Wall clock time and date at job start Sun Mar 29 2020 21:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47544 * 2 1 4 4 O 1.42898 * 109.48527 * 120.02672 * 2 1 3 5 5 C 1.42899 * 114.10053 * 181.15859 * 4 2 1 6 6 C 1.53098 * 109.40993 * 298.83671 * 5 4 2 7 7 C 1.53177 * 109.21356 * 57.57693 * 6 5 4 8 8 C 1.53097 * 109.48843 * 239.97585 * 2 1 3 9 9 H 1.09003 * 109.52113 * 62.49256 * 8 2 1 10 10 C 1.50694 * 109.52044 * 302.36990 * 8 2 1 11 11 O 1.21299 * 120.00133 * 359.97438 * 10 8 2 12 12 N 1.34774 * 119.99874 * 180.02562 * 10 8 2 13 13 C 1.37103 * 120.00241 * 179.97438 * 12 10 8 14 14 H 1.08005 * 119.99605 * 0.02562 * 13 12 10 15 15 C 1.38948 * 120.00088 * 179.97438 * 13 12 10 16 16 N 1.31410 * 119.99888 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00237 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47200 * 89.99437 * 17 15 13 19 19 H 1.48498 * 109.47396 * 209.99625 * 17 15 13 20 20 H 1.48502 * 109.46961 * 329.99452 * 17 15 13 21 21 H 1.09005 * 109.46661 * 299.97104 * 1 2 3 22 22 H 1.08998 * 109.47224 * 59.97529 * 1 2 3 23 23 H 1.09003 * 109.46755 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.48409 * 178.86351 * 5 4 2 25 25 H 1.08999 * 109.48281 * 58.81825 * 5 4 2 26 26 H 1.09002 * 109.52244 * 177.51632 * 6 5 4 27 27 H 1.09004 * 109.52508 * 297.64161 * 6 5 4 28 28 H 1.09005 * 109.54330 * 62.92184 * 7 6 5 29 29 H 1.09005 * 109.54560 * 183.18386 * 7 6 5 30 30 H 0.97003 * 120.00286 * 359.97438 * 12 10 8 31 31 H 0.97000 * 120.00193 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0067 -0.6741 1.1663 5 6 3.4308 -0.7089 1.2792 6 6 4.0180 -1.4595 0.0810 7 6 3.5714 -0.7718 -1.2128 8 6 2.0408 -0.7222 -1.2496 9 1 1.7150 -0.1842 -2.1399 10 6 1.4919 -2.1253 -1.2800 11 8 0.7639 -2.5112 -0.3898 12 7 1.8108 -2.9517 -2.2957 13 6 1.3119 -4.2284 -2.3232 14 1 0.6630 -4.5718 -1.5310 15 6 1.6402 -5.0803 -3.3707 16 7 1.1624 -6.3042 -3.3967 17 14 2.7619 -4.4863 -4.7412 18 1 4.1739 -4.7803 -4.3877 19 1 2.4122 -5.1841 -6.0045 20 1 2.5912 -3.0221 -4.9209 21 1 -0.3633 0.5134 0.8903 22 1 -0.3633 0.5142 -0.8897 23 1 -0.3633 -1.0277 -0.0005 24 1 3.7102 -1.2199 2.2005 25 1 3.8191 0.3095 1.2959 26 1 5.1062 -1.4490 0.1422 27 1 3.6627 -2.4901 0.0871 28 1 3.9691 0.2426 -1.2426 29 1 3.9396 -1.3345 -2.0708 30 1 2.3933 -2.6433 -3.0074 31 1 1.3919 -6.8990 -4.1277 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307707696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:41 Heat of formation + Delta-G solvation = -87.340999 kcal Electronic energy + Delta-G solvation = -15095.190188 eV Core-core repulsion = 12569.538116 eV Total energy + Delta-G solvation = -2525.652072 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.88448 -37.32099 -34.05188 -33.33305 -32.13546 -31.49968 -27.68819 -25.14400 -23.88738 -21.87905 -20.96358 -18.98748 -17.90657 -16.18503 -15.79779 -15.21007 -14.87145 -14.54621 -14.36664 -13.44049 -12.98384 -12.94603 -12.42980 -12.26632 -11.93214 -11.86119 -11.48223 -11.35422 -11.13590 -10.68870 -10.57399 -10.37068 -10.03360 -9.94089 -9.46347 -9.07446 -8.21251 -8.09651 -6.27637 -3.78094 3.03644 3.07529 3.15838 3.80155 4.12404 4.15552 4.65412 4.99936 5.04701 5.16071 5.22856 5.31848 5.51448 5.61617 5.70101 5.79946 5.88228 6.00849 6.07574 6.11189 6.15304 6.37002 6.40543 6.55601 7.02315 7.61594 7.71113 8.20879 8.64777 9.00457 9.47821 9.91154 10.85823 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.040927 B = 0.010206 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.977035 B = 2742.839584 C = 2968.978298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 H 0.049 0.951 4 O -0.359 6.359 5 C 0.063 3.937 6 C -0.159 4.159 7 C -0.112 4.112 8 C -0.140 4.140 9 H 0.089 0.911 10 C 0.464 3.536 11 O -0.553 6.553 12 N -0.593 5.593 13 C -0.302 4.302 14 H 0.119 0.881 15 C 0.040 3.960 16 N -0.884 5.884 17 Si 0.876 3.124 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.041 0.959 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.368 0.632 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.221 12.983 2.191 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.059 3.941 3 H 0.067 0.933 4 O -0.277 6.277 5 C -0.014 4.014 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.163 4.163 9 H 0.107 0.893 10 C 0.250 3.750 11 O -0.435 6.435 12 N -0.232 5.232 13 C -0.431 4.431 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.524 5.524 17 Si 0.703 3.297 18 H -0.197 1.197 19 H -0.202 1.202 20 H -0.196 1.196 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.125 0.875 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.201 0.799 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.574 12.411 2.822 13.894 hybrid contribution 1.229 0.414 -1.582 2.046 sum 6.803 12.825 1.240 14.571 Atomic orbital electron populations 1.22105 0.92956 1.06442 1.00451 1.21694 0.95699 0.92549 0.84120 0.93330 1.88058 1.19573 1.77998 1.42117 1.22471 0.82335 0.98388 0.98195 1.22202 1.00362 1.01900 0.95237 1.21572 0.94129 1.00716 0.98571 1.22007 0.96446 0.97364 1.00441 0.89293 1.19463 0.85295 0.86295 0.83926 1.90489 1.39244 1.76126 1.37616 1.42257 1.45634 1.13249 1.22088 1.19445 1.27921 0.85882 1.09813 0.86290 1.25017 0.97956 0.95424 0.97803 1.69620 1.44270 1.05762 1.32744 0.86719 0.81536 0.78783 0.82660 1.19683 1.20208 1.19573 0.93023 0.92434 0.87549 0.89364 0.94098 0.91298 0.90069 0.91655 0.91392 0.79889 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.21 37.16 0.34 -2.41 16 2 C 0.12 1.96 2.84 -26.68 -0.08 1.89 16 3 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 4 O -0.36 -6.66 9.47 -51.89 -0.49 -7.16 16 5 C 0.06 0.93 6.84 37.21 0.25 1.19 16 6 C -0.16 -2.43 5.87 -26.59 -0.16 -2.59 16 7 C -0.11 -1.65 5.46 -26.55 -0.14 -1.79 16 8 C -0.14 -2.43 2.59 -91.63 -0.24 -2.66 16 9 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 10 C 0.46 10.62 5.59 -10.99 -0.06 10.56 16 11 O -0.55 -14.72 12.47 -11.12 -0.14 -14.86 16 12 N -0.59 -14.30 4.97 -10.96 -0.05 -14.36 16 13 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 14 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 15 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 16 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 17 Si 0.88 19.63 27.74 -169.99 -4.71 14.92 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.11 2.23 5.32 -51.93 -0.28 1.96 16 24 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.54 7.40 -51.93 -0.38 1.16 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.99 7.51 -51.93 -0.39 0.60 16 30 H 0.37 7.94 5.17 -40.82 -0.21 7.73 16 31 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 249.63 15.07 3.76 3.76 Total: -1.00 -32.07 249.63 -5.39 -37.46 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.20 Total: 9.06 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -0.33 Total: -3.55 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.72 Total: -39.65 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.63 Total: -22.01 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.07 -5.39 -37.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307707696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.880 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds