Wall clock time and date at job start Sun Mar 29 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 N 1.46503 * 109.46842 * 239.99819 * 2 1 3 5 5 C 1.36939 * 120.00003 * 60.00192 * 4 2 1 6 6 H 1.08000 * 119.99456 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46844 * 90.00440 * 9 7 5 11 11 H 1.48497 * 109.47136 * 210.00337 * 9 7 5 12 12 H 1.48495 * 109.46994 * 330.00538 * 9 7 5 13 13 C 1.53003 * 109.47363 * 120.00075 * 2 1 3 14 14 C 1.53174 * 109.61696 * 185.21964 * 13 2 1 15 15 C 1.53095 * 109.16381 * 176.89131 * 14 13 2 16 16 O 1.42910 * 109.41337 * 302.39093 * 15 14 13 17 17 C 1.42902 * 114.09650 * 61.15575 * 16 15 14 18 18 C 1.53093 * 109.41910 * 298.84413 * 17 16 15 19 19 H 1.09001 * 109.46568 * 300.00363 * 1 2 3 20 20 H 1.08995 * 109.47240 * 59.99779 * 1 2 3 21 21 H 1.08992 * 109.47157 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47415 * 180.02562 * 3 2 1 23 23 H 1.09008 * 109.46885 * 300.00079 * 3 2 1 24 24 H 1.09001 * 109.47549 * 60.00238 * 3 2 1 25 25 H 0.97001 * 120.00163 * 239.99117 * 4 2 1 26 26 H 0.96993 * 120.00167 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.54370 * 64.99615 * 13 2 1 28 28 H 1.09004 * 109.52433 * 296.79634 * 14 13 2 29 29 H 1.08999 * 109.52728 * 56.98569 * 14 13 2 30 30 H 1.08998 * 109.48473 * 182.41141 * 15 14 13 31 31 H 1.08997 * 109.48189 * 62.37446 * 15 14 13 32 32 H 1.08997 * 109.48292 * 178.85819 * 17 16 15 33 33 H 1.09005 * 109.48948 * 58.82779 * 17 16 15 34 34 H 1.09003 * 109.51855 * 297.70418 * 18 17 16 35 35 H 1.08993 * 109.52292 * 177.51569 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 1.6874 -0.2228 -2.4399 6 1 1.0669 0.6556 -2.5389 7 6 2.1505 -0.8769 -3.5733 8 7 2.9072 -1.9471 -3.4526 9 14 1.6986 -0.2391 -5.2699 10 1 2.7215 0.7390 -5.7196 11 1 1.6439 -1.3734 -6.2268 12 1 0.3713 0.4241 -5.2120 13 6 2.0400 -0.7213 1.2492 14 6 3.5661 -0.6105 1.3199 15 6 4.0584 -1.2676 2.6121 16 8 3.4328 -0.6391 3.7328 17 6 2.0083 -0.7516 3.7448 18 6 1.4337 -0.0739 2.4981 19 1 -0.3632 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 3.1301 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6768 1.9564 0.8900 25 1 2.5760 -1.4793 -1.1072 26 1 3.2304 -2.4044 -4.2445 27 1 1.7523 -1.7718 1.2068 28 1 4.0083 -1.1174 0.4622 29 1 3.8559 0.4402 1.3123 30 1 5.1398 -1.1541 2.6886 31 1 3.8039 -2.3274 2.6008 32 1 1.6128 -0.2666 4.6371 33 1 1.7267 -1.8047 3.7484 34 1 1.6803 0.9877 2.5143 35 1 0.3508 -0.1970 2.4830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307754208.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:25 Heat of formation + Delta-G solvation = -49.759455 kcal Electronic energy + Delta-G solvation = -15268.174079 eV Core-core repulsion = 12879.984760 eV Total energy + Delta-G solvation = -2388.189320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49725 -36.74891 -33.10858 -31.08049 -30.92097 -28.49799 -26.54485 -25.05622 -23.60000 -22.87428 -20.36395 -18.08450 -17.13305 -15.85518 -15.75860 -15.01931 -14.52185 -14.04716 -13.68457 -13.36311 -13.25442 -12.61928 -12.40381 -12.07787 -11.37858 -11.31089 -11.12585 -11.07992 -10.82406 -10.66608 -10.44947 -10.26252 -10.20399 -9.91879 -9.69254 -9.43938 -9.06666 -8.84314 -6.90531 -5.72480 -2.99714 3.44836 3.50244 3.51511 4.08256 4.61022 5.04282 5.11233 5.21225 5.31880 5.45661 5.58804 5.65384 5.71988 5.78449 5.88448 5.95528 6.00128 6.16126 6.24181 6.29945 6.37307 6.42756 6.51697 6.70299 6.71617 6.74113 6.94550 7.11548 7.28120 7.39874 7.75928 8.46786 9.57779 10.16754 10.51813 11.50633 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049495 B = 0.008277 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.581245 B = 3381.935882 C = 3666.070641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.202 3.798 3 C -0.154 4.154 4 N -0.719 5.719 5 C -0.227 4.227 6 H 0.070 0.930 7 C -0.017 4.017 8 N -0.935 5.935 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.283 1.283 13 C -0.083 4.083 14 C -0.149 4.149 15 C 0.060 3.940 16 O -0.389 6.389 17 C 0.062 3.938 18 C -0.151 4.151 19 H 0.039 0.961 20 H 0.053 0.947 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.037 0.963 25 H 0.383 0.617 26 H 0.253 0.747 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.509 2.562 12.230 12.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.111 3.889 3 C -0.213 4.213 4 N -0.361 5.361 5 C -0.358 4.358 6 H 0.088 0.912 7 C -0.212 4.212 8 N -0.585 5.585 9 Si 0.734 3.266 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.102 4.102 14 C -0.187 4.187 15 C -0.016 4.016 16 O -0.309 6.309 17 C -0.015 4.015 18 C -0.189 4.189 19 H 0.057 0.943 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.056 0.944 25 H 0.217 0.783 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.471 2.730 12.211 12.599 hybrid contribution -0.243 -0.092 -1.362 1.386 sum -1.714 2.637 10.850 11.296 Atomic orbital electron populations 1.22301 0.98087 1.00833 0.99978 1.19518 0.91819 0.91211 0.86385 1.22351 1.01019 0.98112 0.99791 1.42483 1.60759 1.32815 1.00027 1.19158 1.24940 1.08226 0.83471 0.91238 1.24700 1.00844 0.98093 0.97601 1.69653 1.39713 1.20961 1.28133 0.86245 0.77858 0.77577 0.84881 1.21887 1.21905 1.20911 1.21288 0.94726 0.99747 0.94397 1.22272 0.96321 1.02347 0.97719 1.22635 0.97318 0.95683 0.86001 1.87866 1.19381 1.78128 1.45477 1.22564 0.81288 0.99469 0.98201 1.22341 1.00647 1.01129 0.94757 0.94251 0.92789 0.93455 0.92927 0.92951 0.94395 0.78310 0.93686 0.91469 0.90009 0.90837 0.89356 0.93551 0.89533 0.93622 0.90851 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 7.96 37.16 0.30 -2.52 16 2 C 0.20 3.92 0.62 -131.82 -0.08 3.84 16 3 C -0.15 -2.86 7.71 37.16 0.29 -2.58 16 4 N -0.72 -17.58 4.90 -47.23 -0.23 -17.81 16 5 C -0.23 -6.18 8.67 -15.06 -0.13 -6.31 16 6 H 0.07 1.86 6.69 -52.49 -0.35 1.51 16 7 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 8 N -0.94 -28.11 13.06 55.49 0.72 -27.39 16 9 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C -0.08 -1.37 1.67 -90.44 -0.15 -1.52 16 14 C -0.15 -2.42 4.86 -26.59 -0.13 -2.55 16 15 C 0.06 0.85 6.84 37.21 0.25 1.10 16 16 O -0.39 -5.75 10.77 -35.23 -0.38 -6.13 16 17 C 0.06 0.78 6.84 37.21 0.25 1.04 16 18 C -0.15 -2.08 4.64 -26.59 -0.12 -2.20 16 19 H 0.04 0.61 6.43 -51.93 -0.33 0.27 16 20 H 0.05 1.08 7.27 -51.93 -0.38 0.70 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.05 1.00 6.29 -51.93 -0.33 0.67 16 23 H 0.05 1.05 7.27 -51.92 -0.38 0.67 16 24 H 0.04 0.60 6.50 -51.93 -0.34 0.27 16 25 H 0.38 9.98 6.89 -40.82 -0.28 9.70 16 26 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.48 7.30 -51.93 -0.38 1.10 16 29 H 0.07 1.22 6.19 -51.93 -0.32 0.90 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 1.03 6.44 -51.93 -0.33 0.70 16 35 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 LS Contribution 265.89 15.07 4.01 4.01 Total: -1.00 -29.57 265.89 -5.95 -35.52 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.43 Total: 6.58 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 0.38 Total: -12.28 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.49 Total: -45.20 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: -0.38 Total: -6.13 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.57 -5.95 -35.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307754208.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.236 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds