Wall clock time and date at job start Sun Mar 29 2020 21:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46500 * 109.47476 * 239.99811 * 2 1 3 13 13 C 1.34774 * 119.99709 * 84.99803 * 12 2 1 14 14 O 1.21283 * 120.00230 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99634 * 180.02562 * 13 12 2 16 16 O 1.42898 * 112.84823 * 25.33566 * 15 13 12 17 17 C 1.53775 * 113.61587 * 254.13510 * 15 13 12 18 18 C 1.53955 * 87.02193 * 220.05145 * 17 15 13 19 19 C 1.53773 * 87.10915 * 25.36457 * 18 17 15 20 20 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 21 21 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 22 22 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 23 23 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 24 24 H 0.96997 * 119.99804 * 265.00302 * 12 2 1 25 25 H 0.96700 * 114.00425 * 309.66487 * 16 15 13 26 26 H 1.09008 * 113.61697 * 334.57671 * 17 15 13 27 27 H 1.09001 * 113.61417 * 105.47150 * 17 15 13 28 28 H 1.08997 * 113.53594 * 270.80916 * 18 17 15 29 29 H 1.08999 * 113.74011 * 139.94973 * 18 17 15 30 30 H 1.09004 * 113.61234 * 220.09075 * 19 18 17 31 31 H 1.08998 * 113.69271 * 89.20048 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6490 -0.7289 -3.5876 16 8 2.4020 -2.1360 -3.5553 17 6 4.0957 -0.3658 -3.9617 18 6 3.6320 -0.3698 -5.4298 19 6 2.2211 -0.0583 -4.9038 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.9031 -0.5278 4.4376 24 1 2.2491 -1.6318 -1.1525 25 1 2.6904 -2.5674 -2.7393 26 1 4.4057 0.6163 -3.6044 27 1 4.8168 -1.1491 -3.7284 28 1 3.7138 -1.3452 -5.9094 29 1 4.0622 0.4333 -6.0281 30 1 1.4308 -0.5940 -5.4299 31 1 2.0161 1.0076 -4.8043 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307749782.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:04 Heat of formation + Delta-G solvation = -88.610172 kcal Electronic energy + Delta-G solvation = -14643.978512 eV Core-core repulsion = 12118.271404 eV Total energy + Delta-G solvation = -2525.707108 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.63367 -39.07679 -37.01693 -35.72945 -34.33781 -31.80920 -27.36838 -27.04801 -26.76531 -23.39544 -21.56291 -20.62203 -19.95337 -18.35302 -17.48193 -16.88200 -16.62779 -15.95497 -15.73786 -15.28095 -14.99101 -14.49812 -14.18520 -13.80919 -13.66155 -13.36206 -13.08313 -12.82892 -12.44322 -12.18220 -12.10604 -11.80980 -11.63209 -11.34216 -11.17773 -10.90715 -10.37042 -9.98637 -8.41198 -6.47579 1.25250 1.33479 1.42611 1.51873 2.23271 2.26847 2.94746 2.96233 3.48591 3.56230 3.76026 3.84581 4.38084 4.43066 4.53535 4.65326 4.72796 4.77404 4.92606 4.94737 5.03390 5.07891 5.25726 5.36214 5.41351 5.55147 6.06477 6.40445 6.54611 6.81734 7.13439 7.30317 8.73810 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054633 B = 0.008114 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.390309 B = 3450.071515 C = 3635.375563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.240 3.760 3 H 0.023 0.977 4 C -0.536 4.536 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.931 5.931 8 Si 0.937 3.063 9 H -0.260 1.260 10 H -0.290 1.290 11 H -0.264 1.264 12 N -0.697 5.697 13 C 0.488 3.512 14 O -0.584 6.584 15 C 0.085 3.915 16 O -0.534 6.534 17 C -0.149 4.149 18 C -0.115 4.115 19 C -0.115 4.115 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.065 0.935 23 H 0.271 0.729 24 H 0.405 0.595 25 H 0.393 0.607 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -0.950 -14.914 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.136 3.864 3 H 0.041 0.959 4 C -0.574 4.574 5 H 0.078 0.922 6 C -0.169 4.169 7 N -0.570 5.570 8 Si 0.765 3.235 9 H -0.186 1.186 10 H -0.217 1.217 11 H -0.189 1.189 12 N -0.346 5.346 13 C 0.274 3.726 14 O -0.465 6.465 15 C 0.041 3.959 16 O -0.341 6.341 17 C -0.188 4.188 18 C -0.152 4.152 19 C -0.153 4.153 20 H 0.061 0.939 21 H 0.062 0.938 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.241 0.759 25 H 0.243 0.757 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.987 -0.036 -15.313 15.344 hybrid contribution -0.187 0.076 1.485 1.499 sum 0.800 0.040 -13.828 13.851 Atomic orbital electron populations 1.22349 0.97873 1.01749 0.99418 1.18799 0.91207 0.93230 0.83211 0.95903 1.21242 1.32584 1.13746 0.89811 0.92184 1.25535 0.96754 0.99273 0.95355 1.69966 1.46508 1.41816 0.98675 0.86029 0.79840 0.80417 0.77264 1.18559 1.21737 1.18867 1.46066 1.64880 1.14307 1.09372 1.21802 0.77364 0.87636 0.85787 1.90623 1.52466 1.17672 1.85751 1.22674 0.98772 0.82101 0.92400 1.86500 1.85507 1.17478 1.44665 1.23551 0.93897 1.03097 0.98216 1.22756 0.93901 1.03550 0.94974 1.23003 0.99750 1.00767 0.91777 0.93918 0.93782 0.91583 0.91954 0.75895 0.75662 0.89788 0.88600 0.88276 0.89128 0.89727 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.86 8.96 71.98 0.65 -6.21 16 2 C 0.24 11.42 2.15 44.25 0.10 11.51 16 3 H 0.02 1.22 6.63 -2.39 -0.02 1.20 16 4 C -0.54 -28.93 9.31 25.60 0.24 -28.69 16 5 H 0.06 3.41 7.98 -2.91 -0.02 3.38 16 6 C 0.03 1.74 5.45 84.65 0.46 2.20 16 7 N -0.93 -55.27 13.96 21.45 0.30 -54.97 16 8 Si 0.94 44.53 24.37 68.60 1.67 46.20 16 9 H -0.26 -11.63 6.87 99.48 0.68 -10.94 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.26 -12.52 6.53 99.48 0.65 -11.87 16 12 N -0.70 -27.11 5.02 -446.09 -2.24 -29.35 16 13 C 0.49 18.26 7.12 87.66 0.62 18.89 16 14 O -0.58 -26.18 15.70 -3.04 -0.05 -26.23 16 15 C 0.09 2.37 1.75 -11.01 -0.02 2.35 16 16 O -0.53 -13.14 13.31 -148.98 -1.98 -15.12 16 17 C -0.15 -3.44 7.47 31.18 0.23 -3.21 16 18 C -0.11 -2.18 8.02 31.18 0.25 -1.93 16 19 C -0.12 -2.86 7.37 31.12 0.23 -2.63 16 20 H 0.04 1.91 3.27 -2.39 -0.01 1.90 16 21 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 23 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.41 13.34 6.88 -92.71 -0.64 12.70 16 25 H 0.39 7.46 7.45 -74.06 -0.55 6.91 16 26 H 0.08 2.13 8.09 -2.38 -0.02 2.11 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.09 2.59 7.37 -2.39 -0.02 2.57 16 Total: -1.00 -66.71 255.32 0.34 -66.37 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -0.12 Total: 20.81 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 2.76 Total: -7.72 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -1.94 Total: -84.32 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -2.03 Total: -41.34 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.67 Total: 46.20 kcal Total: -66.71 0.34 -66.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307749782.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.242 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds