Wall clock time and date at job start Sun Mar 29 2020 22:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21689 * 120.00271 * 179.97438 * 3 2 1 5 5 C 1.46370 * 119.99646 * 359.97438 * 3 2 1 6 6 H 1.08003 * 120.00269 * 359.97438 * 5 3 2 7 7 C 1.40052 * 120.00168 * 180.02562 * 5 3 2 8 8 N 1.30670 * 119.99583 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00578 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46745 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47372 * 119.99510 * 9 7 5 12 12 H 1.48497 * 109.47678 * 240.00098 * 9 7 5 13 13 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 14 14 H 1.09003 * 109.52266 * 180.02562 * 13 2 1 15 15 C 1.53180 * 109.51961 * 300.12505 * 13 2 1 16 16 C 1.53182 * 109.03296 * 176.88323 * 15 13 2 17 17 C 1.53088 * 109.16601 * 303.02278 * 16 15 13 18 18 O 1.42902 * 109.41391 * 57.60869 * 17 16 15 19 19 C 1.42907 * 114.15516 * 298.87484 * 18 17 16 20 20 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 21 21 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 22 22 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 23 23 H 0.97008 * 120.00349 * 180.02562 * 8 7 5 24 24 H 1.08991 * 109.54859 * 296.75402 * 15 13 2 25 25 H 1.09000 * 109.54389 * 56.93086 * 15 13 2 26 26 H 1.09004 * 109.52168 * 62.93315 * 16 15 13 27 27 H 1.08999 * 109.52284 * 183.11134 * 16 15 13 28 28 H 1.08996 * 109.48015 * 177.58851 * 17 16 15 29 29 H 1.08995 * 109.48255 * 297.62530 * 17 16 15 30 30 H 1.09005 * 109.42718 * 301.10885 * 19 18 17 31 31 H 1.09001 * 109.54185 * 181.07628 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1672 0.0005 5 6 1.4070 2.4348 -0.0006 6 1 0.3270 2.4348 -0.0014 7 6 2.1072 3.6477 -0.0011 8 7 3.4139 3.6477 -0.0006 9 14 1.1733 5.2654 -0.0026 10 1 -0.2867 4.9940 -0.0036 11 1 1.5315 6.0449 1.2096 12 1 1.5325 6.0434 -1.2154 13 6 2.1975 -1.2687 0.0006 14 1 3.2694 -1.0705 0.0009 15 6 1.8259 -2.0737 1.2497 16 6 2.5372 -3.4295 1.2001 17 6 2.1515 -4.1524 -0.0930 18 8 2.4961 -3.3363 -1.2143 19 6 1.8262 -2.0744 -1.2470 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 -0.8900 -0.5138 22 1 -0.3633 0.8900 -0.5139 23 1 3.8990 4.4878 -0.0006 24 1 2.1394 -1.5299 2.1407 25 1 0.7471 -2.2273 1.2770 26 1 3.6161 -3.2759 1.2238 27 1 2.2352 -4.0308 2.0576 28 1 2.6880 -5.0992 -0.1540 29 1 1.0782 -4.3417 -0.0974 30 1 0.7485 -2.2365 -1.2677 31 1 2.1283 -1.5243 -2.1382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307747991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:15 Heat of formation + Delta-G solvation = -86.840117 kcal Electronic energy + Delta-G solvation = -14771.067400 eV Core-core repulsion = 12245.437048 eV Total energy + Delta-G solvation = -2525.630352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.30597 -37.23409 -34.27369 -32.53244 -32.43618 -29.86054 -26.17593 -25.68781 -24.70905 -22.80289 -20.14085 -18.88776 -16.55291 -15.99462 -15.85995 -15.49166 -14.79268 -14.38778 -14.13999 -13.63066 -13.00820 -12.69292 -12.38268 -12.26843 -11.58949 -11.50655 -11.27905 -11.10335 -10.95384 -10.76075 -10.55266 -10.26043 -10.13845 -9.99517 -9.26275 -8.87335 -7.60195 -7.22717 -6.21255 -4.66993 3.11393 3.19624 3.23752 3.96492 4.14381 4.52868 4.61616 5.08998 5.15200 5.19755 5.37105 5.47503 5.63873 5.78136 5.84790 5.92650 6.00705 6.04851 6.23527 6.25989 6.35292 6.51997 6.66398 6.72247 7.39803 7.43024 7.62298 8.12328 8.33555 9.00225 9.39575 10.55427 10.74078 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061180 B = 0.007806 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.556157 B = 3586.115198 C = 3707.779129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.640 5.640 3 C 0.556 3.444 4 O -0.576 6.576 5 C -0.542 4.542 6 H 0.073 0.927 7 C 0.086 3.914 8 N -0.766 5.766 9 Si 0.907 3.093 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.276 1.276 13 C 0.116 3.884 14 H 0.101 0.899 15 C -0.129 4.129 16 C -0.153 4.153 17 C 0.061 3.939 18 O -0.384 6.384 19 C 0.055 3.945 20 H 0.031 0.969 21 H 0.040 0.960 22 H 0.073 0.927 23 H 0.268 0.732 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.114 -9.788 0.851 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.379 5.379 3 C 0.362 3.638 4 O -0.459 6.459 5 C -0.579 4.579 6 H 0.091 0.909 7 C -0.134 4.134 8 N -0.395 5.395 9 Si 0.732 3.268 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.010 3.990 14 H 0.119 0.881 15 C -0.168 4.168 16 C -0.191 4.191 17 C -0.016 4.016 18 O -0.302 6.302 19 C -0.023 4.023 20 H 0.049 0.951 21 H 0.059 0.941 22 H 0.091 0.909 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.133 -9.729 0.699 11.022 hybrid contribution -0.820 0.878 0.327 1.245 sum -5.953 -8.851 1.027 10.716 Atomic orbital electron populations 1.21394 0.82398 1.01031 0.99635 1.47947 1.05008 1.04810 1.80175 1.18315 0.87012 0.82253 0.76246 1.90594 1.14066 1.86078 1.55142 1.21034 0.93734 0.89132 1.53984 0.90862 1.25756 0.94623 1.00375 0.92604 1.70035 1.07090 1.27227 1.35150 0.86322 0.80485 0.81757 0.78245 1.18744 1.20153 1.20134 1.21197 0.99977 0.85008 0.92772 0.88106 1.21962 0.99857 0.95206 0.99743 1.22194 1.01893 0.97002 0.98027 1.22536 0.99237 0.93734 0.86111 1.87912 1.68443 1.28867 1.44989 1.23013 0.95797 0.83730 0.99752 0.95070 0.94094 0.90857 0.92119 0.91379 0.92293 0.90950 0.91295 0.89338 0.93631 0.93572 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 9.15 59.85 0.55 2.39 16 2 N -0.64 -14.61 2.77 -175.43 -0.49 -15.10 16 3 C 0.56 15.89 7.61 -12.99 -0.10 15.79 16 4 O -0.58 -18.79 14.35 5.20 0.07 -18.72 16 5 C -0.54 -15.20 8.74 -35.63 -0.31 -15.51 16 6 H 0.07 1.87 5.99 -52.48 -0.31 1.56 16 7 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 8 N -0.77 -22.99 11.83 55.55 0.66 -22.33 16 9 Si 0.91 20.01 29.56 -169.99 -5.02 14.99 16 10 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 13 C 0.12 2.34 2.72 -67.79 -0.18 2.16 16 14 H 0.10 2.40 6.90 -51.93 -0.36 2.05 16 15 C -0.13 -2.14 5.36 -26.54 -0.14 -2.28 16 16 C -0.15 -2.08 6.14 -26.59 -0.16 -2.24 16 17 C 0.06 0.80 6.84 37.20 0.25 1.05 16 18 O -0.38 -6.45 10.76 -35.23 -0.38 -6.83 16 19 C 0.05 0.96 6.16 37.20 0.23 1.19 16 20 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.04 0.63 6.38 -51.93 -0.33 0.30 16 22 H 0.07 1.39 6.09 -51.93 -0.32 1.08 16 23 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.89 7.58 -51.93 -0.39 0.50 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.73 6.57 -51.93 -0.34 0.39 16 31 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 253.61 15.07 3.82 3.82 Total: -1.00 -33.55 253.61 -5.45 -39.00 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.15 Total: 0.32 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 0.04 Total: 4.85 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.17 Total: -37.43 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.30 Total: -25.55 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.55 -5.45 -39.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307747991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.844 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds