Wall clock time and date at job start Sun Mar 29 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00212 * 2 1 4 4 O 1.21689 * 120.00271 * 179.97438 * 3 2 1 5 5 C 1.46370 * 119.99646 * 359.97438 * 3 2 1 6 6 H 1.08003 * 120.00269 * 359.97438 * 5 3 2 7 7 C 1.40052 * 120.00168 * 180.02562 * 5 3 2 8 8 N 1.30670 * 119.99583 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00578 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46745 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47372 * 119.99510 * 9 7 5 12 12 H 1.48497 * 109.47678 * 240.00098 * 9 7 5 13 13 C 1.46502 * 120.00062 * 179.97438 * 2 1 3 14 14 H 1.09003 * 109.52266 * 180.02562 * 13 2 1 15 15 C 1.53180 * 109.51961 * 300.12505 * 13 2 1 16 16 C 1.53182 * 109.03296 * 176.88323 * 15 13 2 17 17 C 1.53088 * 109.16601 * 303.02278 * 16 15 13 18 18 O 1.42902 * 109.41391 * 57.60869 * 17 16 15 19 19 C 1.42907 * 114.15516 * 298.87484 * 18 17 16 20 20 H 1.09002 * 109.47391 * 270.00122 * 1 2 3 21 21 H 1.09001 * 109.46813 * 150.00179 * 1 2 3 22 22 H 1.09004 * 109.47041 * 30.00306 * 1 2 3 23 23 H 0.97008 * 120.00349 * 180.02562 * 8 7 5 24 24 H 1.08991 * 109.54859 * 296.75402 * 15 13 2 25 25 H 1.09000 * 109.54389 * 56.93086 * 15 13 2 26 26 H 1.09004 * 109.52168 * 62.93315 * 16 15 13 27 27 H 1.08999 * 109.52284 * 183.11134 * 16 15 13 28 28 H 1.08996 * 109.48015 * 177.58851 * 17 16 15 29 29 H 1.08995 * 109.48255 * 297.62530 * 17 16 15 30 30 H 1.09005 * 109.42718 * 301.10885 * 19 18 17 31 31 H 1.09001 * 109.54185 * 181.07628 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3558 1.1672 0.0005 5 6 1.4070 2.4348 -0.0006 6 1 0.3270 2.4348 -0.0014 7 6 2.1072 3.6477 -0.0011 8 7 3.4139 3.6477 -0.0006 9 14 1.1733 5.2654 -0.0026 10 1 -0.2867 4.9940 -0.0036 11 1 1.5315 6.0449 1.2096 12 1 1.5325 6.0434 -1.2154 13 6 2.1975 -1.2687 0.0006 14 1 3.2694 -1.0705 0.0009 15 6 1.8259 -2.0737 1.2497 16 6 2.5372 -3.4295 1.2001 17 6 2.1515 -4.1524 -0.0930 18 8 2.4961 -3.3363 -1.2143 19 6 1.8262 -2.0744 -1.2470 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 -0.8900 -0.5138 22 1 -0.3633 0.8900 -0.5139 23 1 3.8990 4.4878 -0.0006 24 1 2.1394 -1.5299 2.1407 25 1 0.7471 -2.2273 1.2770 26 1 3.6161 -3.2759 1.2238 27 1 2.2352 -4.0308 2.0576 28 1 2.6880 -5.0992 -0.1540 29 1 1.0782 -4.3417 -0.0974 30 1 0.7485 -2.2365 -1.2677 31 1 2.1283 -1.5243 -2.1382 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307747991.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:14 Heat of formation + Delta-G solvation = -111.597813 kcal Electronic energy + Delta-G solvation = -14772.140974 eV Core-core repulsion = 12245.437048 eV Total energy + Delta-G solvation = -2526.703927 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78448 -39.06193 -36.10200 -34.62744 -33.85517 -31.34374 -28.23034 -27.31135 -26.00198 -24.28389 -21.74771 -20.54231 -18.49301 -17.78468 -17.34827 -16.98711 -16.38169 -15.93956 -15.70790 -15.19634 -14.59347 -14.21618 -14.04233 -13.59171 -13.44467 -13.17091 -13.06656 -12.78474 -12.45529 -12.22712 -12.09037 -12.00296 -11.74570 -11.34443 -10.96415 -10.59609 -9.80489 -9.06463 -8.30101 -6.86181 1.39581 1.39727 1.57902 2.22066 2.43994 2.62933 3.12324 3.56330 3.76959 3.93998 4.00760 4.05653 4.21714 4.48290 4.52207 4.67787 4.69445 4.83245 4.84252 4.93144 4.99349 5.04186 5.25417 5.30057 5.36475 5.75441 6.10025 6.17843 6.43958 6.86204 7.39376 8.45348 8.66230 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061180 B = 0.007806 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.556157 B = 3586.115198 C = 3707.779129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.642 5.642 3 C 0.536 3.464 4 O -0.635 6.635 5 C -0.566 4.566 6 H 0.096 0.904 7 C 0.025 3.975 8 N -0.824 5.824 9 Si 0.999 3.001 10 H -0.243 1.243 11 H -0.270 1.270 12 H -0.269 1.269 13 C 0.111 3.889 14 H 0.048 0.952 15 C -0.121 4.121 16 C -0.148 4.148 17 C 0.055 3.945 18 O -0.402 6.402 19 C 0.068 3.932 20 H 0.045 0.955 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.274 0.726 24 H 0.045 0.955 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.975 -10.693 1.123 14.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.379 5.379 3 C 0.342 3.658 4 O -0.522 6.522 5 C -0.602 4.602 6 H 0.114 0.886 7 C -0.189 4.189 8 N -0.453 5.453 9 Si 0.818 3.182 10 H -0.166 1.166 11 H -0.195 1.195 12 H -0.194 1.194 13 C 0.005 3.995 14 H 0.066 0.934 15 C -0.160 4.160 16 C -0.186 4.186 17 C -0.021 4.021 18 O -0.320 6.320 19 C -0.010 4.010 20 H 0.064 0.936 21 H 0.097 0.903 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.134 0.866 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.048 -10.697 0.975 13.422 hybrid contribution 0.087 1.034 0.263 1.071 sum -7.961 -9.663 1.238 12.581 Atomic orbital electron populations 1.21602 0.79350 1.02636 1.01036 1.47797 1.06955 1.04308 1.78878 1.18769 0.86646 0.84390 0.76004 1.90543 1.16530 1.87458 1.57679 1.21572 0.94980 0.89588 1.54102 0.88574 1.27067 0.95505 1.05168 0.91198 1.70220 1.09697 1.28857 1.36570 0.84961 0.79534 0.75294 0.78447 1.16560 1.19483 1.19447 1.21320 0.96906 0.84850 0.96385 0.93386 1.21888 1.01665 0.95941 0.96494 1.22194 1.00514 0.95718 1.00153 1.22864 1.01336 0.93769 0.84161 1.87900 1.68961 1.28384 1.46757 1.22746 0.97277 0.83817 0.97133 0.93607 0.90251 0.91516 0.91651 0.93653 0.89706 0.92755 0.87738 0.86631 0.91036 0.90566 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.35 9.15 127.77 1.17 4.52 16 2 N -0.64 -29.61 2.77 -827.17 -2.29 -31.90 16 3 C 0.54 31.84 7.61 86.36 0.66 32.50 16 4 O -0.63 -44.07 14.35 -4.31 -0.06 -44.13 16 5 C -0.57 -32.16 8.74 24.83 0.22 -31.94 16 6 H 0.10 4.82 5.99 -2.91 -0.02 4.81 16 7 C 0.03 1.43 5.50 85.31 0.47 1.90 16 8 N -0.82 -51.35 11.83 21.84 0.26 -51.09 16 9 Si 1.00 40.99 29.56 68.60 2.03 43.02 16 10 H -0.24 -9.05 7.11 99.48 0.71 -8.35 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 13 C 0.11 4.53 2.72 45.08 0.12 4.65 16 14 H 0.05 2.46 6.90 -2.39 -0.02 2.45 16 15 C -0.12 -3.87 5.36 30.72 0.16 -3.70 16 16 C -0.15 -3.68 6.14 30.68 0.19 -3.50 16 17 C 0.05 1.24 6.84 72.01 0.49 1.73 16 18 O -0.40 -12.86 10.76 -148.98 -1.60 -14.46 16 19 C 0.07 2.33 6.16 72.01 0.44 2.77 16 20 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.08 2.13 6.38 -2.39 -0.02 2.12 16 22 H 0.07 2.41 6.09 -2.38 -0.01 2.39 16 23 H 0.27 15.40 8.29 -92.70 -0.77 14.64 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.08 2.27 7.58 -2.39 -0.02 2.25 16 26 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 2.14 6.57 -2.38 -0.02 2.12 16 31 H 0.07 2.74 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -78.04 253.61 3.38 -74.67 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 1.12 Total: 14.95 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 3.92 Total: 8.94 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.03 Total: -82.99 kcal Atomic # 8 Polarization: -56.93 SS G_CDS: -1.67 Total: -58.59 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -78.04 3.38 -74.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307747991.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.929 kcal (2) G-P(sol) polarization free energy of solvation -78.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds