Wall clock time and date at job start Sun Mar 29 2020 22:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47415 * 2 1 4 4 N 1.46503 * 109.46842 * 239.99819 * 2 1 3 5 5 C 1.36939 * 120.00003 * 60.00192 * 4 2 1 6 6 H 1.08000 * 119.99456 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31623 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46844 * 90.00440 * 9 7 5 11 11 H 1.48497 * 109.47136 * 210.00337 * 9 7 5 12 12 H 1.48495 * 109.46994 * 330.00538 * 9 7 5 13 13 C 1.53003 * 109.47363 * 120.00075 * 2 1 3 14 14 C 1.53174 * 109.61696 * 185.21964 * 13 2 1 15 15 C 1.53095 * 109.16381 * 176.89131 * 14 13 2 16 16 O 1.42910 * 109.41337 * 302.39093 * 15 14 13 17 17 C 1.42902 * 114.09650 * 61.15575 * 16 15 14 18 18 C 1.53093 * 109.41910 * 298.84413 * 17 16 15 19 19 H 1.09001 * 109.46568 * 300.00363 * 1 2 3 20 20 H 1.08995 * 109.47240 * 59.99779 * 1 2 3 21 21 H 1.08992 * 109.47157 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47415 * 180.02562 * 3 2 1 23 23 H 1.09008 * 109.46885 * 300.00079 * 3 2 1 24 24 H 1.09001 * 109.47549 * 60.00238 * 3 2 1 25 25 H 0.97001 * 120.00163 * 239.99117 * 4 2 1 26 26 H 0.96993 * 120.00167 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.54370 * 64.99615 * 13 2 1 28 28 H 1.09004 * 109.52433 * 296.79634 * 14 13 2 29 29 H 1.08999 * 109.52728 * 56.98569 * 14 13 2 30 30 H 1.08998 * 109.48473 * 182.41141 * 15 14 13 31 31 H 1.08997 * 109.48189 * 62.37446 * 15 14 13 32 32 H 1.08997 * 109.48292 * 178.85819 * 17 16 15 33 33 H 1.09005 * 109.48948 * 58.82779 * 17 16 15 34 34 H 1.09003 * 109.51855 * 297.70418 * 18 17 16 35 35 H 1.08993 * 109.52292 * 177.51569 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 1.6874 -0.2228 -2.4399 6 1 1.0669 0.6556 -2.5389 7 6 2.1505 -0.8769 -3.5733 8 7 2.9072 -1.9471 -3.4526 9 14 1.6986 -0.2391 -5.2699 10 1 2.7215 0.7390 -5.7196 11 1 1.6439 -1.3734 -6.2268 12 1 0.3713 0.4241 -5.2120 13 6 2.0400 -0.7213 1.2492 14 6 3.5661 -0.6105 1.3199 15 6 4.0584 -1.2676 2.6121 16 8 3.4328 -0.6391 3.7328 17 6 2.0083 -0.7516 3.7448 18 6 1.4337 -0.0739 2.4981 19 1 -0.3632 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 3.1301 1.4425 -0.0005 23 1 1.6767 1.9563 -0.8901 24 1 1.6768 1.9564 0.8900 25 1 2.5760 -1.4793 -1.1072 26 1 3.2304 -2.4044 -4.2445 27 1 1.7523 -1.7718 1.2068 28 1 4.0083 -1.1174 0.4622 29 1 3.8559 0.4402 1.3123 30 1 5.1398 -1.1541 2.6886 31 1 3.8039 -2.3274 2.6008 32 1 1.6128 -0.2666 4.6371 33 1 1.7267 -1.8047 3.7484 34 1 1.6803 0.9877 2.5143 35 1 0.3508 -0.1970 2.4830 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307754208.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:25 Heat of formation + Delta-G solvation = -69.101693 kcal Electronic energy + Delta-G solvation = -15269.012822 eV Core-core repulsion = 12879.984760 eV Total energy + Delta-G solvation = -2389.028062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76281 -38.18946 -34.94257 -32.71152 -32.09747 -30.28264 -28.04856 -26.62258 -25.22677 -24.14060 -21.70209 -19.57728 -19.12295 -17.17942 -16.90971 -16.64107 -15.89406 -15.55876 -15.29741 -14.96825 -14.66838 -14.10746 -13.89891 -13.45860 -13.01522 -12.85358 -12.77470 -12.63811 -12.45570 -12.27407 -12.02772 -11.82837 -11.74062 -11.44177 -11.17320 -11.00904 -10.79553 -10.30516 -8.93924 -7.89306 -5.15062 1.46166 1.46927 1.54859 2.58085 3.03566 3.44014 3.74397 3.83436 3.94420 4.15823 4.22684 4.37764 4.46242 4.48866 4.55556 4.71451 4.83712 4.86087 4.91554 4.94142 5.06488 5.08729 5.15709 5.20563 5.22088 5.36744 5.43901 5.53948 5.66562 5.78127 6.32277 6.34231 7.39789 8.19014 8.41350 9.34646 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.049495 B = 0.008277 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.581245 B = 3381.935882 C = 3666.070641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.190 3.810 3 C -0.146 4.146 4 N -0.730 5.730 5 C -0.216 4.216 6 H 0.072 0.928 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.963 3.037 10 H -0.291 1.291 11 H -0.298 1.298 12 H -0.272 1.272 13 C -0.078 4.078 14 C -0.145 4.145 15 C 0.065 3.935 16 O -0.400 6.400 17 C 0.058 3.942 18 C -0.144 4.144 19 H 0.076 0.924 20 H 0.033 0.967 21 H 0.038 0.962 22 H 0.042 0.958 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.371 0.629 26 H 0.247 0.753 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 3.532 13.866 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.101 3.899 3 C -0.205 4.205 4 N -0.370 5.370 5 C -0.349 4.349 6 H 0.090 0.910 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.793 3.207 10 H -0.219 1.219 11 H -0.225 1.225 12 H -0.197 1.197 13 C -0.097 4.097 14 C -0.183 4.183 15 C -0.011 4.011 16 O -0.319 6.319 17 C -0.018 4.018 18 C -0.182 4.182 19 H 0.094 0.906 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.203 0.797 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.421 3.738 13.883 14.580 hybrid contribution 0.015 -0.359 -1.784 1.819 sum -2.406 3.379 12.100 12.791 Atomic orbital electron populations 1.22216 0.96932 1.00562 1.00822 1.19867 0.92569 0.91588 0.85846 1.22255 1.00387 0.97446 1.00425 1.42713 1.60634 1.32731 1.00938 1.19465 1.23275 1.07446 0.84689 0.90966 1.25434 1.01948 0.98909 1.01023 1.69805 1.41632 1.22512 1.28421 0.85276 0.77904 0.76694 0.80785 1.21852 1.22535 1.19709 1.21222 0.94986 0.99038 0.94464 1.22187 0.96177 1.01888 0.97998 1.22597 0.98129 0.95645 0.84753 1.87863 1.20598 1.78203 1.45205 1.22751 0.80217 1.00226 0.98601 1.22310 1.01394 1.00939 0.93522 0.90556 0.94739 0.94287 0.93885 0.94829 0.91148 0.79712 0.94410 0.92546 0.92793 0.91302 0.88025 0.93013 0.86826 0.92889 0.90624 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 7.96 71.98 0.57 -4.57 16 2 C 0.19 7.22 0.62 3.60 0.00 7.22 16 3 C -0.15 -5.25 7.71 71.98 0.56 -4.69 16 4 N -0.73 -36.07 4.90 -303.34 -1.49 -37.56 16 5 C -0.22 -11.88 8.67 84.03 0.73 -11.15 16 6 H 0.07 3.86 6.69 -2.91 -0.02 3.84 16 7 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 8 N -0.97 -59.80 13.06 21.65 0.28 -59.51 16 9 Si 0.96 46.83 29.55 68.60 2.03 48.86 16 10 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 11 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C -0.08 -2.48 1.67 -10.67 -0.02 -2.50 16 14 C -0.14 -4.61 4.86 30.68 0.15 -4.46 16 15 C 0.07 1.74 6.84 72.01 0.49 2.23 16 16 O -0.40 -10.67 10.77 -148.98 -1.60 -12.27 16 17 C 0.06 1.27 6.84 72.01 0.49 1.77 16 18 C -0.14 -3.48 4.64 30.69 0.14 -3.34 16 19 H 0.08 2.10 6.43 -2.39 -0.02 2.08 16 20 H 0.03 1.32 7.27 -2.39 -0.02 1.30 16 21 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.04 1.60 6.29 -2.39 -0.02 1.59 16 23 H 0.03 1.30 7.27 -2.38 -0.02 1.28 16 24 H 0.07 2.05 6.50 -2.39 -0.02 2.03 16 25 H 0.37 19.88 6.89 -92.71 -0.64 19.24 16 26 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 2.01 7.30 -2.39 -0.02 1.99 16 29 H 0.07 2.23 6.19 -2.39 -0.01 2.22 16 30 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.08 1.82 6.44 -2.39 -0.02 1.81 16 35 H 0.09 1.90 6.55 -2.39 -0.02 1.88 16 Total: -1.00 -63.26 265.89 3.24 -60.02 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.43 Total: 24.20 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 3.58 Total: -23.74 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -1.20 Total: -97.08 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: -1.60 Total: -12.27 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -63.26 3.24 -60.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307754208.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.078 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds