -2.75 16 4 C 0.06 2.21 4.16 87.91 0.37 2.57 16 5 N -0.55 -24.37 2.89 -916.46 -2.65 -27.02 16 6 C 0.21 11.67 4.73 85.56 0.40 12.07 16 7 C -0.52 -29.55 8.12 25.60 0.21 -29.34 16 8 H 0.07 3.75 7.12 -2.91 -0.02 3.73 16 9 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 10 N -0.94 -57.15 13.29 21.45 0.28 -56.86 16 11 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 14 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.07 2.92 5.07 85.48 0.43 3.36 16 16 C -0.17 -5.00 5.32 30.12 0.16 -4.84 16 17 C 0.07 1.71 5.96 72.19 0.43 2.14 16 18 O -0.40 -12.84 9.74 -145.57 -1.42 -14.26 16 19 H 0.07 1.66 7.74 -2.39 -0.02 1.64 16 20 H 0.08 1.82 5.73 -2.39 -0.01 1.80 16 21 H 0.08 2.76 4.49 -2.39 -0.01 2.75 16 22 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 25 H 0.07 2.61 7.70 -2.38 -0.02 2.60 16 26 H -0.01 -0.27 8.09 -2.39 -0.02 -0.29 16 27 H 0.00 0.16 7.85 -2.39 -0.02 0.14 16 28 H -0.05 -2.82 8.14 -2.39 -0.02 -2.84 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 30 H 0.01 0.61 7.64 -2.39 -0.02 0.60 16 31 H 0.07 2.97 6.29 -2.39 -0.02 2.96 16 32 H 0.10 2.96 4.41 -2.39 -0.01 2.95 16 33 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.07 1.54 6.91 -2.39 -0.02 1.52 16 35 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -64.87 263.73 2.90 -61.97 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 1.05 Total: 7.20 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 3.60 Total: -17.27 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -2.36 Total: -83.88 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.42 Total: -14.26 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.87 2.90 -61.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307692420.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.106 kcal (2) G-P(sol) polarization free energy of solvation -64.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds