Wall clock time and date at job start Sun Mar 29 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46500 * 109.47476 * 239.99811 * 2 1 3 13 13 C 1.34774 * 119.99709 * 84.99803 * 12 2 1 14 14 O 1.21283 * 120.00230 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99634 * 180.02562 * 13 12 2 16 16 O 1.42898 * 112.84823 * 25.33566 * 15 13 12 17 17 C 1.53775 * 113.61587 * 254.13510 * 15 13 12 18 18 C 1.53955 * 87.02193 * 220.05145 * 17 15 13 19 19 C 1.53773 * 87.10915 * 25.36457 * 18 17 15 20 20 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 21 21 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 22 22 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 23 23 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 24 24 H 0.96997 * 119.99804 * 265.00302 * 12 2 1 25 25 H 0.96700 * 114.00425 * 309.66487 * 16 15 13 26 26 H 1.09008 * 113.61697 * 334.57671 * 17 15 13 27 27 H 1.09001 * 113.61417 * 105.47150 * 17 15 13 28 28 H 1.08997 * 113.53594 * 270.80916 * 18 17 15 29 29 H 1.08999 * 113.74011 * 139.94973 * 18 17 15 30 30 H 1.09004 * 113.61234 * 220.09075 * 19 18 17 31 31 H 1.08998 * 113.69271 * 89.20048 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 8 2.4020 -2.1360 -3.5553 17 6 4.0957 -0.3658 -3.9617 18 6 3.6320 -0.3698 -5.4298 19 6 2.2211 -0.0583 -4.9038 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.9031 -0.5278 4.4376 24 1 2.2491 -1.6318 -1.1525 25 1 2.6904 -2.5674 -2.7393 26 1 4.4057 0.6163 -3.6044 27 1 4.8168 -1.1491 -3.7284 28 1 3.7138 -1.3452 -5.9094 29 1 4.0622 0.4333 -6.0281 30 1 1.4308 -0.5940 -5.4299 31 1 2.0161 1.0076 -4.8043 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307749782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:05 Heat of formation + Delta-G solvation = -63.269857 kcal Electronic energy + Delta-G solvation = -14642.879673 eV Core-core repulsion = 12118.271404 eV Total energy + Delta-G solvation = -2524.608269 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.31850 -37.66920 -35.38329 -34.44956 -32.35481 -29.98415 -25.96719 -25.74010 -25.17622 -21.77168 -19.98821 -19.44923 -18.41065 -16.44890 -15.82996 -15.64878 -14.96195 -14.85991 -14.19829 -13.66291 -13.20442 -12.98633 -12.52197 -12.25161 -12.20923 -11.90625 -11.33440 -11.29315 -10.97635 -10.90479 -10.84295 -10.22618 -10.11703 -9.70164 -9.28137 -8.92025 -8.79716 -8.24687 -6.24922 -4.27988 2.99433 3.21045 3.32866 3.37189 3.74993 4.05034 4.28342 4.61024 4.63328 4.79756 5.02533 5.10000 5.51262 5.68416 5.79448 5.85174 5.95050 6.08188 6.27106 6.34291 6.35127 6.52459 6.81082 7.08651 7.21406 7.44750 7.47483 8.08793 8.44921 8.69296 8.80985 9.35546 10.87142 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054633 B = 0.008114 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.390309 B = 3450.071515 C = 3635.375563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.080 0.920 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.697 5.697 13 C 0.492 3.508 14 O -0.548 6.548 15 C 0.084 3.916 16 O -0.535 6.535 17 C -0.151 4.151 18 C -0.133 4.133 19 C -0.110 4.110 20 H 0.048 0.952 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.268 0.732 24 H 0.391 0.609 25 H 0.381 0.619 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 -0.754 -13.343 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.187 1.187 12 N -0.346 5.346 13 C 0.276 3.724 14 O -0.426 6.426 15 C 0.040 3.960 16 O -0.341 6.341 17 C -0.189 4.189 18 C -0.170 4.170 19 C -0.147 4.147 20 H 0.066 0.934 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.078 0.922 24 H 0.225 0.775 25 H 0.229 0.771 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.141 0.195 -13.726 13.774 hybrid contribution -0.289 0.069 1.015 1.057 sum 0.852 0.264 -12.711 12.742 Atomic orbital electron populations 1.22445 0.99185 1.00965 0.99334 1.19135 0.90254 0.94655 0.82721 0.93331 1.21030 1.33443 1.14499 0.88549 0.90186 1.24830 0.95447 0.96725 0.95499 1.69866 1.44810 1.40063 0.98069 0.86868 0.80559 0.83557 0.77467 1.20250 1.22067 1.18697 1.46217 1.64690 1.13638 1.10056 1.20920 0.78547 0.87891 0.85046 1.90647 1.51043 1.15875 1.85073 1.22611 0.97193 0.81802 0.94444 1.86503 1.85294 1.18469 1.43841 1.23519 0.95147 1.03146 0.97071 1.22793 0.96210 1.02102 0.95900 1.22938 0.97828 1.01543 0.92429 0.93390 0.94542 0.92728 0.92223 0.77490 0.77052 0.88710 0.90294 0.89727 0.91020 0.90409 0.87482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.96 37.16 0.33 -3.32 16 2 C 0.24 5.64 2.15 -69.08 -0.15 5.49 16 3 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 4 C -0.54 -14.45 9.31 -34.44 -0.32 -14.77 16 5 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 8 Si 0.89 21.76 24.37 -169.99 -4.14 17.61 16 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.70 -13.82 5.02 -54.93 -0.28 -14.10 16 13 C 0.49 9.42 7.12 -10.98 -0.08 9.34 16 14 O -0.55 -12.32 15.70 5.55 0.09 -12.23 16 15 C 0.08 1.25 1.75 -90.96 -0.16 1.09 16 16 O -0.53 -7.27 13.31 -35.23 -0.47 -7.74 16 17 C -0.15 -1.92 7.47 -25.83 -0.19 -2.11 16 18 C -0.13 -1.48 8.02 -25.83 -0.21 -1.68 16 19 C -0.11 -1.47 7.37 -25.92 -0.19 -1.66 16 20 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 21 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.39 6.64 6.88 -40.82 -0.28 6.36 16 25 H 0.38 4.07 7.45 45.56 0.34 4.40 16 26 H 0.09 1.27 8.09 -51.92 -0.42 0.85 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.11 1.52 7.37 -51.93 -0.38 1.14 16 LS Contribution 255.32 15.07 3.85 3.85 Total: -1.00 -31.54 255.32 -4.64 -36.17 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -3.39 Total: 7.43 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -1.06 Total: -5.52 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.50 Total: -39.57 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.38 Total: -19.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.54 -4.64 -36.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307749782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.095 kcal (2) G-P(sol) polarization free energy of solvation -31.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds